mRNA_P-wetherbeei_contig56347.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56347.1.1
Unique NamemRNA_P-wetherbeei_contig56347.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: A0A521MD47_9HYPH (Dihydrofolate reductase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MD47_9HYPH)

HSP 1 Score: 112 bits (280), Expect = 7.220e-29
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            +TR V  L +DP     +LWNP  A  D AW RLG++ D  +AVVGG  +FGLFL +GYD FFL+  + A+VP GR VFP +      TP+DVL +H   L   R+LD A+ TVLEEW
Sbjct:   71 LTRRVQRLMVDPNNPKAVLWNPATAPFDEAWQRLGVD-DGMLAVVGGTDVFGLFLSIGYDAFFLTRAQ-ASVPRGRPVFPGVG--KGTTPEDVLTQHGLVLRKSRVLDPATGTVLEEW 184          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: UPI001E57BC73 (dihydrofolate reductase n=1 Tax=Reyranella aquatilis TaxID=2035356 RepID=UPI001E57BC73)

HSP 1 Score: 111 bits (277), Expect = 2.050e-28
Identity = 56/118 (47.46%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            +TR V  + +DP   + +LWNP  A  + AW++L L+   T+AVVGG  +FGLFL++GYD FFL+    A+VP GR VFP +    + TP++VLK+H   L + RMLD A++T LEEW
Sbjct:   71 LTRRVDRVIVDPDNPNAVLWNPASAPFEEAWMKLNLDGG-TLAVVGGTDVFGLFLNIGYDCFFLTRA-DASVPRGRPVFPGVGR--NATPEEVLKKHEMMLASTRMLDAATNTRLEEW 184          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: UPI001C24DB43 (dihydrofolate reductase n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001C24DB43)

HSP 1 Score: 109 bits (272), Expect = 1.160e-27
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            +TR V  +  DP   + +LWNP  A  + AWL+L L  + T+AVVGG  +FGLFL++GYD+FFL+    A+VP GR VFP +    + TP++VL++H   L   RMLD A++T +EEW
Sbjct:   71 LTRRVERVIADPDNANAVLWNPASAPFEEAWLKLNLE-NGTLAVVGGTDVFGLFLNIGYDSFFLTRA-DASVPRGRPVFPGVGR--NATPEEVLQKHGMVLRETRMLDAATNTRVEEW 184          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: A0A259MJZ8_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MJZ8_9PROT)

HSP 1 Score: 108 bits (271), Expect = 1.640e-27
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            +TR V  +  DP   + +LWNP  A  + AW++L L AD T+AVVGG  +FGLFL++GYD FFL+    A+VP GR VFP +      TP++VL RH   L   RMLD A++T LE W
Sbjct:   71 LTRRVERVVPDPDNANAILWNPASAPFEEAWMKLNL-ADGTLAVVGGTDVFGLFLNIGYDVFFLTR-TDASVPRGRPVFPGVGN--TATPEEVLARHGMVLRDTRMLDPATNTRLEAW 184          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: A0A521LSD5_9HYPH (Dihydrofolate reductase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LSD5_9HYPH)

HSP 1 Score: 108 bits (269), Expect = 3.190e-27
Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            +TR V  +  DP   + +LWNP  A  + AWLRL +  + T+AVVGG  +FGLFL++GYD FFL+  + A+VP GR VFP +     +TP+ V+KRH   L + RMLD A+ T LEEW
Sbjct:   70 LTRRVERVIPDPNNPNAVLWNPVTAPFEEAWLRLNIP-EGTLAVVGGTDVFGLFLNIGYDAFFLTRAQ-ASVPRGRPVFPGIGKR--VTPETVMKRHGLVLRSTRMLDEATGTKLEEW 183          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: A0A1Q3KQZ0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 65-37 TaxID=1895711 RepID=A0A1Q3KQZ0_9PROT)

HSP 1 Score: 106 bits (264), Expect = 1.900e-26
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            +TR V  +  DP+  + +LWNP  A  + AW++LG   D T+AVVGG  +F LFL +GYDTF+LS    + VP GR VFP +  H   TP++VL++H   L   RMLD A+   +EEW
Sbjct:   71 LTRRVERIVPDPRNANAVLWNPATAPFEEAWMKLGAG-DGTLAVVGGTDVFFLFLSIGYDTFYLSRAPGS-VPRGRPVFPGIGPH-GATPEEVLQKHGMVLKGRRMLDEAAGVEVEEW 185          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: A0A2W5YYW3_9CHLR (Dihydrofolate reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W5YYW3_9CHLR)

HSP 1 Score: 105 bits (261), Expect = 3.120e-26
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEWTR 360
            +TR +AAL+ DP+    LLWNP GASL+ A   L +     +AV+GG  +FGLFL++GYD+F LS  ++  +PGGR++FPE+    ++TP+++L     +   E++LD A+   L  W+R
Sbjct:   52 LTRRIAALARDPRNSRALLWNPAGASLEVALCALDVP-HGVLAVIGGTDVFGLFLEIGYDSFHLSRAKNVRLPGGRMLFPEV--RHEVTPEEMLASRGLKPGPEQVLDAAAGVTLVTWSR 168          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: A0A6A7M554_9PROT (Dihydrofolate reductase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7M554_9PROT)

HSP 1 Score: 104 bits (260), Expect = 7.040e-26
Identity = 56/118 (47.46%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            VTR V  +  DP   + +LWNP  A  D AW +L +  D T+AVVGG  +FGLFL +GYD FFL+    A+VP GR VFP +     +  ++ LKR+   L   RMLD AS+TV+EEW
Sbjct:   70 VTRRVQRIVHDPDNPNAILWNPSTAPFDEAWQKLNVE-DGTLAVVGGTDVFGLFLSIGYDAFFLTRAL-ASVPRGRPVFPGVGN--GVPAEEALKRYGLVLKNTRMLDPASETVVEEW 183          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: A0A521QI46_9HYPH (Dihydrofolate reductase n=2 Tax=Reyranella TaxID=445219 RepID=A0A521QI46_9HYPH)

HSP 1 Score: 104 bits (260), Expect = 7.400e-26
Identity = 53/118 (44.92%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            +TR V  +  DP+  + +LWNP  A  + AW++LG   + T+AVVGG  +FGLFL++GYD F+L+  + A+VP GR VFP + GH  L P +VL++H   L + R++D A++T +EEW
Sbjct:   71 LTRRVERIVPDPRNANAVLWNPATAPFEEAWMKLGAP-EGTLAVVGGTDVFGLFLNIGYDVFYLTRAQ-ASVPRGRPVFPGV-GHGVL-PDEVLQKHGMVLRSSRVVDEATETRVEEW 184          
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Match: A0A512N2U6_9HYPH (Uncharacterized protein n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512N2U6_9HYPH)

HSP 1 Score: 103 bits (258), Expect = 1.440e-25
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQLFGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYRLHAERMLDVASDTVLEEW 354
            ++R+V  +  DP+  + +LWNP  A  D AW +L +  D T+AVVGG  +F LFL +GYD F+LS   S +VP GR VFP + GH  +  ++ LK+H   L    MLD  S+TV+EEW
Sbjct:   70 LSRQVHRIVPDPRNPNAILWNPATAPFDEAWQKLNIG-DGTLAVVGGTDVFALFLTIGYDAFYLSRAASISVPRGRPVFPGV-GH-GVPAEEPLKKHGLVLKNTHMLDPVSETVVEEW 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521MD47_9HYPH7.220e-2950.00Dihydrofolate reductase n=1 Tax=Reyranella sp. Tax... [more]
UPI001E57BC732.050e-2847.46dihydrofolate reductase n=1 Tax=Reyranella aquatil... [more]
UPI001C24DB431.160e-2746.61dihydrofolate reductase n=1 Tax=Reyranella sp. MMS... [more]
A0A259MJZ8_9PROT1.640e-2748.31Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A521LSD5_9HYPH3.190e-2748.31Dihydrofolate reductase n=1 Tax=Reyranella sp. Tax... [more]
A0A1Q3KQZ0_9PROT1.900e-2645.76Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2W5YYW3_9CHLR3.120e-2641.67Dihydrofolate reductase n=1 Tax=Chloroflexi bacter... [more]
A0A6A7M554_9PROT7.040e-2647.46Dihydrofolate reductase n=1 Tax=Rhodospirillales b... [more]
A0A521QI46_9HYPH7.400e-2644.92Dihydrofolate reductase n=2 Tax=Reyranella TaxID=4... [more]
A0A512N2U6_9HYPH1.440e-2544.92Uncharacterized protein n=1 Tax=Reyranella soli Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56347contigP-wetherbeei_contig56347:3..365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1205680.CAKO01000002_gene3065
PFAMsDHFR_1
Model size363
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.34e-28
EggNOG OGsCOG0262@1|root,COG0262@2|Bacteria,1Q00Z@1224|Proteobacteria,2TTFQ@28211|Alphaproteobacteria
DescriptionKey enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
Cds size363
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186837.9619937-CDS-P-wetherbeei_contig56347:2..3651683186837.9619937-CDS-P-wetherbeei_contig56347:2..365Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56347 3..365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56347.1.1prot_P-wetherbeei_contig56347.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56347 3..365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56347.1.1

>prot_P-wetherbeei_contig56347.1.1 ID=prot_P-wetherbeei_contig56347.1.1|Name=mRNA_P-wetherbeei_contig56347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
VTREVAALSLDPKRIHGLLWNPGGASLDRAWLRLGLNADATIAVVGGAQL
FGLFLDLGYDTFFLSHCRSAAVPGGRLVFPEMDGHPDLTPQDVLKRHRYR
LHAERMLDVASDTVLEEWTR*
back to top

mRNA from alignment at P-wetherbeei_contig56347:3..365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56347.1.1 ID=mRNA_P-wetherbeei_contig56347.1.1|Name=mRNA_P-wetherbeei_contig56347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig56347:3..365+ (Phaeothamnion wetherbeei SAG_119_79)
GTGACCCGCGAGGTCGCTGCGCTGTCGCTCGATCCCAAGCGCATACATGG CCTGCTGTGGAACCCCGGTGGCGCTTCTCTCGACAGGGCCTGGTTACGGC TGGGCTTGAATGCCGACGCCACGATCGCCGTGGTCGGCGGCGCTCAGCTG TTCGGCCTGTTCCTCGATCTCGGCTACGACACGTTCTTCCTCTCGCACTG CCGCTCGGCCGCCGTTCCGGGCGGGCGGTTGGTGTTCCCCGAGATGGATG GGCACCCCGACCTCACGCCGCAGGACGTGTTGAAGCGGCACCGCTATCGC CTGCATGCGGAGCGGATGCTCGATGTCGCGAGCGACACGGTGCTCGAAGA ATGGACTCGCTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56347:3..365+

>mRNA_P-wetherbeei_contig56347.1.1 ID=mRNA_P-wetherbeei_contig56347.1.1|Name=mRNA_P-wetherbeei_contig56347.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig56347:3..365+ (Phaeothamnion wetherbeei SAG_119_79)
GTGACCCGCGAGGTCGCTGCGCTGTCGCTCGATCCCAAGCGCATACATGG
CCTGCTGTGGAACCCCGGTGGCGCTTCTCTCGACAGGGCCTGGTTACGGC
TGGGCTTGAATGCCGACGCCACGATCGCCGTGGTCGGCGGCGCTCAGCTG
TTCGGCCTGTTCCTCGATCTCGGCTACGACACGTTCTTCCTCTCGCACTG
CCGCTCGGCCGCCGTTCCGGGCGGGCGGTTGGTGTTCCCCGAGATGGATG
GGCACCCCGACCTCACGCCGCAGGACGTGTTGAAGCGGCACCGCTATCGC
CTGCATGCGGAGCGGATGCTCGATGTCGCGAGCGACACGGTGCTCGAAGA
ATGGACTCGCTAA
back to top