mRNA_P-wetherbeei_contig56489.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56489.1.1
Unique NamemRNA_P-wetherbeei_contig56489.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56489.1.1 vs. uniprot
Match: A0A5E4L9R8_9ARCH (Bacterial Ig-like domain (Group 2) n=1 Tax=uncultured archaeon TaxID=115547 RepID=A0A5E4L9R8_9ARCH)

HSP 1 Score: 56.2 bits (134), Expect = 6.230e-7
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:   22 SDSMPPVLILNGPVDGAAPETADRVAVSGTASDVSGIVAVTVGGMPVALTAAGGFSVAVXXXXXXXXIVVTALDGAGNLQMLTRTITRVVPVIPIRAP 315
            +D+ PP L +N P +G    T   +AVSGTA+D SG+  V+V G  +A+++ G F+  V        I V A D AGN   +TRT T   PV+P   P
Sbjct:  570 TDTTPPTLFVNQPTNGQV-FTTSSIAVSGTATDDSGVQTVSVNGAIIAISS-GPFNTNVFLIPGTNTISVKATDNAGNTAAITRTATYSPPVVPDTTP 665
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56489.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5E4L9R8_9ARCH6.230e-739.80Bacterial Ig-like domain (Group 2) n=1 Tax=uncultu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56489contigP-wetherbeei_contig56489:183..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size315
Hectar predicted targeting categoryother localisation
Exons1
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.511434-UTR-P-wetherbeei_contig56489:182..2121683186839.511434-UTR-P-wetherbeei_contig56489:182..212Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56489 183..212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.522013-CDS-P-wetherbeei_contig56489:212..4971683186839.522013-CDS-P-wetherbeei_contig56489:212..497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56489 213..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56489.1.1prot_P-wetherbeei_contig56489.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56489 213..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56489.1.1

>prot_P-wetherbeei_contig56489.1.1 ID=prot_P-wetherbeei_contig56489.1.1|Name=mRNA_P-wetherbeei_contig56489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MPPVLILNGPVDGAAPETADRVAVSGTASDVSGIVAVTVGGMPVALTAAG
GFSVAVAVGVGTNPIVVTALDGAGNLQMLTRTITRVVPVIPIRAP
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mRNA from alignment at P-wetherbeei_contig56489:183..497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56489.1.1 ID=mRNA_P-wetherbeei_contig56489.1.1|Name=mRNA_P-wetherbeei_contig56489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig56489:183..497+ (Phaeothamnion wetherbeei SAG_119_79)
CACGCCAAGGAACTCGCCCCGAGCGATTCGATGCCGCCGGTCCTGATCCT
GAACGGACCGGTGGATGGCGCCGCGCCCGAGACGGCCGATCGTGTGGCCG
TCAGCGGCACGGCGAGCGACGTGTCGGGCATCGTGGCCGTCACGGTGGGT
GGCATGCCCGTGGCGCTGACCGCAGCGGGGGGCTTCTCGGTGGCCGTTGC
CGTCGGGGTCGGCACGAACCCGATCGTCGTCACGGCGCTCGACGGCGCCG
GCAACCTGCAGATGCTCACCCGCACGATCACCCGGGTCGTTCCGGTGATC
CCGATAAGGGCCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56489:183..497+

>mRNA_P-wetherbeei_contig56489.1.1 ID=mRNA_P-wetherbeei_contig56489.1.1|Name=mRNA_P-wetherbeei_contig56489.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig56489:183..497+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGGTCCTGATCCTGAACGGACCGGTGGATGGCGCCGCGCCCGA
GACGGCCGATCGTGTGGCCGTCAGCGGCACGGCGAGCGACGTGTCGGGCA
TCGTGGCCGTCACGGTGGGTGGCATGCCCGTGGCGCTGACCGCAGCGGGG
GGCTTCTCGGTGGCCGTTGCCGTCGGGGTCGGCACGAACCCGATCGTCGT
CACGGCGCTCGACGGCGCCGGCAACCTGCAGATGCTCACCCGCACGATCA
CCCGGGTCGTTCCGGTGATCCCGATAAGGGCCCCG
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