mRNA_P-wetherbeei_contig5646.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5646.4.1
Unique NamemRNA_P-wetherbeei_contig5646.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5646.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5646contigP-wetherbeei_contig5646:1754..2554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size801
Hectar predicted targeting categorychloroplast
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_005260.1
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.143581-CDS-P-wetherbeei_contig5646:1753..25541683186839.143581-CDS-P-wetherbeei_contig5646:1753..2554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5646 1754..2554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5646.4.1prot_P-wetherbeei_contig5646.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5646 1754..2554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5646.4.1

>prot_P-wetherbeei_contig5646.4.1 ID=prot_P-wetherbeei_contig5646.4.1|Name=mRNA_P-wetherbeei_contig5646.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
PESRNLKSCGRIFVRIKMKASSVPALGIFLAGACHAFILVPGMPMVAKST
ARASPHSSPYHVCMMAAKPSRKKRAKRKETEERGNVAEDASATGFDMDLV
TEKGKDGVELDPELTQLFTDDWSGMASPKGMKGGEKQPLPDIGKRLRSGG
KADTTVEKSIDPNKPVKGARAKKQQPAKSAAEMYEEGSLIKASFPPSSLP
IRQNATLDINRGRSFPEIRVFIHAFLPLTNYHCHKHTLGAISALPMSFQK
HINLRHSSPCVPPSVR*
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mRNA from alignment at P-wetherbeei_contig5646:1754..2554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5646.4.1 ID=mRNA_P-wetherbeei_contig5646.4.1|Name=mRNA_P-wetherbeei_contig5646.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig5646:1754..2554- (Phaeothamnion wetherbeei SAG_119_79)
CCGGAATCCCGCAATCTGAAGTCTTGCGGACGCATTTTTGTAAGAATCAA
GATGAAGGCGAGTTCGGTGCCGGCGCTGGGAATCTTTCTCGCTGGAGCTT
GCCATGCGTTCATACTGGTTCCTGGCATGCCCATGGTCGCAAAATCGACC
GCTCGGGCGTCCCCTCACTCCTCTCCCTATCATGTGTGCATGATGGCGGC
CAAGCCGAGTCGAAAGAAACGCGCAAAGCGCAAGGAAACAGAAGAGAGAG
GAAACGTCGCCGAGGACGCGTCGGCCACGGGATTTGACATGGATCTTGTA
ACCGAGAAGGGAAAGGACGGCGTCGAATTGGATCCAGAGCTCACGCAGCT
CTTCACCGACGACTGGTCGGGCATGGCATCGCCCAAGGGCATGAAGGGGG
GGGAGAAGCAACCGCTCCCGGACATTGGAAAGCGGCTGCGTTCTGGGGGC
AAGGCGGACACAACAGTGGAAAAGAGTATCGACCCCAACAAGCCCGTCAA
AGGGGCAAGGGCCAAGAAGCAGCAACCGGCAAAGAGCGCTGCAGAAATGT
ACGAGGAGGGCAGCCTCATCAAGGCAAGTTTCCCTCCATCGTCCCTGCCC
ATTCGCCAAAACGCCACTCTCGACATTAACCGAGGCCGTTCTTTTCCTGA
AATTCGCGTTTTCATTCATGCATTCCTACCGCTCACAAATTATCACTGTC
ATAAACACACCCTTGGTGCTATTTCGGCGCTTCCGATGTCCTTTCAAAAA
CATATTAACCTTCGCCATTCATCCCCTTGTGTGCCGCCTTCTGTACGCTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5646:1754..2554-

>mRNA_P-wetherbeei_contig5646.4.1 ID=mRNA_P-wetherbeei_contig5646.4.1|Name=mRNA_P-wetherbeei_contig5646.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig5646:1754..2554- (Phaeothamnion wetherbeei SAG_119_79)
CCGGAATCCCGCAATCTGAAGTCTTGCGGACGCATTTTTGTAAGAATCAA
GATGAAGGCGAGTTCGGTGCCGGCGCTGGGAATCTTTCTCGCTGGAGCTT
GCCATGCGTTCATACTGGTTCCTGGCATGCCCATGGTCGCAAAATCGACC
GCTCGGGCGTCCCCTCACTCCTCTCCCTATCATGTGTGCATGATGGCGGC
CAAGCCGAGTCGAAAGAAACGCGCAAAGCGCAAGGAAACAGAAGAGAGAG
GAAACGTCGCCGAGGACGCGTCGGCCACGGGATTTGACATGGATCTTGTA
ACCGAGAAGGGAAAGGACGGCGTCGAATTGGATCCAGAGCTCACGCAGCT
CTTCACCGACGACTGGTCGGGCATGGCATCGCCCAAGGGCATGAAGGGGG
GGGAGAAGCAACCGCTCCCGGACATTGGAAAGCGGCTGCGTTCTGGGGGC
AAGGCGGACACAACAGTGGAAAAGAGTATCGACCCCAACAAGCCCGTCAA
AGGGGCAAGGGCCAAGAAGCAGCAACCGGCAAAGAGCGCTGCAGAAATGT
ACGAGGAGGGCAGCCTCATCAAGGCAAGTTTCCCTCCATCGTCCCTGCCC
ATTCGCCAAAACGCCACTCTCGACATTAACCGAGGCCGTTCTTTTCCTGA
AATTCGCGTTTTCATTCATGCATTCCTACCGCTCACAAATTATCACTGTC
ATAAACACACCCTTGGTGCTATTTCGGCGCTTCCGATGTCCTTTCAAAAA
CATATTAACCTTCGCCATTCATCCCCTTGTGTGCCGCCTTCTGTACGCTG
A
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