mRNA_P-wetherbeei_contig56443.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56443.1.1
Unique NamemRNA_P-wetherbeei_contig56443.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56443.1.1 vs. uniprot
Match: W3RGC8_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RGC8_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 2.510e-9
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 MLLAQAKLALVRTSRATLSLLKVFERSYEPSKYYMRGPGPKAREAEQRGEGSNTQASAH 177
            MLLA+AK    +T++A   LLK F+  YEPSK+YMRGPGPKA+ A  R      ++ AH
Sbjct:    1 MLLAKAKAIFAQTNQAIAGLLKSFDERYEPSKHYMRGPGPKAKAAAMRKGSVRDRSKAH 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W3RGC8_9BRAD2.510e-950.85Uncharacterized protein n=1 Tax=Afipia sp. P52-10 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56443contigP-wetherbeei_contig56443:57..239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size183
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.0693204-CDS-P-wetherbeei_contig56443:56..2391683186839.0693204-CDS-P-wetherbeei_contig56443:56..239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56443 57..239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56443.1.1prot_P-wetherbeei_contig56443.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56443 57..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56443.1.1

>prot_P-wetherbeei_contig56443.1.1 ID=prot_P-wetherbeei_contig56443.1.1|Name=mRNA_P-wetherbeei_contig56443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MLLAQAKLALVRTSRATLSLLKVFERSYEPSKYYMRGPGPKAREAEQRGE
GSNTQASAHG*
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mRNA from alignment at P-wetherbeei_contig56443:57..239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56443.1.1 ID=mRNA_P-wetherbeei_contig56443.1.1|Name=mRNA_P-wetherbeei_contig56443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig56443:57..239- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCTTGCCCAAGCAAAACTGGCTCTGGTTCGTACAAGCCGCGCAAC
ACTGTCGCTTCTGAAGGTGTTCGAGCGCAGCTACGAGCCATCAAAGTATT
ATATGCGCGGTCCCGGGCCGAAGGCCCGCGAGGCCGAGCAGCGCGGCGAG
GGCTCCAACACCCAGGCCTCGGCCCACGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56443:57..239-

>mRNA_P-wetherbeei_contig56443.1.1 ID=mRNA_P-wetherbeei_contig56443.1.1|Name=mRNA_P-wetherbeei_contig56443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig56443:57..239- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCTTGCCCAAGCAAAACTGGCTCTGGTTCGTACAAGCCGCGCAAC
ACTGTCGCTTCTGAAGGTGTTCGAGCGCAGCTACGAGCCATCAAAGTATT
ATATGCGCGGTCCCGGGCCGAAGGCCCGCGAGGCCGAGCAGCGCGGCGAG
GGCTCCAACACCCAGGCCTCGGCCCACGGCTGA
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