mRNA_P-wetherbeei_contig5644.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5644.1.4
Unique NamemRNA_P-wetherbeei_contig5644.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5644.1.4 vs. uniprot
Match: D8LK41_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK41_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 5.880e-63
Identity = 127/277 (45.85%), Postives = 167/277 (60.29%), Query Frame = 1 
Query:  454 GALLYIVFLAIVAVRLAPFLRGQPSKITLSSTDGIKFVFHLLLLVAAFLELVNYSATAIEGHGTREGYSCHLLALWLQLLAFSTVIVLWSKTLRPQPAGAAARRGAATAGAAAGVDAPGRPPAGSCRERMRTNSAAITVGMLDAAVLALTLVVIITHNANKASSYPYILLSLLHGLVLFALASWLVVYGLRLQKRVMDHPRWEPLDSGSRLRILLRINGVLIVCAICFLLRVAMLLSTLFMSSNKRMEELSGFAFEALARWVPTLLPAIALTHIMRK 1284
            G +LY +F  +V +R  PFL  + S   LSSTD IK  FH+ +  +A LE+V+Y+           GY+CHL+ LWL L++FS VIVLWS TL P                         P    C  + R + AA  V  +DA ++AL  VV++   +  A S PY++L + H + LF LASWLV+YG+RLQ+RVM HPRWEPLD   RL+IL RINGVL+VCA CFL+RVA+L S LF+ S  R E+++   FE LARWV  L+P +AL HIM K
Sbjct:   11 GIVLYTLFFGLVCIRTRPFLTDRRS---LSSTDRIKLAFHVCINTSALLEIVHYAIELAFRGSVLSGYACHLVGLWLSLVSFSLVIVLWSNTLHPPXXXXXXXXXXXXXXXXXXXXXXXEPAGWRCCGKTRISIAAKFVCAIDA-IVALATVVVLWTGSVPAYSRPYLILMVTHSVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLVRVAVLSSALFVRSRHRAEDMNRLLFEVLARWVSGLIPGVALLHIMCK 283
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5644.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK41_ECTSI5.880e-6345.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5644contigP-wetherbeei_contig5644:453..3238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1595
Hectar predicted targeting categorysignal peptide
Exons7
Cds size1122
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5644.1.4prot_P-wetherbeei_contig5644.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5644 503..2815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.949108-UTR-P-wetherbeei_contig5644:452..5021683186838.949108-UTR-P-wetherbeei_contig5644:452..502Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5644 453..502 -
1683186839.0341747-UTR-P-wetherbeei_contig5644:2815..32381683186839.0341747-UTR-P-wetherbeei_contig5644:2815..3238Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5644 2816..3238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.9597049-CDS-P-wetherbeei_contig5644:502..8571683186838.9597049-CDS-P-wetherbeei_contig5644:502..857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5644 503..857 -
1683186838.9695373-CDS-P-wetherbeei_contig5644:1115..12501683186838.9695373-CDS-P-wetherbeei_contig5644:1115..1250Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5644 1116..1250 -
1683186838.9793813-CDS-P-wetherbeei_contig5644:1499..16101683186838.9793813-CDS-P-wetherbeei_contig5644:1499..1610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5644 1500..1610 -
1683186838.9900413-CDS-P-wetherbeei_contig5644:1790..18891683186838.9900413-CDS-P-wetherbeei_contig5644:1790..1889Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5644 1791..1889 -
1683186839.0006294-CDS-P-wetherbeei_contig5644:2110..23481683186839.0006294-CDS-P-wetherbeei_contig5644:2110..2348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5644 2111..2348 -
1683186839.0164263-CDS-P-wetherbeei_contig5644:2468..25211683186839.0164263-CDS-P-wetherbeei_contig5644:2468..2521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5644 2469..2521 -
1683186839.026214-CDS-P-wetherbeei_contig5644:2684..28151683186839.026214-CDS-P-wetherbeei_contig5644:2684..2815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5644 2685..2815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5644.1.4

>prot_P-wetherbeei_contig5644.1.4 ID=prot_P-wetherbeei_contig5644.1.4|Name=mRNA_P-wetherbeei_contig5644.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=374bp
MKEMREVALWGALLYIVFLAIVAVRLAPFLRGQPSKITLSSTDGIKFVFH
LLLLVAAFLELVNYSATAIEGHGTREGYSCHLLALWLQLLAFSTVIVLWS
KTLRPQPAGAAARRGAATAGAAAGVDAPGRPPAGSCRERMRTNSAAITVG
MLDAAVLALTLVVIITHNANKASSYPYILLSLLHGLVLFALASWLVVYGL
RLQKRVMDHPRWEPLDSGSRLRILLRINGVLIVCAICFLLRVAMLLSTLF
MSSNKRMEELSGFAFEALARWVPTLLPAIALTHIMRKAEGAAADSSAVSA
SATAGSGKPGLPGRGGGGRGLLDGQVKGLEEPLLSRSGRGGEAVLAGGIN
GDSPAADSFVYNMVRQTHNEEVV*
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mRNA from alignment at P-wetherbeei_contig5644:453..3238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5644.1.4 ID=mRNA_P-wetherbeei_contig5644.1.4|Name=mRNA_P-wetherbeei_contig5644.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2786bp|location=Sequence derived from alignment at P-wetherbeei_contig5644:453..3238- (Phaeothamnion wetherbeei SAG_119_79)
CGAAGGTGCGCACGTATTCACTGCAAAGCAAATCGAGAGCACTTCCGCTC
AAATCAACCACCTTCCTTCGGCTTCGTAAAGTTCGTTTTGACATTTTCAG
CGTTCTCTTGTGATGCCCTCGCTTTTTTTACTCCTCTTTGATCCCAGAAG
GCGCCTTTTTCTTCGGTATTGCAAGTTGCACTGGCGACCGAGCAATTCCT
GCTCATTTCGTATCGTCTGAGAACCGCTTGTCTGCCCACTCTCAGGCTTT
TGTTCGTCGTTCTCGTGTTGCGACAGTGAAGTCATCACTCTCATCCAAAT
TCTTTTCGTATGCCAAGGCTGCCACTATTCTGGTCCACTTTCTCCGTTTA
AATAAGAGCCCCATTCTTTTTCCTTCAAATTTTCCCCTTGCAATGTCGTG
CAGGGCATCGTCTTCTTGGCACAATGAAAGAGATGAGGGAGGTGGCCCTC
TGGGGCGCCCTCCTTTACATCGTGTTCCTTGCCATCGTTGCAGTACGACT
GGCGCCATTCCTTCGGGGCCAACCGTCGAAAATCACCCTCTCCTCCACAG
ACGGGTGCGTCGAACGGTCATGTTGCCATGGTCTTTGCATTTTGGCCTCC
GCAGAGTGCCGCTGTTTCTAAACCGCTTGTGAAAGTACAACTCTCCTCGG
AACGCCCATCGTTTTCTTTTTTGAACACTCCCTCTCGATATTTGCCAACC
TCTCTCCTATTCAACAGGATAAAGTTTGTGTTCCACCTCTTGCTGCTGGT
TGCAGCTTTCCTCGAGCTAGGTAAAAAATGGAACTTGAACCCCTGAAGGT
TGACGGTTGTCGACTTGTGCTGAGACACCCTTTGTCGATTCCCTCGTCTC
TCTCACAAAGTAAACTGATTCCTTTCCCCAAAACCCGCAGTCAACTATTC
GGCGACGGCGATCGAGGGCCACGGCACCCGGGAGGGCTATTCCTGTCATC
TTCTCGCACTGTGGCTGCAGCTGCTGGCCTTTTCCACTGTCATCGTCCTC
TGGAGCAAGACGCTCCGGCCGCAGCCGGCTGGCGCGGCGGCGCGGCGCGG
GGCGGCGACGGCGGGCGCGGCGGCGGGCGTTGATGCTCCGGGGAGGCCGC
CGGCGGGCTCGTGCCGGGAGCGCATGCGGTGCGTTTCATTGTTTTTTGTG
TGCGCGCGGTCGTGGAGGGTTGAAGAGCTGGGAGGAAGAAGGCAGCTTTT
GAACCTTTGGTCCCCGGTCGCTGCCATCCAGTTCGTGCGGCACTGTGCTC
TGCAGCCCTTCGTTTCTTCCTCTGTTCTCTCATTCTTGACCGTTTTTTGC
CTTGCATATTTTTTTGCCCTCTCTTTTCCACTCATGCACCAATGAGCAGA
ACGAACTCTGCAGCGATCACCGTCGGGATGCTGGATGCGGCCGTCCTGGC
GCTGACGCTCGTTGTGATTATCACCCACAATGCCAACAAGGCGTCAAGGT
CCGTTGATTTGAAGTTATAGCTGCCAGGTTCGAGGAGGTGCAGCCAACAA
CGTTTTCCCTTTCTGTCTCCATTGTTGTGAAGCCTTCTTTCCAAAGGCCG
CTCCTCTTTTTTCAGCCTTCACTTCCATTGTTGCGGTTTCCTTGTCCTGC
TTGTGTCTTCTTTGCTGTTGCCTGGCAGCTACCCCTACATTTTGCTTTCG
CTGCTACACGGACTAGTGCTCTTCGCGCTGGCGTCGTGGCTCGTCGTGTA
CGGCCTCCGCCTCCAGAAGCGAGTCATGGATCACCCCAGGTGTGGCGGAA
ATGGAAGGCAGAAAACGGGAAAACTTTTCTGGCCGCACGTTTGTGTGCAA
CCGGTAGCTTTCGGAATGCCGGCTCTCTATTCCTTTTTTTGCTACCTTCG
GTCGTGTGCCCGCTTGCAGTCTCCTGTATGCGCAGCAAAGCCTGTTGTGC
CACGCTTCAGCGTAACCAAACCAATCACGCTTCTGCCATTTCTATAATCA
CAATCCGTCGTATGCTTGCTTCTCTCTGCCGCACGCAGGTGGGAGCCGCT
GGACAGCGGAAGCCGGCTGCGGATCCTGCTCCGCATCAACGGCGTCCTCA
TCGTGTGCGCCATCTGCTTTTTGCTGCGGGTGGCTATGCTCCTTTCCACC
CTCTTCATGTCCTCCAACAAGAGGTGCGGAGGGCGGTGCCGGCAGATCTG
AAGGGATGCGGGGCAGGCCGGCTGGGGAGGGAATGCGGTTGGTCGAGGCG
CTACTAGTACAAAGCTGTGAATCCGAAAGTATTCTGGCTTCTTACAGGTT
TTGTCAGCTTTGGTTTTGCCACCTTGCGTCTTCTGTTTCCGCCATCTTTC
CAACGCCATTGGCGGCTGTTCGCGTGACCCCGACGCATGCATCCCCCCCT
TCCCTCCGCCATTTGTTACGCCTTCTGACAGGATGGAGGAGCTAAGCGGC
TTCGCCTTCGAGGCGCTGGCGCGGTGGGTGCCAACGCTCCTCCCCGCCAT
CGCCCTCACCCACATCATGCGGAAAGCTGAAGGCGCCGCCGCCGATTCGT
CCGCTGTATCCGCTTCAGCAACAGCGGGCAGTGGGAAGCCAGGGCTGCCA
GGCCGTGGCGGAGGCGGGCGTGGGCTGTTGGATGGACAAGTCAAGGGACT
CGAGGAGCCGCTGCTCTCACGTAGCGGCCGCGGCGGGGAAGCTGTCCTGG
CGGGCGGGATCAACGGGGATTCGCCCGCCGCGGACTCGTTCGTCTACAAT
ATGGTCCGGCAGACACACAACGAAGAGGTGGTGTGAAAGTCGTTTTCTAA
TCGAAATGTTGTCAGCCTTGCTGCTTTTATGCTCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5644:453..3238-

>mRNA_P-wetherbeei_contig5644.1.4 ID=mRNA_P-wetherbeei_contig5644.1.4|Name=mRNA_P-wetherbeei_contig5644.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1122bp|location=Sequence derived from alignment at P-wetherbeei_contig5644:453..3238- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGAGATGAGGGAGGTGGCCCTCTGGGGCGCCCTCCTTTACATCGT
GTTCCTTGCCATCGTTGCAGTACGACTGGCGCCATTCCTTCGGGGCCAAC
CGTCGAAAATCACCCTCTCCTCCACAGACGGGATAAAGTTTGTGTTCCAC
CTCTTGCTGCTGGTTGCAGCTTTCCTCGAGCTAGTCAACTATTCGGCGAC
GGCGATCGAGGGCCACGGCACCCGGGAGGGCTATTCCTGTCATCTTCTCG
CACTGTGGCTGCAGCTGCTGGCCTTTTCCACTGTCATCGTCCTCTGGAGC
AAGACGCTCCGGCCGCAGCCGGCTGGCGCGGCGGCGCGGCGCGGGGCGGC
GACGGCGGGCGCGGCGGCGGGCGTTGATGCTCCGGGGAGGCCGCCGGCGG
GCTCGTGCCGGGAGCGCATGCGAACGAACTCTGCAGCGATCACCGTCGGG
ATGCTGGATGCGGCCGTCCTGGCGCTGACGCTCGTTGTGATTATCACCCA
CAATGCCAACAAGGCGTCAAGCTACCCCTACATTTTGCTTTCGCTGCTAC
ACGGACTAGTGCTCTTCGCGCTGGCGTCGTGGCTCGTCGTGTACGGCCTC
CGCCTCCAGAAGCGAGTCATGGATCACCCCAGGTGGGAGCCGCTGGACAG
CGGAAGCCGGCTGCGGATCCTGCTCCGCATCAACGGCGTCCTCATCGTGT
GCGCCATCTGCTTTTTGCTGCGGGTGGCTATGCTCCTTTCCACCCTCTTC
ATGTCCTCCAACAAGAGGATGGAGGAGCTAAGCGGCTTCGCCTTCGAGGC
GCTGGCGCGGTGGGTGCCAACGCTCCTCCCCGCCATCGCCCTCACCCACA
TCATGCGGAAAGCTGAAGGCGCCGCCGCCGATTCGTCCGCTGTATCCGCT
TCAGCAACAGCGGGCAGTGGGAAGCCAGGGCTGCCAGGCCGTGGCGGAGG
CGGGCGTGGGCTGTTGGATGGACAAGTCAAGGGACTCGAGGAGCCGCTGC
TCTCACGTAGCGGCCGCGGCGGGGAAGCTGTCCTGGCGGGCGGGATCAAC
GGGGATTCGCCCGCCGCGGACTCGTTCGTCTACAATATGGTCCGGCAGAC
ACACAACGAAGAGGTGGTGTGA
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