mRNA_P-wetherbeei_contig56505.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56505.1.1
Unique NamemRNA_P-wetherbeei_contig56505.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: A0A7C4Y1Q0_9HYPH (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4Y1Q0_9HYPH)

HSP 1 Score: 106 bits (265), Expect = 8.540e-26
Identity = 57/96 (59.38%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 MSDSRLPTDIPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            M++S+   DI +L+  +  R+R ++ARA TLLET++ GALDL+A + P LG+A V+GFTGPPGAGKSTLVNA+IR  R     VAVIAVDPSSPV+
Sbjct:    1 MTESQSRRDISQLLERVRTRERPAVARAVTLLETLQGGALDLLAMMQPYLGRAQVVGFTGPPGAGKSTLVNAYIRHARGGAKTVAVIAVDPSSPVS 96          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: A0A2S5MZS6_HYPSQ (Methylmalonyl Co-A mutase-associated GTPase MeaB n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MZS6_HYPSQ)

HSP 1 Score: 101 bits (251), Expect = 1.140e-23
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   25 DIPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            D+P  +A + AR+RR++++A T LE + P A  L+ AL P LG ALV GFTGPPGAGKSTLVNA IR LR+    VAVIAVDPSSP++
Sbjct:   28 DLPGFIARITARERRAVSQAVTELERLSPSAPALLQALQPHLGHALVAGFTGPPGAGKSTLVNAVIRELRAAGKTVAVIAVDPSSPIS 115          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: A0A1M6K3U7_9ACTN (LAO/AO transport system kinase n=2 Tax=Nocardiopsis TaxID=2013 RepID=A0A1M6K3U7_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 2.440e-22
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   25 DIPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            D P LV  L   DRR++ARA TL+E   P   +++A LAP  G+A V+GFTGPPG GKST  NA +RA R+R L VAV+AVDPSSP T
Sbjct:    2 DTPRLVEKLLRGDRRALARAITLVENGSPELREIMAGLAPHTGRARVVGFTGPPGVGKSTTTNAAVRAARARGLSVAVLAVDPSSPFT 89          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: UPI00048C0DC8 (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Nocardiopsis sp. CNT312 TaxID=1137268 RepID=UPI00048C0DC8)

HSP 1 Score: 97.1 bits (240), Expect = 3.720e-22
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   37 LVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            LV G+   DRRS+ARA TL+E+  P   D++A L+PR G+A V+GFTG PG GKST+ NA +RA R R L VAV+AVDPSSP T
Sbjct:    6 LVEGVLGGDRRSLARALTLVESGAPALRDIMAGLSPRTGRARVVGFTGAPGVGKSTVTNAVVRAARGRGLSVAVLAVDPSSPFT 89          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: A0A6N6SSM9_9HYPH (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SSM9_9HYPH)

HSP 1 Score: 96.7 bits (239), Expect = 5.130e-22
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   25 DIPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            D+  L+A + A +RR+++R  T LE + PGA  L+ AL P LG ALV+GFTGPPGAGKSTLVNA+ R +RS    V +IAVDPSSP++
Sbjct:   14 DLAALIARVRAGERRAVSRVVTELERLSPGAPRLLEALQPYLGHALVVGFTGPPGAGKSTLVNAYTRHVRSLGQTVGIIAVDPSSPIS 101          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: V5SFN9_9HYPH (Transporter n=2 Tax=Hyphomicrobium TaxID=81 RepID=V5SFN9_9HYPH)

HSP 1 Score: 96.7 bits (239), Expect = 6.710e-22
Identity = 55/87 (63.22%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   28 IPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            IP+LVA L A +RR+IA A T LE +   A  L+ AL P LG ALV+GFTGPPGAGKSTLVNA I  +RS+   V VIAVDPSSPV+
Sbjct:   33 IPDLVARLRAGERRAIAAAVTELEKLSTSAPPLLEALQPHLGNALVVGFTGPPGAGKSTLVNAVIAHVRSQGGTVGVIAVDPSSPVS 119          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: UPI0015E1661E (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Sneathiella aquimaris TaxID=2599305 RepID=UPI0015E1661E)

HSP 1 Score: 94.4 bits (233), Expect = 3.320e-21
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   34 ELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            +LV GL A +R ++ARA TL+E    G  DL+  LAP LG ++V+GFTG PGAGKSTLV A++R LRSR   V VIAVDPSSP++
Sbjct:    7 DLVIGLRAGNRAALARAITLVENNGKGTGDLLQKLAPSLGHSMVVGFTGAPGAGKSTLVGAYVRELRSRGKSVGVIAVDPSSPLS 91          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: A0A259TZS2_9BACT (Uncharacterized protein n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TZS2_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 7.450e-21
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   16 LPTDIPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            +P    +L +G+ +R RR+IARA T +E   PGA DL+ AL P  G+A  IG TGPPGAGKSTL +  + ALR+R   VAV+AVDPSSP T
Sbjct:    1 MPDSALDLASGVRSRQRRTIARALTAVENALPGAADLVDALYPDTGRAWRIGITGPPGAGKSTLTDRLVSALRARGQTVAVVAVDPSSPFT 91          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: A0A0D6JHQ1_9HYPH (Putative enzyme n=2 Tax=Filomicrobium TaxID=119044 RepID=A0A0D6JHQ1_9HYPH)

HSP 1 Score: 93.6 bits (231), Expect = 8.160e-21
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   28 IPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            I + VA L A +RR+IA A T LE +   A  L+ AL P LG+ALVIG TGPPGAGKSTLVNA IR  R+++L V VIAVDPSSP++
Sbjct:   21 ISDQVARLLAGERRAIASAVTELERLSTSAPALLRALQPHLGRALVIGLTGPPGAGKSTLVNALIRHARTQNLRVGVIAVDPSSPIS 107          
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Match: UPI0003774C10 (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI0003774C10)

HSP 1 Score: 92.8 bits (229), Expect = 1.570e-20
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   28 IPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRLGQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT 288
            IP+LV  L A +RR+IA A T LE +   A  L+ AL P LG+ALV+GFTGPPGAGKSTLVNA I  +RS    V VIAVDPSSP++
Sbjct:   21 IPDLVQRLRAGERRAIAAAVTELEKLSASAPPLLEALQPYLGKALVVGFTGPPGAGKSTLVNAVIAHVRSLGGTVGVIAVDPSSPIS 107          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56505.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4Y1Q0_9HYPH8.540e-2659.38Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A2S5MZS6_HYPSQ1.140e-2360.23Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A1M6K3U7_9ACTN2.440e-2257.95LAO/AO transport system kinase n=2 Tax=Nocardiopsi... [more]
UPI00048C0DC83.720e-2259.52methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A6N6SSM9_9HYPH5.130e-2256.82Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
V5SFN9_9HYPH6.710e-2263.22Transporter n=2 Tax=Hyphomicrobium TaxID=81 RepID=... [more]
UPI0015E1661E3.320e-2158.82methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A259TZS2_9BACT7.450e-2154.95Uncharacterized protein n=1 Tax=Rubricoccus marinu... [more]
A0A0D6JHQ1_9HYPH8.160e-2160.92Putative enzyme n=2 Tax=Filomicrobium TaxID=119044... [more]
UPI0003774C101.570e-2060.92methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56505contigP-wetherbeei_contig56505:203..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1137268.AZXF01000010_gene2640
Preferred nameargK
PFAMsArgK
Model size288
Max annot lvl201174|Actinobacteria
KEGG koko:K07588
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.1e-23
EggNOG OGsCOG1703@1|root,COG1703@2|Bacteria,2GME8@201174|Actinobacteria,4EHVD@85012|Streptosporangiales
DescriptionArgK protein
Cds size288
COG categoryE
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.006402-CDS-P-wetherbeei_contig56505:202..4901683186840.006402-CDS-P-wetherbeei_contig56505:202..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56505 203..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56505.1.1prot_P-wetherbeei_contig56505.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56505 203..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56505.1.1

>prot_P-wetherbeei_contig56505.1.1 ID=prot_P-wetherbeei_contig56505.1.1|Name=mRNA_P-wetherbeei_contig56505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MSDSRLPTDIPELVAGLAARDRRSIARACTLLETMKPGALDLIAALAPRL
GQALVIGFTGPPGAGKSTLVNAFIRALRSRDLGVAVIAVDPSSPVT
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mRNA from alignment at P-wetherbeei_contig56505:203..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56505.1.1 ID=mRNA_P-wetherbeei_contig56505.1.1|Name=mRNA_P-wetherbeei_contig56505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig56505:203..490+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGATTCCCGGCTGCCGACCGATATTCCCGAGCTCGTTGCGGGTCT CGCCGCCCGCGACCGGCGTTCGATCGCGCGCGCGTGCACGCTGCTCGAGA CCATGAAACCGGGGGCGCTCGATCTCATCGCGGCGCTCGCCCCGCGGCTG GGGCAGGCGCTCGTGATCGGTTTCACGGGGCCGCCGGGGGCTGGAAAATC GACGCTGGTCAATGCCTTCATCCGGGCGCTGCGGTCGCGTGATCTTGGCG TTGCGGTGATTGCGGTCGATCCCTCGAGCCCGGTCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56505:203..490+

>mRNA_P-wetherbeei_contig56505.1.1 ID=mRNA_P-wetherbeei_contig56505.1.1|Name=mRNA_P-wetherbeei_contig56505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig56505:203..490+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGATTCCCGGCTGCCGACCGATATTCCCGAGCTCGTTGCGGGTCT
CGCCGCCCGCGACCGGCGTTCGATCGCGCGCGCGTGCACGCTGCTCGAGA
CCATGAAACCGGGGGCGCTCGATCTCATCGCGGCGCTCGCCCCGCGGCTG
GGGCAGGCGCTCGTGATCGGTTTCACGGGGCCGCCGGGGGCTGGAAAATC
GACGCTGGTCAATGCCTTCATCCGGGCGCTGCGGTCGCGTGATCTTGGCG
TTGCGGTGATTGCGGTCGATCCCTCGAGCCCGGTCACG
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