mRNA_P-wetherbeei_contig565.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig565.7.1
Unique NamemRNA_P-wetherbeei_contig565.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: D8LAV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAV8_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 6.120e-41
Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 2
Query:   89 SNTYLKRLHPSQVRQRRKERQE-----EDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAPPKLPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            S + LKR +P Q R+ + ER E     E   +  E L L +PP   P F LKNGW PPPE+ P LPF VARTG G  +PVY + KNGRTRT+T+V+K TGD++ F  +L KVC+  KVE R GG+L + G+H   V+RWL+GLGF
Sbjct:    5 SRSALKRFNPKQARETQAERNEARRILESGPVDLESLQLAYPPRTTPEFVLKNGWCPPPESKPDLPFQVARTGKGGFIPVYRDIKNGRTRTVTIVKKATGDMKAFTSDLSKVCQGGKVEAR-GGELRIEGDHATNVKRWLSGLGF 148          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: A0A835YTZ2_9STRA (Mitochondrial large subunit ribosomal protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTZ2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.220e-35
Identity = 68/109 (62.39%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  185 PLKFPPTFVPPFELKNGWTPPPEAPPK-LPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            PLK+ PT  P F L  GW PPPEAPP  +PF V RTG   ALPVYT YKNGRTR +TVVR V GDVEEF +EL KVC NA+V  R+G  + V GNH+  V+ WL GLGF
Sbjct:   50 PLKYIPTAQPAFVLAQGWAPPPEAPPTDIPFQVPRTGVSAALPVYTTYKNGRTRVMTVVRHVKGDVEEFSEELKKVC-NAEVVERRGNSIQVKGNHVKGVQEWLLGLGF 157          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: W7U6S8_9STRA (Ribosomal protein L49/IMG2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6S8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.190e-31
Identity = 68/152 (44.74%), Postives = 92/152 (60.53%), Query Frame = 2
Query:   71 GNERGYSNTYLKRLHPSQVRQRRKERQEEDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAP----PK--LPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            G+ R +SN   KR+  S+ R     R   +      P PLK+PPT+ P   L NGW+ PP+      PK  LPF V RT  G  LPVYT+ + GRT+ +T+VRKV+GD+EE + E+ KVC N +V +R G +L V G +   +R+WLAGLGF
Sbjct:   13 GHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVGLPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: K3X7C0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7C0_GLOUD)

HSP 1 Score: 117 bits (293), Expect = 2.720e-30
Identity = 73/160 (45.62%), Postives = 99/160 (61.88%), Query Frame = 2
Query:   44 ILTRESHTAGN--ERGYSNTYLKRL--HPSQVRQRRKERQEEDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAP-PKLPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            + +R    +GN  ER  SN  ++R   HP+ +R  +++ QEE      E   LKF PT+VP     NGW+P PEAP P LPF V RT  G  LPVY +Y+NGRTR LT++R+  GD EE + E+ KVC   +V VR G +L V G+H+  +++WL GLGF
Sbjct:    1 MFSRRVLVSGNAIERVASNRQIRRKTRHPANLRALQRQPQEE-----IEVPALKFEPTYVPEKVSFNGWSPAPEAPLPNLPFHVKRTALGLQLPVYRDYRNGRTRVLTILRRFKGDEEELRTEMSKVCLGKEVIVRPG-RLEVVGDHVGDLKKWLTGLGF 154          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: M4BYA2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYA2_HYAAE)

HSP 1 Score: 115 bits (289), Expect = 1.090e-29
Identity = 66/147 (44.90%), Postives = 93/147 (63.27%), Query Frame = 2
Query:   77 ERGYSNTYLKRL--HPSQVRQRRKERQEEDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAP-PKLPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            ER  SN  ++R   HP+ +R  +++ ++E +       PLK+ PT+VP     NGW+P PE+P P LPF V RT  G  LPVY +Y+NGRTR LT++R+  GD +E + E+ KVC   +V  R G +L V G+H V +R+WL GLGF
Sbjct:   14 ERVASNRQIRRKTRHPANLRALQRQPKDEVA-----VPPLKYEPTYVPETVSFNGWSPAPESPLPDLPFHVKRTALGLQLPVYRDYRNGRTRVLTILRRYKGDEQELRDEMSKVCEGKQVTARPG-RLEVVGDHAVDIRKWLVGLGF 154          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: A0A484E697_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E697_BRELC)

HSP 1 Score: 115 bits (288), Expect = 1.540e-29
Identity = 72/159 (45.28%), Postives = 97/159 (61.01%), Query Frame = 2
Query:   41 RILTRESHTAGNERGYSNTYLKRL--HPSQVRQRRKERQEEDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAP-PKLPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            R+LT    T   ER  SN  ++R   HP+ +R  +++ QEE    L  P PLK+ PT+VP     NGW+P PEAP   LPF V RT  G  LPVY +Y+NGRTR LT++R+  GD  E + E+ K+C   +V +R G ++ V G+H   VR+WL GLGF
Sbjct:    5 RLLT---STNAIERKASNRQIRRKTRHPANLRALQRQPQEE----LIVP-PLKYEPTYVPEKVSFNGWSPAPEAPLTGLPFHVKRTATGLQLPVYRDYRNGRTRVLTILRRYRGDEHELRDEMSKICEGKEVVIRPG-RMEVVGDHFSDVRKWLVGLGF 154          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: A0A6A3EWI4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EWI4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.180e-29
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = 2
Query:   77 ERGYSNTYLKRL--HPSQVRQRRKERQEEDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAP-PKLPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            ER  SN  ++R   HP+ +R  +++ QEE    +  P PLKF P++VP     NGW+P PEAP P LPF V RT  G  LPVY +++NGRTR LT++R+  GD  E + E+ KVC+  +V VR G +L V G+H   +R+WL GLGF
Sbjct:   14 ERVASNRQIRRKTRHPANLRALQRQPQEE----VVMP-PLKFEPSYVPEKVSFNGWSPAPEAPLPGLPFHVKRTAVGMQLPVYRDFRNGRTRVLTILRRYKGDELELRDEMSKVCQGKEVVVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: D0NCG0_PHYIT (Uncharacterized protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=D0NCG0_PHYIT)

HSP 1 Score: 114 bits (284), Expect = 6.160e-29
Identity = 68/147 (46.26%), Postives = 94/147 (63.95%), Query Frame = 2
Query:   77 ERGYSNTYLKRL--HPSQVRQRRKERQEEDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAPPK-LPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            ER  SN  ++R   HP+ +R  +++ QEE    +  P PLK+ PT+VP     NGW+P PEAP   LPF V RT  G  LPVY +++NGRTR LT++R+  GD +E + E+ KVC+  +V VR G +L V G+H   +R+WL GLGF
Sbjct:   14 ERVASNRQIRRKTRHPANLRALQRQPQEE----VVVP-PLKYEPTYVPEKVSFNGWSPAPEAPLSGLPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: A0A0W8C9Q0_PHYNI (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9Q0_PHYNI)

HSP 1 Score: 116 bits (291), Expect = 1.130e-28
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 2
Query:   77 ERGYSNTYLKRL--HPSQVRQRRKERQEEDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAP-PKLPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            ER  SN  ++R   HP+ +R  +++ QEE    +  P PLK+ PT+VP     NGW+P PEAP P LPF V RT  G  LPVY +++NGRTR LT++R+  GD +E + E+ KVC+  +V VR G +L V G+H   +R+WL GLGF
Sbjct:  134 ERVASNRQIRRKTRHPANLRALQRQPQEE----VVVP-PLKYEPTYVPEKVSFNGWSPAPEAPLPGLPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 274          
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Match: A0A8K1FRY2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRY2_PYTOL)

HSP 1 Score: 112 bits (281), Expect = 1.740e-28
Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   77 ERGYSNTYLKRL--HPSQVRQRRKERQEEDSRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAP-PKLPFGVARTGAGNALPVYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVHGNHMVTVRRWLAGLGF 508
            ER +SN  ++R   HP+ +R +++  + E      E  PLK+ PT+VP     NGW+P PE P P LPF V RT  G  LPVY +Y+NGRTR LT++R+  GD  E Q E+ K+C    V +R G +L V G+H   V++WL GLGF
Sbjct:   14 ERVHSNRQIRRRTRHPAALRAQQRNPKPE-----VEVPPLKYEPTYVPEKVSFNGWSPAPEQPLPNLPFFVKRTAVGLQLPVYRDYRNGRTRVLTILRRFNGDEGELQAEMSKICGGKDVVLRPG-RLEVTGDHASEVKKWLVGLGF 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig565.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV8_ECTSI6.120e-4151.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTZ2_9STRA2.220e-3562.39Mitochondrial large subunit ribosomal protein-doma... [more]
W7U6S8_9STRA3.190e-3144.74Ribosomal protein L49/IMG2 n=2 Tax=Monodopsidaceae... [more]
K3X7C0_GLOUD2.720e-3045.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
M4BYA2_HYAAE1.090e-2944.90Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A484E697_BRELC1.540e-2945.28Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6A3EWI4_9STRA2.180e-2946.94Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
D0NCG0_PHYIT6.160e-2946.26Uncharacterized protein n=8 Tax=Peronosporaceae Ta... [more]
A0A0W8C9Q0_PHYNI1.130e-2846.94Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A8K1FRY2_PYTOL1.740e-2844.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig565contigP-wetherbeei_contig565:4829..5587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LAV8
PFAMsImg2
Model size552
Max annot lvl2759|Eukaryota
KEGG koko:K17430
Hectar predicted targeting categorymitochondrion
Exons2
Evalue4.01e-42
EggNOG OGs2CXPQ@1|root,2RYXJ@2759|Eukaryota
Ec32 ortholog descriptionTranslation initiation factor SUI1
Ec32 orthologEc-27_006240.1
DescriptionMitochondrial large subunit ribosomal protein (Img2)
Cds size501
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.8207984-UTR-P-wetherbeei_contig565:4828..48381683186839.8207984-UTR-P-wetherbeei_contig565:4828..4838Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig565 4829..4838 +
1683186839.8455582-UTR-P-wetherbeei_contig565:5546..55871683186839.8455582-UTR-P-wetherbeei_contig565:5546..5587Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig565 5547..5587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.829945-CDS-P-wetherbeei_contig565:4838..52101683186839.829945-CDS-P-wetherbeei_contig565:4838..5210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig565 4839..5210 +
1683186839.8378427-CDS-P-wetherbeei_contig565:5417..55461683186839.8378427-CDS-P-wetherbeei_contig565:5417..5546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig565 5418..5546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig565.7.1prot_P-wetherbeei_contig565.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig565 4839..5546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig565.7.1

>prot_P-wetherbeei_contig565.7.1 ID=prot_P-wetherbeei_contig565.7.1|Name=mRNA_P-wetherbeei_contig565.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MSAPRAAALLRILTRESHTAGNERGYSNTYLKRLHPSQVRQRRKERQEED
SRLLYEPLPLKFPPTFVPPFELKNGWTPPPEAPPKLPFGVARTGAGNALP
VYTEYKNGRTRTLTVVRKVTGDVEEFQQELGKVCRNAKVEVRQGGKLWVH
GNHMVTVRRWLAGLGF*
back to top

mRNA from alignment at P-wetherbeei_contig565:4829..5587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig565.7.1 ID=mRNA_P-wetherbeei_contig565.7.1|Name=mRNA_P-wetherbeei_contig565.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig565:4829..5587+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTACTAGGATGAGCGCTCCGCGAGCTGCAGCATTGCTGCGGATTCTCA CGCGCGAGTCGCACACCGCGGGAAACGAGAGAGGCTACTCGAACACGTAC CTGAAGCGCCTCCATCCCTCCCAAGTTCGACAAAGGCGAAAGGAGCGGCA GGAGGAGGACAGCCGATTACTCTACGAACCGCTGCCGCTCAAGTTCCCGC CAACGTTCGTGCCGCCCTTCGAGCTGAAGAACGGATGGACGCCGCCGCCA GAGGCGCCACCGAAGCTCCCTTTTGGCGTCGCTCGAACGGGCGCCGGCAA CGCGTTACCGGTATACACAGAGTATAAGAACGGGCGAACACGAACGCTGA CTGTGGTGCGCAAAGTCACTGGCGATGTTGAGGTGAGGCGGAAGGAAAGA GCTGAATTTAACGGGAGAAATATTGGAAGGTGTCGTTAACGCTGCCGCGT TATTGTCGAGGAACAATGAGAAACCAAGCATGCCTGCTGTAGTTTCGTTC GCCGCCAACTCCTTTCATGTCATGAACCATTCTTGTTCCTGGCATCAAAC TCGTCTTCTGTCGGCCCCCTGCCATTTTCCCTTTTGCAGGAGTTTCAGCA AGAACTCGGCAAGGTGTGCCGAAATGCGAAGGTCGAGGTGCGGCAAGGTG GCAAGCTGTGGGTACACGGCAACCACATGGTAACGGTCCGGAGGTGGCTG GCCGGTCTCGGCTTCTAAGAAAGAACATTTCCAACCACATTTCGTCATCT CGTAAGGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig565:4829..5587+

>mRNA_P-wetherbeei_contig565.7.1 ID=mRNA_P-wetherbeei_contig565.7.1|Name=mRNA_P-wetherbeei_contig565.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig565:4829..5587+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGCTCCGCGAGCTGCAGCATTGCTGCGGATTCTCACGCGCGAGTC
GCACACCGCGGGAAACGAGAGAGGCTACTCGAACACGTACCTGAAGCGCC
TCCATCCCTCCCAAGTTCGACAAAGGCGAAAGGAGCGGCAGGAGGAGGAC
AGCCGATTACTCTACGAACCGCTGCCGCTCAAGTTCCCGCCAACGTTCGT
GCCGCCCTTCGAGCTGAAGAACGGATGGACGCCGCCGCCAGAGGCGCCAC
CGAAGCTCCCTTTTGGCGTCGCTCGAACGGGCGCCGGCAACGCGTTACCG
GTATACACAGAGTATAAGAACGGGCGAACACGAACGCTGACTGTGGTGCG
CAAAGTCACTGGCGATGTTGAGGAGTTTCAGCAAGAACTCGGCAAGGTGT
GCCGAAATGCGAAGGTCGAGGTGCGGCAAGGTGGCAAGCTGTGGGTACAC
GGCAACCACATGGTAACGGTCCGGAGGTGGCTGGCCGGTCTCGGCTTCTA
A
back to top