mRNA_P-wetherbeei_contig56367.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: UPI001C3C7F50 (RluA family pseudouridine synthase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C7F50) HSP 1 Score: 289 bits (740), Expect = 3.770e-96 Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALRIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
H+GGTLVHGLLAHAIAGG+DPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLR+R +ER Y LVHG TPPAL +DRPIGRDR++RTR AID V+GREAVTH+R LE LGR +LLE RLETGRTHQIRVHLESVGHPVVGDRVYGRRE LGL+RQFLHAARLAFPHP
Sbjct: 100 HAGGTLVHGLLAHAIAGGADPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRDRLIERHYTVLVHGRTPPALTVDRPIGRDRKVRTRQAIDVVDGREAVTHLRLLEPLGRVSLLEARLETGRTHQIRVHLESVGHPVVGDRVYGRREETLGLDRQFLHAARLAFPHP 269
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: UPI001C3DD157 (RluA family pseudouridine synthase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3DD157) HSP 1 Score: 288 bits (737), Expect = 1.040e-95 Identity = 147/170 (86.47%), Postives = 158/170 (92.94%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALRIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
H+GGTLVHGLLAHA+AGG+DP+RPGIVHRLDRDTSGLLVVARSERAHRRLQR+LR+R +ER YLALVHGA PPAL IDRPIGRDRR RTRMAID EGREAVTHVR LE LGR TL+EVRLETGRTHQIRVHLE+ GHPVVGDRVYGRR+ +LGLERQFLHAARLAFPHP
Sbjct: 103 HAGGTLVHGLLAHAVAGGADPSRPGIVHRLDRDTSGLLVVARSERAHRRLQRLLRDRRVERHYLALVHGAPPPALTIDRPIGRDRRNRTRMAID-AEGREAVTHVRVLERLGRMTLVEVRLETGRTHQIRVHLEAAGHPVVGDRVYGRRQPDLGLERQFLHAARLAFPHP 271
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A7W0P514_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0P514_9ACTN) HSP 1 Score: 200 bits (508), Expect = 4.420e-61 Identity = 113/172 (65.70%), Postives = 125/172 (72.67%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALR--IDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
HS GTLVHGLL HA+AGG P RPGIVHR+DRDTSGLLVVARSE AHRRLQR++R RE+ER Y ALV G P + R I+ PIGRDR TR ++D R AVTH E L R LL VRLETGRTHQIRVHL ++ PV GD VYG +LGL RQFLHAARL F HP
Sbjct: 103 HSSGTLVHGLLGHAVAGGQAPHRPGIVHRIDRDTSGLLVVARSEEAHRRLQRLVRHREIERAYQALVRGR-PRSHRGKIEAPIGRDRADPTRQSLDTATPRSAVTHFEVAELLARHALLTVRLETGRTHQIRVHLRAIELPVAGDPVYGVA-GDLGLRRQFLHAARLTFAHP 272
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A538CKG3_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CKG3_9ACTN) HSP 1 Score: 197 bits (500), Expect = 6.360e-60 Identity = 114/171 (66.67%), Postives = 127/171 (74.27%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPAL-RIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
H+ GTLVHGLLAH +AGG + RPGIVHRLDRDTSGL+VVARSE AHRRLQ ++R RELER YLALV G RI+ IGRDRR R ++D REAVTH +E L R LL+VRLETGRTHQIRVHL ++G PV GD VYGR LGLERQFLHAA LAF HP
Sbjct: 102 HATGTLVHGLLAHDVAGG-EADRPGIVHRLDRDTSGLMVVARSEEAHRRLQAVVRRRELERRYLALVVGRPRSRSGRIEASIGRDRRDPMRHSLDTETPREAVTHFELVELLPRHALLDVRLETGRTHQIRVHLSAIGLPVAGDLVYGR-PLELGLERQFLHAASLAFTHP 270
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A537TL05_9ACTN (Pseudouridine synthase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537TL05_9ACTN) HSP 1 Score: 195 bits (496), Expect = 1.030e-59 Identity = 111/171 (64.91%), Postives = 126/171 (73.68%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPP-ALRIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
H+GGTLVHGLL HAIAGG +P RPG+VHRLDRDTSGLLVVARSE AHRRLQ +LR R L R Y+ALV G A RI+ IGRDR TR++++ REAVT +E L L+ VRLETGRTHQIRVHL ++ PV GD VYG +LGLERQFLHAARLAF HP
Sbjct: 73 HAGGTLVHGLLGHAIAGGDEPDRPGVVHRLDRDTSGLLVVARSEDAHRRLQGLLRRRALTREYVALVRGRPRSRAGRIEAAIGRDRHDPTRVSLETDVPREAVTGFELVELLPEHALIRVRLETGRTHQIRVHLSAIDLPVAGDPVYGV-PGDLGLERQFLHAARLAFEHP 242
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A538DQ42_9ACTN (Pseudouridine synthase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DQ42_9ACTN) HSP 1 Score: 196 bits (497), Expect = 2.200e-59 Identity = 113/171 (66.08%), Postives = 126/171 (73.68%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPAL-RIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
HS GTLVHGLLAH AGG D RPGIVHRLDRDTSGL+VVARS+ +HRRLQ ++R R LER Y ALV G RI+ PIGRDRR R ++D R+AVTH +E L R+ LL+VRLETGRTHQIRVHL S+ PV GD VYGR LGLERQFLHAARLAF HP
Sbjct: 112 HSSGTLVHGLLAHDAAGGDDD-RPGIVHRLDRDTSGLMVVARSDESHRRLQALVRRRALERHYRALVVGRPRSRSGRIEAPIGRDRRDPLRHSLDTETPRDAVTHFEVVELLPRYALLDVRLETGRTHQIRVHLASIDLPVAGDPVYGRPH-ELGLERQFLHAARLAFEHP 280
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A419GWK3_9ACTN (Pseudouridine synthase n=1 Tax=Gaiellales bacterium TaxID=2093372 RepID=A0A419GWK3_9ACTN) HSP 1 Score: 195 bits (496), Expect = 3.120e-59 Identity = 105/181 (58.01%), Postives = 127/181 (70.17%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPAL-RIDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLED----------LGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
H+ GTLVHGLLAH+IAGG P RPGIVHRLD+DTSGL++VA+SE +HR L ML E+ERTYLALVHG ++ P+GRD R +M++ GR+AVTH R E G ++LLEVRLETGRTHQIRVHL ++GHPV GD YGRR+ LG+ RQFLH+ RL F HP
Sbjct: 101 HARGTLVHGLLAHSIAGGDSPRRPGIVHRLDKDTSGLMIVAKSEESHRLLVDMLAGHEVERTYLALVHGVFETKEGTVEAPVGRDAARRQQMSVAARGGRDAVTHFRVAESWPADSRERDRAGGYSLLEVRLETGRTHQIRVHLAAIGHPVAGDATYGRRKDTLGVGRQFLHSHRLRFGHP 281
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A7C1KQ48_9ACTN (Pseudouridine synthase n=2 Tax=Bacteria TaxID=2 RepID=A0A7C1KQ48_9ACTN) HSP 1 Score: 194 bits (494), Expect = 1.060e-58 Identity = 107/185 (57.84%), Postives = 121/185 (65.41%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPAL-RIDRPIGRDRRLRTRMAIDPVEGREAVTHVR--------------RLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
H GTLVHGLLAH +AGG P RPGIVHRLD+DTSGLLVVAR + HR L MLR ++ERTY+ALVHG ID P+GRD R RM++ GR AVTH R R E +LLEVRL+TGRTHQIRVHLE++GHPV GD Y RR LG+ RQFLHA RL F HP
Sbjct: 112 HDHGTLVHGLLAHQVAGGESPHRPGIVHRLDKDTSGLLVVARDDATHRLLVEMLRRHQIERTYIALVHGYFETREGTIDAPVGRDAANRQRMSVAGTAGRAAVTHFRVIRSWAGDGSGRGRRKEPGAGLSLLEVRLDTGRTHQIRVHLEAIGHPVAGDTTYSRRRDRLGIGRQFLHATRLTFSHP 296
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A538H4T7_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538H4T7_9ACTN) HSP 1 Score: 193 bits (491), Expect = 1.260e-58 Identity = 112/172 (65.12%), Postives = 128/172 (74.42%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALR--IDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
H+ GTLVHGL+ +AGG + RPGIVHRLDRDTSGLLVVARS AHRRL+R++R R+LER YLALV G P + R I+ PIGRDR TR ++D R+AVTH +E L R LL VRLETGRTHQIRVHL ++ PV GD VYGR LGLERQFLHAARLAFPHP
Sbjct: 101 HTTGTLVHGLVG--VAGGGEEGRPGIVHRLDRDTSGLLVVARSTEAHRRLERLVRRRKLERRYLALVCGR-PRSRRGTIEAPIGRDRHDPTRQSLDTATPRDAVTHFEVVELLPRHALLGVRLETGRTHQIRVHLAAIDLPVAGDPVYGR-PGELGLERQFLHAARLAFPHP 268
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Match: A0A538HY88_9ACTN (Pseudouridine synthase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HY88_9ACTN) HSP 1 Score: 193 bits (491), Expect = 1.410e-58 Identity = 114/172 (66.28%), Postives = 127/172 (73.84%), Query Frame = 1
Query: 1 HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLQRMLRERELERTYLALVHGATPPALR--IDRPIGRDRRLRTRMAIDPVEGREAVTHVRRLEDLGRFTLLEVRLETGRTHQIRVHLESVGHPVVGDRVYGRREANLGLERQFLHAARLAFPHP 510
H+ GTLVHGLLAH AGG D RPGIVHRLDRDTSGL+VVARSE AHRRLQ ++R EL+R YLALV G P + R I+ PIGRDRR R ++ REAVTH +E L R LL+VRLETGRTHQIRVHL +V PV GD +YGR LGLERQFLHAARL FPHP
Sbjct: 103 HAEGTLVHGLLAHDAAGG-DAERPGIVHRLDRDTSGLMVVARSEEAHRRLQGLVRRHELDRHYLALVVGR-PRSRRGQIEAPIGRDRRDPLRQSLSTDSPREAVTHFEIVELLPRHALLDVRLETGRTHQIRVHLGAVDLPVAGDPLYGRPH-ELGLERQFLHAARLGFPHP 271 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56367.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56367.1.1 >prot_P-wetherbeei_contig56367.1.1 ID=prot_P-wetherbeei_contig56367.1.1|Name=mRNA_P-wetherbeei_contig56367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp HSGGTLVHGLLAHAIAGGSDPTRPGIVHRLDRDTSGLLVVARSERAHRRLback to top mRNA from alignment at P-wetherbeei_contig56367:7..516- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56367.1.1 ID=mRNA_P-wetherbeei_contig56367.1.1|Name=mRNA_P-wetherbeei_contig56367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig56367:7..516- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56367:7..516- >mRNA_P-wetherbeei_contig56367.1.1 ID=mRNA_P-wetherbeei_contig56367.1.1|Name=mRNA_P-wetherbeei_contig56367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig56367:7..516- (Phaeothamnion wetherbeei SAG_119_79)back to top |