mRNA_P-wetherbeei_contig56370.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI001C3E7A0B (TetR/AcrR family transcriptional regulator n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E7A0B) HSP 1 Score: 134 bits (336), Expect = 3.630e-37 Identity = 70/107 (65.42%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSPCHFEIPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAAL 321
ARDRG+ E S++ GS LR AR RV AP LL RAQ AG VR DL P+DV FLITAAGH PC +IP LWRRYLGVILDGMRP ASPL+ APS E EAAL
Sbjct: 99 ARDRGMFETASSDVVGSPELRGARDRVTAPFAALLERAQAAGVVRDDLVPVDVLFLITAAGHAQPCQLQIPDLWRRYLGVILDGMRPAAASPLSGPAPSLGEIEAAL 205
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI001C3D12B6 (TetR/AcrR family transcriptional regulator n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D12B6) HSP 1 Score: 121 bits (304), Expect = 2.480e-32 Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 1
Query: 7 DRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSPCHFEIPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAAL 321
DRG+ +A S + GS RLREAR R+ AP LLRRAQ AG VR DLEP DV FL+TAA +P +PGLWRRY+ VILDGMRP ASPL AAPS E EAAL
Sbjct: 100 DRGMKDAATSRMIGSPRLREARRRITAPFGDLLRRAQAAGVVRADLEPEDVIFLVTAATSAAPRPLRMPGLWRRYMAVILDGMRPAGASPLPVAAPSPGELEAAL 204
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI001FEE4EB4 (TetR/AcrR family transcriptional regulator n=1 Tax=Patulibacter sp. SYSU D01012 TaxID=2817381 RepID=UPI001FEE4EB4) HSP 1 Score: 83.6 bits (205), Expect = 1.210e-17 Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 7 DRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSP-CHFEI----PGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAALA 324
DR +EAVG +F + RE +R+ + LLRRAQ+AG+VR DL P D+ FL+ A G + C ++ P LWRRYL V+LDG+RP A PL P+ ++ AA A
Sbjct: 91 DRTFLEAVGPALFSTESFRERNVRMLERLGQLLRRAQDAGQVRPDLTPEDLPFLVAAVGGATEKCPMQVDGCAPDLWRRYLCVVLDGLRPEGAHPLPGVPPTVEQLMAAKA 201
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI0003B38A0B (TetR/AcrR family transcriptional regulator n=1 Tax=Patulibacter americanus TaxID=588672 RepID=UPI0003B38A0B) HSP 1 Score: 83.2 bits (204), Expect = 2.690e-17 Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 7 DRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSP-CHFEI----PGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEA 315
DR +++VG ++F R RE R+ + LL R Q AG+VR DL P D+ F++ A G + C + P LWRRYLGV+LDGMRP A PL P+ D+ A
Sbjct: 108 DRTFLQSVGPDLFSQPRFRERNERIMGQLGELLERGQRAGQVRDDLSPEDLPFILAAVGGATEQCPVAMTGCSPDLWRRYLGVLLDGMRPAAAHPLPTGPPTLDQLMA 215
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: A0A7K0PKZ9_9ACTN (TetR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K0PKZ9_9ACTN) HSP 1 Score: 82.8 bits (203), Expect = 4.050e-17 Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVS-PCHFE---IPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEA 315
ARDRG +E+VG E+F L+ A + +L RAQ G VR DL DV FLI+A G + C P LWRRYLG++LDGMRP ASPL AP+F++ A
Sbjct: 115 ARDRGFLESVGPELFQEPTLQRRNAERMASLSVVLERAQADGLVRDDLRAEDVPFLISAVGGATGKCSRGGAIDPELWRRYLGIVLDGMRPAGASPLPVDAPTFEQLTA 223
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: A0A810L4I5_9ACTN (TetR family transcriptional regulator n=1 Tax=Actinocatenispora sera TaxID=390989 RepID=A0A810L4I5_9ACTN) HSP 1 Score: 80.1 bits (196), Expect = 2.830e-16 Identity = 49/110 (44.55%), Postives = 62/110 (56.36%), Query Frame = 1
Query: 1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVS-PCHFEIPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAALAG 327
A DR EA S + R+R A R+A E L RRA++AG +R D+ DV L AA + P +PGLWRRYL +I DG+RP A L AAP+ +F AA AG
Sbjct: 95 ANDRSFCEAATSIVRTDTRVRAASARLAETAEELTRRARDAGAIRTDVTGHDVVLLFNAAAQAAAPLGAAVPGLWRRYLYLIFDGLRPESARTLPVAAPTAADFTAAAAG 204
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: H0E431_9ACTN (Transcriptional regulator TetR family n=1 Tax=Patulibacter medicamentivorans TaxID=1097667 RepID=H0E431_9ACTN) HSP 1 Score: 79.0 bits (193), Expect = 1.120e-15 Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVS-PCHF--EI-PGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEA 315
ARDR +++VG E+F L+ + L+ RAQ AG +R DL DV FL++A G + C EI P LWRRYLG++LDG+RP+ A+PL AAP+F++ A
Sbjct: 111 ARDRSFLDSVGPELFREPSLQRRNQERMEHIRQLVARAQAAGLLRDDLRAEDVPFLLSAVGGATGQCTSGGEISPELWRRYLGIVLDGLRPVAATPLPVAAPTFEQLTA 219
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: A0A380P5Z2_STRGR (TetR family transcriptional regulator n=8 Tax=Streptomyces TaxID=1883 RepID=A0A380P5Z2_STRGR) HSP 1 Score: 75.1 bits (183), Expect = 3.210e-14 Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query: 7 DRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVS-PCHFEIPGLWRRYLGVILDGMRPLEASP-LTPAAPSFDEFE 312
DRG E++ +RE R+ +EGLL+RAQ G VR D+ P+DV L+ + P +P LWRRYLG++ DG+ P P L P APS +++E
Sbjct: 104 DRGFFESLSLPPRSHPEVREVEKRLIDAVEGLLKRAQRQGVVRADITPVDVLLLLGGVRQAAAPLSTAVPDLWRRYLGLVFDGLAPTRDEPSLAPPAPSREQYE 207
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: A0A1A3EIR4_9MYCO (Transcriptional regulator n=3 Tax=unclassified Mycobacterium TaxID=2642494 RepID=A0A1A3EIR4_9MYCO) HSP 1 Score: 74.3 bits (181), Expect = 5.820e-14 Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSPC--HFEIPGLWRRYLGVILDGMRPLEAS-PLTPAAPSFDEFEAAL 321
A DRGL EAV S+ +G R+ +RLR+ + L+ RA++ G +R D+ P D+ FL AG VS H E P LWRRY+ + LDGMRP P AA ++ +AA+
Sbjct: 107 ATDRGLREAVFSKAYGGDRVEASRLRLTPVISKLVERAKDDGYLRPDISPTDMPFLALLAGTVSEYAGHVE-PQLWRRYVAIFLDGMRPRRGQRPFAIAALDDEQLDAAM 215
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI000688346D (TetR/AcrR family transcriptional regulator n=1 Tax=Patulibacter minatonensis TaxID=298163 RepID=UPI000688346D) HSP 1 Score: 72.4 bits (176), Expect = 3.330e-13 Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 1 ARDRGLMEAVGSEIFGS---ARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSP-CHFEI-----PGLWRRYLGVILDGMRPLEASPLTPAAPSFDEF 309
ARDR +++VG E++G R EA + A L+ RAQ AG VR DL P DV FL++A G + C + P LWRRYLG+ILDG+RP A L +AP+ ++
Sbjct: 106 ARDRTFLQSVGPELYGDEHFVRRNEAMMNAIA---ALIARAQAAGVVRADLAPEDVPFLVSAVGGTTEHCGGGVIGGVSPELWRRYLGLILDGLRPEGAHELAESAPTREQL 214 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56370.1.1 >prot_P-wetherbeei_contig56370.1.1 ID=prot_P-wetherbeei_contig56370.1.1|Name=mRNA_P-wetherbeei_contig56370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp MEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLback to top mRNA from alignment at P-wetherbeei_contig56370:2..328+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56370.1.1 ID=mRNA_P-wetherbeei_contig56370.1.1|Name=mRNA_P-wetherbeei_contig56370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig56370:2..328+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56370:2..328+ >mRNA_P-wetherbeei_contig56370.1.1 ID=mRNA_P-wetherbeei_contig56370.1.1|Name=mRNA_P-wetherbeei_contig56370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig56370:2..328+ (Phaeothamnion wetherbeei SAG_119_79)back to top |