mRNA_P-wetherbeei_contig56368.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56368.1.1
Unique NamemRNA_P-wetherbeei_contig56368.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: A0A3D5AV89_9GAMM (4Fe-4S ferredoxin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5AV89_9GAMM)

HSP 1 Score: 241 bits (614), Expect = 1.940e-75
Identity = 115/172 (66.86%), Postives = 140/172 (81.40%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            +E+K+ YVT+EQEDS GG+VYH+PRNK+ M    TLPIVGK K GE +KE LLE WQG+VK+TGL++NF ER+++I+ + GGF VK+SK  Y T AVLL IGRRGTPRKLGVPGEE PKVVYRLIDAEQYR + VLV GGGD+A+EAA++ A E GT+V L YR EAF R+K
Sbjct:  186 MEKKLRYVTIEQEDSFGGTVYHFPRNKLVMTAPVTLPIVGKMKFGEVSKEKLLEFWQGVVKKTGLRVNFFERMETIKPVSGGFVVKTSKGEYPTRAVLLAIGRRGTPRKLGVPGEEQPKVVYRLIDAEQYRGQQVLVVGGGDAALEAALACADESGTRVTLSYRSEAFGRVK 357
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: A0A1B4XEI1_9GAMM (4Fe-4S ferredoxin n=1 Tax=Sulfuricaulis limicola TaxID=1620215 RepID=A0A1B4XEI1_9GAMM)

HSP 1 Score: 239 bits (609), Expect = 1.120e-74
Identity = 115/172 (66.86%), Postives = 140/172 (81.40%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            +E K+ +VTLEQEDSLGG+VYHYPRNKI M     LPI+GK K+ E +KEAL+E WQG+VK+TGLK+NF ER+++I +   GF VK+S+ +Y T AVLL IGRRGTPRKL VPGEE PKVVYRLID EQYR++ VLV GGGDSA+EAA+++A EPGT V L YRGEAF R+K
Sbjct:  187 LEHKLKFVTLEQEDSLGGTVYHYPRNKIVMTAPMQLPILGKVKMSEISKEALMEFWQGVVKKTGLKLNFSERMETISKNVNGFTVKTSRGSYNTKAVLLAIGRRGTPRKLEVPGEELPKVVYRLIDPEQYRNQQVLVVGGGDSALEAALALADEPGTGVTLSYRGEAFGRVK 358
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: UPI001AD08176 (Partial Ferredoxin--NADP reductase n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI001AD08176)

HSP 1 Score: 226 bits (577), Expect = 7.720e-72
Identity = 109/172 (63.37%), Postives = 136/172 (79.07%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            I+ ++ Y  +EQEDSLGG+VYHYPRNKI M     L +VGK KLGE  KEALL+ WQG+V RTGL+I+FRER++ IER DGGF V++S+  Y T +VLL +GRRGTPRKL VPGEE+ KVVYRL+D  QY  + VLV GGGDSA+EAA+++A +PGT V L YRGEAF+R+K
Sbjct:   29 IQHQLRYRIVEQEDSLGGTVYHYPRNKIAMTAPVQLALVGKVKLGEVQKEALLQFWQGVVARTGLQISFRERMEGIERRDGGFVVQTSRGVYRTRSVLLAMGRRGTPRKLDVPGEEASKVVYRLVDPMQYAGQAVLVVGGGDSALEAAIAVAEQPGTDVVLSYRGEAFARVK 200
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: W0SEA7_9PROT (FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Sulfuritalea hydrogenivorans sk43H TaxID=1223802 RepID=W0SEA7_9PROT)

HSP 1 Score: 228 bits (580), Expect = 2.420e-70
Identity = 114/172 (66.28%), Postives = 135/172 (78.49%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            +E+K+ +VTLEQEDSLGG+VYHYPRNKI M     LP+ GK KLGE +KE+LL  WQ IV+R G+KI F +R++ +  +D GF VK+ +A Y T AVLL IGRRGTPRKL VPGEE PKVVYRLID EQYR++ VLV GGGDSAIEAA++IAAE GT V L YRG AF RIK
Sbjct:  186 MEKKLRFVTLEQEDSLGGTVYHYPRNKIVMTQPVVLPLAGKAKLGEISKESLLAFWQDIVERFGMKIEFGQRVEKVTAVDNGFIVKTDRAEYSTRAVLLAIGRRGTPRKLEVPGEELPKVVYRLIDPEQYRNQHVLVVGGGDSAIEAAVAIAAEEGTTVTLSYRGAAFGRIK 357
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: A0A7L5YKD0_9PROT (NAD(P)-binding domain-containing protein n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A7L5YKD0_9PROT)

HSP 1 Score: 227 bits (578), Expect = 5.080e-70
Identity = 114/172 (66.28%), Postives = 134/172 (77.91%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            I+ K+ Y  +EQEDSLGG+VYHYPRNK+ M     LPIVGK ++ E +KEALLE W GIV +T LKI+FRER++SIE    GF+VK+S   Y   AVLL IGRRGTPRKL VPGEE PKVVYRLID EQYR + VLV GGGDSA+EAA++IAAEP T VAL YRG+AF R+K
Sbjct:  187 IQHKLRYRIVEQEDSLGGTVYHYPRNKVIMTAPVQLPIVGKVRMSEISKEALLEFWNGIVGKTDLKISFRERMESIESSGRGFKVKTSGGEYSARAVLLAIGRRGTPRKLDVPGEELPKVVYRLIDPEQYRGQKVLVIGGGDSALEAALAIAAEPDTTVALSYRGDAFGRVK 358
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: A0A1F6T791_9PROT (4Fe-4S ferredoxin n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_62_13 TaxID=1817756 RepID=A0A1F6T791_9PROT)

HSP 1 Score: 226 bits (577), Expect = 1.290e-69
Identity = 108/172 (62.79%), Postives = 136/172 (79.07%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            +E+K+ +VT+EQED+ GG+VYHYPRNK+ M     LPIVGK K  E +KE LLE WQG++++TGLKINF ER++++     GF VK+++A Y T AVLL IGRRGTPRKL VPGEE  KVVYRLIDAEQYR + VLV GGGD+A+EAA++ + +PGTKVAL YR EAF R+K
Sbjct:  207 LEKKLRFVTIEQEDAFGGTVYHYPRNKVVMTAPVQLPIVGKMKFSEVSKERLLEFWQGVIRKTGLKINFSERMETLRPDGKGFVVKTARAEYRTRAVLLAIGRRGTPRKLEVPGEECAKVVYRLIDAEQYRGQHVLVVGGGDAALEAALACSEQPGTKVALSYRSEAFGRVK 378
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: A0A1J5SSP3_9ZZZZ (Ferredoxin--NADP reductase n=5 Tax=root TaxID=1 RepID=A0A1J5SSP3_9ZZZZ)

HSP 1 Score: 225 bits (574), Expect = 1.920e-69
Identity = 108/172 (62.79%), Postives = 136/172 (79.07%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            IE+K+ YVT+EQE +LGG+++ YPRNK+ M     LPIVGK    E +KE LLE WQGI+++TG+K+NF ER+++I R D GF VK++K +YET AVLL IGRRGTPRKLGVPGE+ PKVVYRLI+ EQY++  VLV GGGDSA+EAAM+IA +PGT V L YR +AF R K
Sbjct:  185 IEKKLRYVTIEQETALGGAIFQYPRNKVVMTAPVKLPIVGKVHFQEVSKEKLLEFWQGIIQKTGMKLNFNERMENISRTDNGFIVKTTKGSYETRAVLLAIGRRGTPRKLGVPGEDLPKVVYRLIEPEQYQNMHVLVVGGGDSALEAAMAIAEQPGTTVTLSYRSDAFGRGK 356
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: A0A7Y8M602_9PROT (NAD(P)-binding domain-containing protein n=1 Tax=Hydrogenophilaceae bacterium TaxID=2723029 RepID=A0A7Y8M602_9PROT)

HSP 1 Score: 224 bits (571), Expect = 5.850e-69
Identity = 111/172 (64.53%), Postives = 133/172 (77.33%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            I+  + Y  +EQEDSLGG+VYHYPRNKI M     LP+VGK K+ E +KEALL+ WQGIV +TGLKINF ER++ I     GF VK+S+  Y T AVLL IGRRGTPRKLGV GEE PKVVYRLID EQY+ + VLV GGGDSA+EAA++I+ +PGT+V L YRGEAF R+K
Sbjct:  188 IQHNLRYRVVEQEDSLGGTVYHYPRNKIVMTAPVNLPLVGKVKMTEISKEALLDFWQGIVSKTGLKINFNERMEEIRPDGEGFLVKTSQGEYVTRAVLLAIGRRGTPRKLGVEGEELPKVVYRLIDPEQYKGQKVLVVGGGDSALEAALAISEQPGTEVILSYRGEAFGRVK 359
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: A0A537ARY6_9PROT (4Fe-4S dicluster domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537ARY6_9PROT)

HSP 1 Score: 222 bits (566), Expect = 3.120e-68
Identity = 106/172 (61.63%), Postives = 135/172 (78.49%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            I+ K+ Y  +EQE+SLGG+V+HYPRNKI M     LP++GK K+ E +KE LLE W  +VK+TGLKI+FRER++ I+RI+GGF VK+ + +Y    VLL IGRRGTPRKL VPGEE+ KVVYRLID EQY+ + VLV GGGDSA+EAA++IA + G+KV L YR EAFSR+K
Sbjct:  187 IQYKLKYKLIEQEESLGGAVFHYPRNKIAMTAPVKLPLIGKVKMTEISKEKLLEFWNAVVKKTGLKIDFRERMEEIQRIEGGFTVKTQRGSYPACVVLLAIGRRGTPRKLNVPGEETSKVVYRLIDPEQYKGQRVLVVGGGDSALEAAVAIAEQKGSKVTLSYRSEAFSRVK 358
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BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Match: A0A258ZDJ1_9PROT (4Fe-4S ferredoxin n=1 Tax=Gallionellales bacterium 24-53-125 TaxID=1970510 RepID=A0A258ZDJ1_9PROT)

HSP 1 Score: 222 bits (566), Expect = 3.290e-68
Identity = 105/172 (61.05%), Postives = 137/172 (79.65%), Query Frame = 1 
Query:    1 IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKEALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLTIGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMSIAAEPGTKVALCYRGEAFSRIK 516
            IE+K+ YVTLEQE SLGG+++HYPRNK+ M     LPI+G+  +GE +KEALLE W  ++ +TG+K+N+ ER+++I +I  GF VK++K +Y+T A+LL IGRRGTPRKL VPGE+ PKVVYRLID EQYR+  VLV GGGDSA+EAA++IA +PGT V+L YR EAF R K
Sbjct:  188 IEKKLRYVTLEQESSLGGAIFHYPRNKVAMTAPVKLPIIGQVNMGEISKEALLEFWNKVIHKTGMKLNYNERMETITQIANGFIVKTTKQSYQTRAILLAIGRRGTPRKLEVPGEDLPKVVYRLIDPEQYRNMHVLVVGGGDSALEAAIAIAEQPGTTVSLSYRSEAFGRGK 359
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56368.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5AV89_9GAMM1.940e-7566.864Fe-4S ferredoxin n=1 Tax=Gammaproteobacteria bact... [more]
A0A1B4XEI1_9GAMM1.120e-7466.864Fe-4S ferredoxin n=1 Tax=Sulfuricaulis limicola T... [more]
UPI001AD081767.720e-7263.37Partial Ferredoxin--NADP reductase n=1 Tax=Burkhol... [more]
W0SEA7_9PROT2.420e-7066.28FAD-dependent pyridine nucleotide-disulfide oxidor... [more]
A0A7L5YKD0_9PROT5.080e-7066.28NAD(P)-binding domain-containing protein n=4 Tax=P... [more]
A0A1F6T791_9PROT1.290e-6962.794Fe-4S ferredoxin n=1 Tax=Candidatus Muproteobacte... [more]
A0A1J5SSP3_9ZZZZ1.920e-6962.79Ferredoxin--NADP reductase n=5 Tax=root TaxID=1 Re... [more]
A0A7Y8M602_9PROT5.850e-6964.53NAD(P)-binding domain-containing protein n=1 Tax=H... [more]
A0A537ARY6_9PROT3.120e-6861.634Fe-4S dicluster domain-containing protein n=1 Tax... [more]
A0A258ZDJ1_9PROT3.290e-6861.054Fe-4S ferredoxin n=1 Tax=Gallionellales bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56368contigP-wetherbeei_contig56368:1..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog580332.Slit_0525
PFAMsPyr_redox_3
Model size516
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.5e-69
EggNOG OGsCOG0492@1|root,COG1145@1|root,COG0492@2|Bacteria,COG1145@2|Bacteria,1PPH1@1224|Proteobacteria,2W9GU@28216|Betaproteobacteria,44WKA@713636|Nitrosomonadales
DescriptionFAD-dependent pyridine nucleotide-disulphide oxidoreductase
Cds size516
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.271565-CDS-P-wetherbeei_contig56368:0..5161683186838.271565-CDS-P-wetherbeei_contig56368:0..516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56368 1..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56368.1.1prot_P-wetherbeei_contig56368.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56368 1..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56368.1.1

>prot_P-wetherbeei_contig56368.1.1 ID=prot_P-wetherbeei_contig56368.1.1|Name=mRNA_P-wetherbeei_contig56368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
IEQKISYVTLEQEDSLGGSVYHYPRNKITMAGHFTLPIVGKFKLGETTKE
ALLEMWQGIVKRTGLKINFRERLDSIERIDGGFRVKSSKATYETGAVLLT
IGRRGTPRKLGVPGEESPKVVYRLIDAEQYRDKCVLVAGGGDSAIEAAMS
IAAEPGTKVALCYRGEAFSRIK
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mRNA from alignment at P-wetherbeei_contig56368:1..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56368.1.1 ID=mRNA_P-wetherbeei_contig56368.1.1|Name=mRNA_P-wetherbeei_contig56368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig56368:1..516+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAGCAGAAGATCAGCTATGTCACGCTGGAGCAGGAGGATTCGCTGGG
TGGGTCGGTGTATCACTATCCGCGCAACAAGATCACCATGGCCGGTCATT
TCACCCTGCCCATTGTTGGCAAGTTCAAGCTGGGCGAGACCACCAAGGAA
GCGTTGCTGGAAATGTGGCAGGGCATTGTCAAGCGCACCGGACTGAAAAT
CAACTTTCGCGAGCGGCTTGATTCGATCGAACGCATCGATGGCGGCTTTC
GCGTCAAGAGCAGCAAGGCTACCTACGAGACCGGTGCCGTGCTGCTGACC
ATCGGCCGGCGCGGCACGCCGCGGAAACTCGGTGTGCCGGGCGAGGAGTC
GCCCAAGGTGGTGTATCGGCTCATCGACGCGGAGCAGTATCGCGACAAGT
GTGTCCTGGTGGCCGGTGGTGGCGACAGTGCCATCGAGGCTGCGATGTCG
ATCGCAGCCGAGCCGGGGACGAAAGTGGCGCTTTGCTATCGGGGCGAGGC
GTTTAGCCGCATCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56368:1..516+

>mRNA_P-wetherbeei_contig56368.1.1 ID=mRNA_P-wetherbeei_contig56368.1.1|Name=mRNA_P-wetherbeei_contig56368.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig56368:1..516+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAGCAGAAGATCAGCTATGTCACGCTGGAGCAGGAGGATTCGCTGGG
TGGGTCGGTGTATCACTATCCGCGCAACAAGATCACCATGGCCGGTCATT
TCACCCTGCCCATTGTTGGCAAGTTCAAGCTGGGCGAGACCACCAAGGAA
GCGTTGCTGGAAATGTGGCAGGGCATTGTCAAGCGCACCGGACTGAAAAT
CAACTTTCGCGAGCGGCTTGATTCGATCGAACGCATCGATGGCGGCTTTC
GCGTCAAGAGCAGCAAGGCTACCTACGAGACCGGTGCCGTGCTGCTGACC
ATCGGCCGGCGCGGCACGCCGCGGAAACTCGGTGTGCCGGGCGAGGAGTC
GCCCAAGGTGGTGTATCGGCTCATCGACGCGGAGCAGTATCGCGACAAGT
GTGTCCTGGTGGCCGGTGGTGGCGACAGTGCCATCGAGGCTGCGATGTCG
ATCGCAGCCGAGCCGGGGACGAAAGTGGCGCTTTGCTATCGGGGCGAGGC
GTTTAGCCGCATCAAG
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