mRNA_P-wetherbeei_contig56484.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56484.1.1
Unique NamemRNA_P-wetherbeei_contig56484.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: A0A5J6N014_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6N014_9PROT)

HSP 1 Score: 272 bits (696), Expect = 8.540e-90
Identity = 132/162 (81.48%), Postives = 146/162 (90.12%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            FKGS TAL+TP + G+VDE+ FQ  VEWQIAEG  GLVP GTTGESPTLSH+EH RVVELCIEAA  RVPVIAGTGSNSTAEAI+LTQHA++AGA AALVVLPYYNKPTPEGQYQH+KAIHD+  +PI IYNVPPRSAVDM+V+TMARLAKLPRI+GVKDAT
Sbjct:    2 FKGSFTALITPMRKGEVDERAFQELVEWQIAEGTHGLVPVGTTGESPTLSHEEHMRVVELCIEAAAGRVPVIAGTGSNSTAEAIQLTQHAKKAGATAALVVLPYYNKPTPEGQYQHYKAIHDAVEIPIIIYNVPPRSAVDMTVETMARLAKLPRIVGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: UPI0015D49DE5 (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D49DE5)

HSP 1 Score: 271 bits (692), Expect = 3.460e-89
Identity = 134/162 (82.72%), Postives = 143/162 (88.27%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            F GSI AL+TPFK+GKVDE  FQSFVEWQ++EG  GLVP GTTGESPTLSHDEH+RVVELCIEAAG RVPVIAGTGSNSTAEAIELTQHA+QAGA AALVV PYYNKPT EG YQHFKAIHD+  LPI IYN+P RS VDMSV TMARLAKLP I+GVKDAT
Sbjct:    2 FHGSIVALITPFKDGKVDEAAFQSFVEWQVSEGTHGLVPVGTTGESPTLSHDEHRRVVELCIEAAGGRVPVIAGTGSNSTAEAIELTQHAKQAGATAALVVTPYYNKPTQEGLYQHFKAIHDAADLPIIIYNIPGRSVVDMSVATMARLAKLPNIVGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: A0A2U1VEC0_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Azospirillum sp. TSO35-2 TaxID=716796 RepID=A0A2U1VEC0_9PROT)

HSP 1 Score: 270 bits (689), Expect = 9.870e-89
Identity = 132/162 (81.48%), Postives = 141/162 (87.04%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            F GSI AL+TPFK GKVDEK FQSFVEWQ+A+G  GLVPCGTTGESPTLSHDEH RVVELCIEAAG +VPV+AGTGSNST EAI LT+HA QAGA AALVV PYYNKPT EG YQHFKAIHD+  LPIFIYN+P RS VDMSV TMARLAKLP I+GVKDAT
Sbjct:    2 FHGSIVALVTPFKGGKVDEKAFQSFVEWQVAQGTHGLVPCGTTGESPTLSHDEHNRVVELCIEAAGGKVPVMAGTGSNSTEEAIALTRHARQAGAQAALVVTPYYNKPTQEGLYQHFKAIHDAADLPIFIYNIPGRSVVDMSVATMARLAKLPNIVGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: A0A4R6WRR0_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WRR0_9PROT)

HSP 1 Score: 268 bits (686), Expect = 2.910e-88
Identity = 126/162 (77.78%), Postives = 146/162 (90.12%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            FKGS+TAL+TPF+N  VDE GFQ FV+WQI EGI G+VP GTTGESPTL+H+EH RV+EL IE A  RVPVIAGTGSNSTAEAI+LT+HAE+ GADAALVVLPYYN+PTPEGQ+QHFKAIHD+TGLP+ IYNVPPRSAVDMS++TM R A+LPR++GVKDAT
Sbjct:    2 FKGSLTALVTPFRNDAVDEAGFQKFVDWQIKEGIDGIVPVGTTGESPTLTHEEHNRVIELAIEVAKGRVPVIAGTGSNSTAEAIDLTRHAEKVGADAALVVLPYYNRPTPEGQFQHFKAIHDATGLPLIIYNVPPRSAVDMSIETMKRCAELPRVVGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: UPI000400EC5C (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI000400EC5C)

HSP 1 Score: 268 bits (684), Expect = 5.670e-88
Identity = 132/162 (81.48%), Postives = 140/162 (86.42%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            F GSI ALLTPFKNGKVDE  FQSFV+WQ+ EG  GLVPCGTTGESPTLSHDEH+RVVELCIEAAG RVPVIAGTGSNST EAI LT+HA  AGA AALVV PYYNKPT EG YQHFKAIHD+ GLPI IYN+P RS VDMSV TMARLA+LP I+GVKDAT
Sbjct:    2 FHGSIVALLTPFKNGKVDEAAFQSFVDWQVREGTHGLVPCGTTGESPTLSHDEHRRVVELCIEAAGGRVPVIAGTGSNSTEEAIALTRHARAAGAAAALVVTPYYNKPTQEGLYQHFKAIHDAAGLPIIIYNIPGRSVVDMSVATMARLAELPNIVGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: G7Z655_AZOL4 (4-hydroxy-tetrahydrodipicolinate synthase n=30 Tax=cellular organisms TaxID=131567 RepID=G7Z655_AZOL4)

HSP 1 Score: 267 bits (682), Expect = 1.140e-87
Identity = 130/162 (80.25%), Postives = 141/162 (87.04%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            F GS+ ALLTPFK GKVDEK FQSFVEWQ+A+G  GLVPCGTTGESPTLSH+EH RVVELCIEAAG +VPV+AGTGSNST EAI LT+HA QAGA AALVV PYYNKP+ EG YQHFKAIHD+  LPIFIYN+P RS VDMSV TMARLAKLP I+GVKDAT
Sbjct:    2 FHGSVVALLTPFKGGKVDEKAFQSFVEWQVAQGTHGLVPCGTTGESPTLSHEEHNRVVELCIEAAGGKVPVMAGTGSNSTDEAIALTRHARQAGAQAALVVTPYYNKPSQEGLYQHFKAIHDAADLPIFIYNIPGRSVVDMSVATMARLAKLPNIVGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: A0A5C7NX56_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NX56_9PROT)

HSP 1 Score: 266 bits (681), Expect = 1.620e-87
Identity = 123/162 (75.93%), Postives = 145/162 (89.51%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            FKGS+TAL+TPF+NG VDE GFQ FV+WQI  GI G+VP GTTGESPTL+HDEHKRVVELCIEA  KRVPVIAGTGSNST EA++LT+HA++AGADAALV++PYYNKPT EGQYQHFKA+HD+T +PI IYNVP R+  +MS++TM RL+KLPRI+GVKDAT
Sbjct:    2 FKGSLTALITPFRNGSVDEAGFQKFVDWQIKSGIDGVVPVGTTGESPTLTHDEHKRVVELCIEAVAKRVPVIAGTGSNSTDEAVDLTRHAQKAGADAALVIVPYYNKPTQEGQYQHFKAVHDATDIPIIIYNVPGRTVANMSIETMTRLSKLPRIVGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: G8ALM8_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=18 Tax=Azospirillum TaxID=191 RepID=G8ALM8_9PROT)

HSP 1 Score: 266 bits (679), Expect = 3.260e-87
Identity = 131/160 (81.88%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   16 GSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            GSI ALLTPFKNGKVDE  FQSFVEWQ+A+G  GLVPCGTTGESPTLSH+EH RVVELCIEAAG +VPV+AGTGSNST EAI LTQHA++AGA AALVV PYYNKPT EG YQHFKAIHD+  LPI IYN+P RS VDMSV TMARLAKLP IIGVKDAT
Sbjct:    4 GSIVALLTPFKNGKVDEAAFQSFVEWQVAQGTHGLVPCGTTGESPTLSHEEHNRVVELCIEAAGGKVPVVAGTGSNSTEEAISLTQHAKKAGAAAALVVTPYYNKPTQEGLYQHFKAIHDAADLPIVIYNIPGRSVVDMSVATMARLAKLPNIIGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: UPI001A957166 (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A957166)

HSP 1 Score: 264 bits (674), Expect = 1.870e-86
Identity = 127/162 (78.40%), Postives = 140/162 (86.42%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            FKGSI ALLTPF+NG VDEK FQSFVEWQIA+G  GLVPCGTTGESPTLSHDEH RVV LC+EA   RVPVIAGTGSNSTAEA+ LT+HA+QAGADAALVV PYYNKPT EG +QH+KAIHD+  +PI IYN+P R  VDMSV TMARLAKLP ++GVKDAT
Sbjct:    2 FKGSIVALLTPFRNGAVDEKAFQSFVEWQIAQGTHGLVPCGTTGESPTLSHDEHMRVVALCVEATAGRVPVIAGTGSNSTAEAVALTRHAKQAGADAALVVTPYYNKPTQEGLFQHYKAIHDAVDIPIIIYNIPGRCVVDMSVATMARLAKLPNVVGVKDAT 163          
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Match: A0A2U1WMH6_9PROT (4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1WMH6_9PROT)

HSP 1 Score: 263 bits (673), Expect = 2.570e-86
Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 1
Query:   10 FKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESPTLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADAALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMARLAKLPRIIGVKDAT 495
            F GSI ALLTPFKNGKVDE  FQSFVEWQ+AEG   LVPCGTTGESPTLSH+EH RVVELCIEA G +VPVIAGTGSNST EAI LTQHA++AGA AALVV PYYNKP+ EG YQHFKAIHD   LPI IYN+P RS VDMSV TMARLAKLP I+GVKDAT
Sbjct:    2 FHGSIVALLTPFKNGKVDEAAFQSFVEWQVAEGTHALVPCGTTGESPTLSHEEHDRVVELCIEATGGKVPVIAGTGSNSTDEAIRLTQHAKKAGAQAALVVTPYYNKPSQEGLYQHFKAIHDQADLPIIIYNIPGRSVVDMSVATMARLAKLPNIVGVKDAT 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56484.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J6N014_9PROT8.540e-9081.484-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=... [more]
UPI0015D49DE53.460e-8982.724-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
A0A2U1VEC0_9PROT9.870e-8981.484-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
A0A4R6WRR0_9PROT2.910e-8877.784-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
UPI000400EC5C5.670e-8881.484-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
G7Z655_AZOL41.140e-8780.254-hydroxy-tetrahydrodipicolinate synthase n=30 Tax... [more]
A0A5C7NX56_9PROT1.620e-8775.934-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
G8ALM8_9PROT3.260e-8781.884-hydroxy-tetrahydrodipicolinate synthase n=18 Tax... [more]
UPI001A9571661.870e-8678.404-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]
A0A2U1WMH6_9PROT2.570e-8680.254-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56484contigP-wetherbeei_contig56484:1..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380391.JIAS01000020_gene1457
Preferred namedapA
PFAMsDHDPS
Model size495
Max annot lvl204441|Rhodospirillales
KEGG rclassRC03062,RC03063
KEGG koko:K01714
KEGG ReactionR10147
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.78e-93
EggNOG OGsCOG0329@1|root,COG0329@2|Bacteria,1MUCM@1224|Proteobacteria,2TR5W@28211|Alphaproteobacteria,2JPJS@204441|Rhodospirillales
EC4.3.3.7
DescriptionCatalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Cds size495
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.4471126-CDS-P-wetherbeei_contig56484:0..4951683186839.4471126-CDS-P-wetherbeei_contig56484:0..495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56484 1..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56484.1.1prot_P-wetherbeei_contig56484.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56484 1..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56484.1.1

>prot_P-wetherbeei_contig56484.1.1 ID=prot_P-wetherbeei_contig56484.1.1|Name=mRNA_P-wetherbeei_contig56484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MAKFKGSITALLTPFKNGKVDEKGFQSFVEWQIAEGISGLVPCGTTGESP
TLSHDEHKRVVELCIEAAGKRVPVIAGTGSNSTAEAIELTQHAEQAGADA
ALVVLPYYNKPTPEGQYQHFKAIHDSTGLPIFIYNVPPRSAVDMSVDTMA
RLAKLPRIIGVKDAT
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mRNA from alignment at P-wetherbeei_contig56484:1..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56484.1.1 ID=mRNA_P-wetherbeei_contig56484.1.1|Name=mRNA_P-wetherbeei_contig56484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig56484:1..495+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGTTCAAAGGTTCCATCACCGCCCTTCTGACCCCGTTCAAGAA CGGCAAGGTCGACGAGAAGGGATTCCAGAGCTTCGTCGAGTGGCAGATCG CCGAGGGCATCAGCGGCCTGGTGCCGTGCGGCACCACCGGCGAGAGCCCG ACCCTCAGCCATGACGAGCACAAGCGCGTGGTGGAGCTCTGCATCGAGGC GGCGGGCAAGCGCGTGCCGGTCATCGCCGGCACCGGCTCCAATTCCACCG CCGAAGCGATCGAGCTGACCCAGCATGCGGAGCAGGCGGGCGCCGACGCG GCGCTGGTCGTGCTGCCCTACTACAACAAGCCGACGCCGGAAGGGCAGTA CCAGCACTTCAAGGCGATCCATGATTCCACGGGCCTGCCGATCTTCATCT ACAACGTCCCGCCGCGCAGCGCGGTCGACATGAGCGTCGACACCATGGCG CGCCTGGCCAAGCTGCCGCGCATCATCGGCGTCAAGGACGCGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56484:1..495+

>mRNA_P-wetherbeei_contig56484.1.1 ID=mRNA_P-wetherbeei_contig56484.1.1|Name=mRNA_P-wetherbeei_contig56484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig56484:1..495+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGTTCAAAGGTTCCATCACCGCCCTTCTGACCCCGTTCAAGAA
CGGCAAGGTCGACGAGAAGGGATTCCAGAGCTTCGTCGAGTGGCAGATCG
CCGAGGGCATCAGCGGCCTGGTGCCGTGCGGCACCACCGGCGAGAGCCCG
ACCCTCAGCCATGACGAGCACAAGCGCGTGGTGGAGCTCTGCATCGAGGC
GGCGGGCAAGCGCGTGCCGGTCATCGCCGGCACCGGCTCCAATTCCACCG
CCGAAGCGATCGAGCTGACCCAGCATGCGGAGCAGGCGGGCGCCGACGCG
GCGCTGGTCGTGCTGCCCTACTACAACAAGCCGACGCCGGAAGGGCAGTA
CCAGCACTTCAAGGCGATCCATGATTCCACGGGCCTGCCGATCTTCATCT
ACAACGTCCCGCCGCGCAGCGCGGTCGACATGAGCGTCGACACCATGGCG
CGCCTGGCCAAGCTGCCGCGCATCATCGGCGTCAAGGACGCGACC
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