mRNA_P-wetherbeei_contig56413.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56413.1.1
Unique NamemRNA_P-wetherbeei_contig56413.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: UPI0019ACE16B (Branched-chain amino acid aminotransferase n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019ACE16B)

HSP 1 Score: 194 bits (493), Expect = 2.270e-58
Identity = 92/137 (67.15%), Postives = 106/137 (77.37%), Query Frame = 1
Query:    7 LPEQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRARR 417
            LP  LGFGR+F+ RMFTQRY A RGWH A IG Y P+ LDPA+ V+H GQMIFDGTKAY RPDG++NLFR + NAERFN SA R+ MP V +D H++AI  LV L+H W P +EG ALYIRPVMIA E TLEVRA R
Sbjct:   33 LPNPLGFGRYFTARMFTQRYTAGRGWHDALIGPYQPLALDPASQVFHCGQMIFDGTKAYSRPDGNLNLFRVEKNAERFNRSASRLAMPEVGIDEHIQAISELVKLEHGWAPKQEGAALYIRPVMIAVENTLEVRASR 169          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: A0A1Z9UJN8_9GAMM (Branched-chain-amino-acid aminotransferase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UJN8_9GAMM)

HSP 1 Score: 189 bits (481), Expect = 7.180e-57
Identity = 89/137 (64.96%), Postives = 108/137 (78.83%), Query Frame = 1
Query:    1 VRLPEQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRA 411
            V  P+ LGFG+ F+ RMF+QR+   +GW+ A+IG Y  I+LDPA TV+HNGQMIFDGTKAYRR DG INLFRP+ N ERFN SA+RMGMP V+ + H+ AI  LV L+ +WVP+ EGTALYIRP MI+ EKTLEVRA
Sbjct:   16 VEFPDSLGFGQIFTDRMFSQRFSPIKGWYDAKIGPYQQISLDPATTVFHNGQMIFDGTKAYRRKDGDINLFRPELNVERFNLSAQRMGMPEVNAESHLTAIRELVRLEEQWVPNMEGTALYIRPTMISIEKTLEVRA 152          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: A0A523NPD7_9PROT (Branched-chain-amino-acid transaminase n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NPD7_9PROT)

HSP 1 Score: 184 bits (468), Expect = 8.070e-55
Identity = 88/138 (63.77%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    4 RLPEQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRARR 417
            R+P++LGFG HFS RMF  RY A  GW    IG +  + L PAA   H GQM+FDGTKAYRRPDG +NLFR + N  RFN SA R+GMP VD  LH+ AIETLVGL+HRWVPD +  +LYIRPVMIATE  LEVRA R
Sbjct:   16 RIPDKLGFGLHFSDRMFRMRYTAAYGWQDPTIGPFQDLILSPAAAALHCGQMVFDGTKAYRRPDGDLNLFRVERNVARFNRSAARLGMPTVDERLHIEAIETLVGLEHRWVPDIDSASLYIRPVMIATEAALEVRASR 153          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: A0A7C1IVS8_9CHLR (Branched-chain-amino-acid transaminase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1IVS8_9CHLR)

HSP 1 Score: 177 bits (449), Expect = 4.430e-52
Identity = 82/135 (60.74%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    7 LPEQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRA 411
            LPE+LGFG+ F+ RMFTQ+Y  E+GWH A+I  Y P +LDPA  V+H  Q IF+GTKAYRRPDGH+NLFRP  NA RFN SA RM M  VD + HV A+  LV L+HRW P + G +LYIRP +IAT+ TL V A
Sbjct:   17 LPEKLGFGQIFTDRMFTQKYSEEKGWHDAQIEPYGPFSLDPATVVFHYAQTIFEGTKAYRRPDGHLNLFRPWENAARFNRSAHRMRMQPVDAEFHVEAMAKLVQLEHRWTPTQPGASLYIRPTLIATDPTLGVHA 151          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: A0A1Z8WXS2_9GAMM (Branched-chain-amino-acid aminotransferase n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WXS2_9GAMM)

HSP 1 Score: 170 bits (431), Expect = 2.090e-49
Identity = 81/137 (59.12%), Postives = 102/137 (74.45%), Query Frame = 1
Query:    1 VRLPEQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRA 411
            + LPE+LGFGR F+ RMF+Q+++ + GWH   I       L P+ TV+HNGQM+FDGTKAY+  DG INLFR + N  RFN SA+RMGMP VD DLH  AI+ L+ L+ +WVP+  G+ALYIRPVMIATE TLEVR+
Sbjct:   15 IDLPERLGFGRIFTDRMFSQKFNRKAGWHDQVISDQKNFELPPSCTVFHNGQMVFDGTKAYKARDGKINLFRTKENIRRFNLSAQRMGMPEVDPDLHFEAIKQLIDLEKKWVPNAAGSALYIRPVMIATEPTLEVRS 151          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: A0A3M2AEW3_9CHLR (Branched-chain-amino-acid transaminase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2AEW3_9CHLR)

HSP 1 Score: 167 bits (424), Expect = 2.500e-48
Identity = 80/131 (61.07%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   19 LGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRA 411
             GFG  F+ RMF Q Y  E+GWH A+IG Y PI LDPA  V+H  Q IF+GTKAYRRPDG+INLFRP  N +RFN SARRM MP VD + H+ AI  L+ L+H WVP+  G ALYIRP MIAT+  L V A
Sbjct:   21 FGFGNTFTNRMFKQWYSPEKGWHDAQIGPYEPICLDPATAVFHYAQEIFEGTKAYRRPDGNINLFRPWENMKRFNNSARRMAMPVVDEEDHLGAIVKLIELEHEWVPNAPGAALYIRPTMIATDPALGVHA 151          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: A0A3M1X9C3_9CHLR (Branched-chain-amino-acid transaminase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A3M1X9C3_9CHLR)

HSP 1 Score: 165 bits (418), Expect = 1.970e-47
Identity = 81/135 (60.00%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    7 LPEQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRA 411
            L E+  FG+ F+ RMF+Q +  E+GWH A+IG Y P++LDPA  V H  Q IF+GTKAYRRPDGHINLFRP  N  RFN SA RM MP VD + H+ AI  LV L+H WVP  EG +LYIRPVMIAT+  L V A
Sbjct:   16 LVEKPVFGKTFTNRMFSQWWTEEKGWHDAKIGPYQPLSLDPATAVLHYAQEIFEGTKAYRRPDGHINLFRPWENVARFNRSADRMAMPQVDPEAHLEAIVALVRLEHAWVPSGEGESLYIRPVMIATDVGLGVYA 150          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: A0A7L5YUG4_9CHLR (Branched-chain-amino-acid transaminase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7L5YUG4_9CHLR)

HSP 1 Score: 162 bits (409), Expect = 4.350e-46
Identity = 84/136 (61.76%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    7 LPEQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIF-DGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRA 411
            LPE+  FGR FS RMFTQ Y   +GWH ARIG Y   TLDPAA V H  Q IF +GTKAYRRPDG+INLFRP  NA RFN SA RM M  VD   H  AI  LV L+H WVP  +G ALYIRP MIA++  L V+A
Sbjct:   16 LPEKFVFGRTFSNRMFTQTYTPNQGWHDARIGPYHAFTLDPAAIVLHYAQTIFXEGTKAYRRPDGNINLFRPWENAARFNRSATRMAMAPVDPQEHFTAIAELVRLEHAWVPAADGAALYIRPTMIASDSGLGVQA 151          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: A0A2G6GF96_9CHLR (Branched-chain-amino-acid transaminase n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2G6GF96_9CHLR)

HSP 1 Score: 161 bits (408), Expect = 6.130e-46
Identity = 80/133 (60.15%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   13 EQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRA 411
            +  GFG  FS RMFTQ+Y A  GWH A IGAY P+ L P+  V+H  Q IF+GTKAYRRPDGHINLFRP  NA RFN SA+RM MP V  + HV AI  L+ L++ WVP+  G  LYIRP MIATE  L V A
Sbjct:   19 DDFGFGNLFSNRMFTQQYTAGVGWHDAEIGAYRPLQLPPSTAVFHYAQEIFEGTKAYRRPDGHINLFRPWENARRFNLSAQRMVMPTVAEEDHVAAIIKLIELENEWVPNVAGATLYIRPTMIATEAALGVHA 151          
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Match: UPI001CD1A9AF (branched-chain amino acid aminotransferase n=1 Tax=Desulfuromonas sp. CSMB_57 TaxID=2807629 RepID=UPI001CD1A9AF)

HSP 1 Score: 159 bits (403), Expect = 3.110e-45
Identity = 81/131 (61.83%), Postives = 92/131 (70.23%), Query Frame = 1
Query:   16 QLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHNGQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRAIETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVR 408
            +L FGR FS RMF   YDA +GWH+ARI  Y P TLDPAA V H GQ IF+G KA+RR DG I LFRP  N  RFN+SARRM MP VD    +RAI+ LV L+  WVP  EGT+LYIRP MIATE  L V+
Sbjct:   20 KLVFGRQFSDRMFLMEYDAGQGWHSARIKPYGPFTLDPAALVLHYGQEIFEGLKAFRRQDGSIALFRPADNIHRFNKSARRMCMPEVDEAFFLRAIKDLVRLEADWVPRSEGTSLYIRPTMIATEAVLGVK 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56413.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019ACE16B2.270e-5867.15Branched-chain amino acid aminotransferase n=1 Tax... [more]
A0A1Z9UJN8_9GAMM7.180e-5764.96Branched-chain-amino-acid aminotransferase n=3 Tax... [more]
A0A523NPD7_9PROT8.070e-5563.77Branched-chain-amino-acid transaminase n=2 Tax=Pro... [more]
A0A7C1IVS8_9CHLR4.430e-5260.74Branched-chain-amino-acid transaminase n=1 Tax=Chl... [more]
A0A1Z8WXS2_9GAMM2.090e-4959.12Branched-chain-amino-acid aminotransferase n=1 Tax... [more]
A0A3M2AEW3_9CHLR2.500e-4861.07Branched-chain-amino-acid transaminase n=1 Tax=Chl... [more]
A0A3M1X9C3_9CHLR1.970e-4760.00Branched-chain-amino-acid transaminase n=2 Tax=Chl... [more]
A0A7L5YUG4_9CHLR4.350e-4661.76Branched-chain-amino-acid transaminase n=1 Tax=Ana... [more]
A0A2G6GF96_9CHLR6.130e-4660.15Branched-chain-amino-acid transaminase n=2 Tax=Chl... [more]
UPI001CD1A9AF3.110e-4561.83branched-chain amino acid aminotransferase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56413contigP-wetherbeei_contig56413:101..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog591158.SSMG_01719
Preferred nameilvE
PFAMsAminotran_4
Model size417
Max annot lvl201174|Actinobacteria
KEGG rclassRC00006,RC00036
KEGG koko:K00826
KEGG ReactionR01090,R01214,R02199,R10991
KEGG Pathwayko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00036,M00119,M00570
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004084,GO:0005488,GO:0006082,GO:0006464,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009081,GO:0009082,GO:0009086,GO:0009987,GO:0016053,GO:0016740,GO:0016769,GO:0017144,GO:0018065,GO:0018193,GO:0018205,GO:0018272,GO:0018352,GO:0019538,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0036211,GO:0040007,GO:0043094,GO:0043102,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044283,GO:0046394,GO:0048037,GO:0050662,GO:0070279,GO:0071265,GO:0071267,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons1
Evalue1.33e-44
EggNOG OGsCOG0115@1|root,COG0115@2|Bacteria,2GKJ1@201174|Actinobacteria
EC2.6.1.42
DescriptionBranched-chain amino acid aminotransferase
Cds size417
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.7330377-CDS-P-wetherbeei_contig56413:100..5171683186838.7330377-CDS-P-wetherbeei_contig56413:100..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56413 101..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56413.1.1prot_P-wetherbeei_contig56413.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56413 101..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56413.1.1

>prot_P-wetherbeei_contig56413.1.1 ID=prot_P-wetherbeei_contig56413.1.1|Name=mRNA_P-wetherbeei_contig56413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
VRLPEQLGFGRHFSTRMFTQRYDAERGWHAARIGAYAPITLDPAATVYHN
GQMIFDGTKAYRRPDGHINLFRPQCNAERFNESARRMGMPAVDVDLHVRA
IETLVGLDHRWVPDREGTALYIRPVMIATEKTLEVRARR
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mRNA from alignment at P-wetherbeei_contig56413:101..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56413.1.1 ID=mRNA_P-wetherbeei_contig56413.1.1|Name=mRNA_P-wetherbeei_contig56413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig56413:101..517+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGGCTACCCGAGCAACTCGGCTTCGGGCGTCATTTCTCCACGCGCAT GTTCACTCAGCGCTACGACGCGGAACGCGGCTGGCACGCAGCGCGGATTG GCGCCTATGCGCCCATCACCCTCGACCCGGCGGCGACGGTCTACCACAAT GGCCAGATGATCTTTGACGGTACCAAGGCCTACCGCCGTCCCGATGGCCA TATCAACCTGTTCCGTCCGCAATGTAATGCCGAGCGCTTCAATGAATCGG CGCGGCGCATGGGCATGCCAGCGGTCGATGTGGACCTGCACGTGCGCGCG ATAGAGACCCTGGTCGGACTCGATCATCGCTGGGTACCAGACCGTGAAGG CACCGCGCTCTACATACGGCCGGTCATGATCGCGACCGAGAAGACCCTGG AAGTGCGCGCCAGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56413:101..517+

>mRNA_P-wetherbeei_contig56413.1.1 ID=mRNA_P-wetherbeei_contig56413.1.1|Name=mRNA_P-wetherbeei_contig56413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig56413:101..517+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGGCTACCCGAGCAACTCGGCTTCGGGCGTCATTTCTCCACGCGCAT
GTTCACTCAGCGCTACGACGCGGAACGCGGCTGGCACGCAGCGCGGATTG
GCGCCTATGCGCCCATCACCCTCGACCCGGCGGCGACGGTCTACCACAAT
GGCCAGATGATCTTTGACGGTACCAAGGCCTACCGCCGTCCCGATGGCCA
TATCAACCTGTTCCGTCCGCAATGTAATGCCGAGCGCTTCAATGAATCGG
CGCGGCGCATGGGCATGCCAGCGGTCGATGTGGACCTGCACGTGCGCGCG
ATAGAGACCCTGGTCGGACTCGATCATCGCTGGGTACCAGACCGTGAAGG
CACCGCGCTCTACATACGGCCGGTCATGATCGCGACCGAGAAGACCCTGG
AAGTGCGCGCCAGGCGC
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