mRNA_P-wetherbeei_contig56396.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56396.1.1
Unique NamemRNA_P-wetherbeei_contig56396.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A7W0KE82_9CHLR (DNA starvation/stationary phase protection protein Dps n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KE82_9CHLR)

HSP 1 Score: 127 bits (319), Expect = 1.390e-35
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 1
Query:   10 ASKTKETTRTFPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            AS  K T R F T NDL ++ R Q I LLNQQLADSLDLYSQTKQAHWNVKG +FYQLHL+FDEHAAHV+ WID++AERAVMLG
Sbjct:    2 ASAKKSTVRAFATKNDLAKKVRTQAIDLLNQQLADSLDLYSQTKQAHWNVKGSDFYQLHLMFDEHAAHVVGWIDLVAERAVMLG 85          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A7W0PM85_9CHLR (DNA starvation/stationary phase protection protein Dps n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PM85_9CHLR)

HSP 1 Score: 120 bits (300), Expect = 1.060e-32
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query:   22 KETTRTFPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            K + RTF T NDL +  R++VI LLNQQLADSLDLYSQTKQAHWNVKG +FYQLHL+FDEHA  V+ WID++AERAVMLG
Sbjct:    6 KSSVRTFATKNDLDKGIRKRVIELLNQQLADSLDLYSQTKQAHWNVKGSDFYQLHLMFDEHAGLVVGWIDLLAERAVMLG 85          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A6J4VDI3_9CHLR (DNA protection during starvation protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VDI3_9CHLR)

HSP 1 Score: 116 bits (291), Expect = 2.440e-31
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 MATASKTKETTRTFPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            M+TASK +   R FP  N LP+ T+ ++I  LNQQLAD+LDLY+QTKQAHWNVKG +FYQLHLLFD HA H L W+D++AERA M+G
Sbjct:    1 MSTASKAQ--ARIFPNHNSLPDHTKTRMIETLNQQLADTLDLYAQTKQAHWNVKGKDFYQLHLLFDTHAEHALEWVDLLAERATMIG 85          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A7V1VZM1_9CHLR (DNA starvation/stationary phase protection protein Dps n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7V1VZM1_9CHLR)

HSP 1 Score: 105 bits (262), Expect = 5.380e-27
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   28 TTRTFPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            TTR +PT +DL   TREQ++ALLNQQLAD+ DLYSQTKQAHWNVKG  F QLH LFDE A  V  +IDM+AERA  LG
Sbjct:    3 TTRVYPTRHDLSTTTREQMVALLNQQLADAFDLYSQTKQAHWNVKGPEFSQLHELFDELAEAVRGYIDMLAERATALG 80          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A7C7DTR5_9CHLR (DNA starvation/stationary phase protection protein Dps n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C7DTR5_9CHLR)

HSP 1 Score: 105 bits (261), Expect = 7.410e-27
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   31 TRTFPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            T TF T NDLP+ TRE +I LLNQ LAD+ DLYSQTKQAHWNVKGM+F QLH LFD  A  VL ++D IAERA  LG
Sbjct:    4 TTTFATRNDLPQTTRETIITLLNQHLADTFDLYSQTKQAHWNVKGMHFIQLHELFDALAGSVLGYVDEIAERATALG 80          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A2V8U4R7_9BACT (DNA starvation/stationary phase protection protein Dps n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8U4R7_9BACT)

HSP 1 Score: 103 bits (258), Expect = 2.600e-26
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   40 FPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            FPT  DLP E R  +I LLN++LAD++DLYSQ KQAHWNVKG+NF+QLH LFD+ A  VLP++D IAERA  LG
Sbjct:   12 FPTRIDLPSEDRTALIGLLNERLADTMDLYSQVKQAHWNVKGLNFFQLHELFDQLAGEVLPFVDQIAERATALG 85          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: UPI0019E084FA (DNA starvation/stationary phase protection protein Dps n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI0019E084FA)

HSP 1 Score: 102 bits (254), Expect = 9.180e-26
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   40 FPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            +P+  DLP ETR QV++LLNQ LAD+LDLY+Q KQAHWNVKG+NFYQLH LFD  A  V  ++DM+AER   LG
Sbjct:   10 YPSRIDLPAETRTQVVSLLNQTLADTLDLYTQVKQAHWNVKGLNFYQLHELFDTIAGEVAEYVDMVAERVTALG 83          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A7S7NN02_9BACT (DNA starvation/stationary phase protection protein Dps n=1 Tax=Paludibaculum fermentans TaxID=1473598 RepID=A0A7S7NN02_9BACT)

HSP 1 Score: 100 bits (250), Expect = 3.790e-25
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   40 FPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            FPT  DLPE  RE ++ LLN +LAD+ DLYSQ KQAHWNVKG NF+QLH LFD+ A  + P+ID+IAERA  LG
Sbjct:   11 FPTRIDLPEAEREPMVELLNARLADTADLYSQIKQAHWNVKGPNFFQLHTLFDQLAGEIFPFIDLIAERATALG 84          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A1M3KG07_9CHLR (DNA starvation/stationary phase protection protein Dps n=1 Tax=Chloroflexi bacterium 44-23 TaxID=1895927 RepID=A0A1M3KG07_9CHLR)

HSP 1 Score: 100 bits (249), Expect = 5.230e-25
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   40 FPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            FPT  D+PE  RE+VI LLNQ LAD  DL+SQTK AHWNVKG +FYQLH+LFDE A  + P++D IAER   LG
Sbjct:   11 FPTQVDIPERNRERVIDLLNQSLADIFDLHSQTKHAHWNVKGTDFYQLHILFDELAEMIFPYVDTIAERITALG 84          
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Match: A0A517QSZ6_9PLAN (DNA protection during starvation protein n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QSZ6_9PLAN)

HSP 1 Score: 100 bits (249), Expect = 5.230e-25
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   28 TTRTFPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAHWNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG 261
            T+  + T ND+ EETRE +I LLNQ LAD+ DLY+Q KQ+HWNVKGMNF QLHLLFD+ A + + + DMIAERA  LG
Sbjct:    5 TSLNYQTHNDISEETRESMIELLNQHLADTFDLYTQVKQSHWNVKGMNFMQLHLLFDDLAENFIRYADMIAERATALG 82          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56396.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0KE82_9CHLR1.390e-3575.00DNA starvation/stationary phase protection protein... [more]
A0A7W0PM85_9CHLR1.060e-3273.75DNA starvation/stationary phase protection protein... [more]
A0A6J4VDI3_9CHLR2.440e-3164.37DNA protection during starvation protein n=1 Tax=u... [more]
A0A7V1VZM1_9CHLR5.380e-2769.23DNA starvation/stationary phase protection protein... [more]
A0A7C7DTR5_9CHLR7.410e-2768.83DNA starvation/stationary phase protection protein... [more]
A0A2V8U4R7_9BACT2.600e-2666.22DNA starvation/stationary phase protection protein... [more]
UPI0019E084FA9.180e-2664.86DNA starvation/stationary phase protection protein... [more]
A0A7S7NN02_9BACT3.790e-2564.86DNA starvation/stationary phase protection protein... [more]
A0A1M3KG07_9CHLR5.230e-2564.86DNA starvation/stationary phase protection protein... [more]
A0A517QSZ6_9PLAN5.230e-2562.82DNA protection during starvation protein n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56396contigP-wetherbeei_contig56396:1..261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1229172.JQFA01000002_gene3499
Preferred namedps
PFAMsFerritin
Model size261
Max annot lvl1117|Cyanobacteria
KEGG koko:K04047
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.22e-25
EggNOG OGsCOG0783@1|root,COG0783@2|Bacteria,1G54E@1117|Cyanobacteria,1HAUY@1150|Oscillatoriales
DescriptionBelongs to the Dps family
Cds size261
COG categoryP
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.532717-CDS-P-wetherbeei_contig56396:0..2611683186838.532717-CDS-P-wetherbeei_contig56396:0..261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56396 1..261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56396.1.1prot_P-wetherbeei_contig56396.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56396 1..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56396.1.1

>prot_P-wetherbeei_contig56396.1.1 ID=prot_P-wetherbeei_contig56396.1.1|Name=mRNA_P-wetherbeei_contig56396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MATASKTKETTRTFPTANDLPEETREQVIALLNQQLADSLDLYSQTKQAH
WNVKGMNFYQLHLLFDEHAAHVLPWIDMIAERAVMLG
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mRNA from alignment at P-wetherbeei_contig56396:1..261-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56396.1.1 ID=mRNA_P-wetherbeei_contig56396.1.1|Name=mRNA_P-wetherbeei_contig56396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig56396:1..261- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACAGCCAGCAAGACCAAGGAGACGACGCGCACCTTCCCGACGGC GAACGACCTGCCGGAGGAGACGCGCGAGCAGGTGATCGCGCTGCTCAACC AGCAGCTCGCGGACTCGCTCGATCTCTATTCGCAGACGAAGCAGGCCCAC TGGAACGTGAAGGGCATGAATTTCTACCAGCTGCATCTGCTCTTTGACGA GCATGCGGCGCATGTGCTCCCGTGGATCGACATGATCGCGGAGCGGGCGG TGATGCTGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56396:1..261-

>mRNA_P-wetherbeei_contig56396.1.1 ID=mRNA_P-wetherbeei_contig56396.1.1|Name=mRNA_P-wetherbeei_contig56396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig56396:1..261- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACAGCCAGCAAGACCAAGGAGACGACGCGCACCTTCCCGACGGC
GAACGACCTGCCGGAGGAGACGCGCGAGCAGGTGATCGCGCTGCTCAACC
AGCAGCTCGCGGACTCGCTCGATCTCTATTCGCAGACGAAGCAGGCCCAC
TGGAACGTGAAGGGCATGAATTTCTACCAGCTGCATCTGCTCTTTGACGA
GCATGCGGCGCATGTGCTCCCGTGGATCGACATGATCGCGGAGCGGGCGG
TGATGCTGGGC
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