mRNA_P-wetherbeei_contig56305.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56305.2.1
Unique NamemRNA_P-wetherbeei_contig56305.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A6M0JU05_9GAMM (Helix-turn-helix domain-containing protein n=1 Tax=Thiorhodococcus minor TaxID=57489 RepID=A0A6M0JU05_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 5.390e-10
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    7 VPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 165
            +P+ ++G +Y    +VA+ V VSRQTLWRWRQD  +P G K+R+  V++T  E
Sbjct:    1 MPLTIKGLTYYTAADVAERVEVSRQTLWRWRQDGKIPLGHKYRNRHVVFTPAE 53
[Close]
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A7C1YJZ2_9GAMM (DNA-binding protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A7C1YJZ2_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 7.110e-10
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    7 VPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 165
            +PI +    YL  T++   VGV+RQTLWRWRQ+  VP G ++R+ QV+++ EE
Sbjct:    5 MPININDVRYLTVTDLLKEVGVTRQTLWRWRQEGKVPTGHRYRNRQVVFSPEE 57
[Close]
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A2T6NIW0_9GAMM (HTH_17 domain-containing protein n=1 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2T6NIW0_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.520e-9
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   13 IELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 165
            IE+ G +YL  +E+   VGV+RQTLWRWRQ+  VP G ++R   V+++ +E
Sbjct:   19 IEINGINYLSASELLKTVGVTRQTLWRWRQEGKVPAGHRYRGRHVVFSPDE 69
[Close]
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A259TU68_9BACT (HTH merR-type domain-containing protein n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TU68_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.330e-9
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    7 VPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 165
            +P  +   ++L  + VADLVG+SRQ+LWRW++  LVP G+++R  ++ YT +E
Sbjct:    1 MPTVVHDTTFLTASMVADLVGISRQSLWRWKKAGLVPAGRRYRGRELFYTRDE 53
[Close]
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A2E6QC02_9PROT (HTH_17 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QC02_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 3.330e-9
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   19 LQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 165
            + G  YL ++EVA+ + +SRQTLWRWRQD  +P G ++R  QV+++  E
Sbjct:    5 IDGAVYLSESEVAERLDISRQTLWRWRQDGKIPQGHRYRGRQVLFSKTE 53
[Close]
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Match: A0A7X4FJ74_9BACT (Helix-turn-helix domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4FJ74_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.480e-8
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    7 VPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVIYTAEE 165
            +PI++   +Y   TEV   + VSRQTLWRWR +  VP G ++R+  V++T++E
Sbjct:    1 MPIQIDNVTYYSATEVIGDLNVSRQTLWRWRNEGKVPAGHRYRNRSVLFTSDE 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56305.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6M0JU05_9GAMM5.390e-1047.17Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A7C1YJZ2_9GAMM7.110e-1047.17DNA-binding protein n=1 Tax=Sedimenticola sp. TaxI... [more]
A0A2T6NIW0_9GAMM2.520e-947.06HTH_17 domain-containing protein n=1 Tax=gamma pro... [more]
A0A259TU68_9BACT3.330e-943.40HTH merR-type domain-containing protein n=1 Tax=Ru... [more]
A0A2E6QC02_9PROT3.330e-946.94HTH_17 domain-containing protein n=1 Tax=Rhodospir... [more]
A0A7X4FJ74_9BACT1.480e-843.40Helix-turn-helix domain-containing protein n=2 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56305contigP-wetherbeei_contig56305:353..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186837.7177148-CDS-P-wetherbeei_contig56305:352..5171683186837.7177148-CDS-P-wetherbeei_contig56305:352..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56305 353..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56305.2.1prot_P-wetherbeei_contig56305.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56305 353..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56305.2.1

>prot_P-wetherbeei_contig56305.2.1 ID=prot_P-wetherbeei_contig56305.2.1|Name=mRNA_P-wetherbeei_contig56305.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
RDVPIELQGESYLRQTEVADLVGVSRQTLWRWRQDRLVPPGKKFRDTQVI
YTAEE
back to top

mRNA from alignment at P-wetherbeei_contig56305:353..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56305.2.1 ID=mRNA_P-wetherbeei_contig56305.2.1|Name=mRNA_P-wetherbeei_contig56305.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig56305:353..517+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGACGTGCCGATTGAATTACAAGGTGAGAGTTACCTCCGGCAAACGGA
GGTTGCAGATTTGGTTGGAGTCTCAAGGCAAACGCTTTGGCGTTGGCGGC
AAGACCGCTTGGTCCCGCCCGGCAAGAAATTTCGGGATACACAAGTCATT
TACACGGCAGAAGAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56305:353..517+

>mRNA_P-wetherbeei_contig56305.2.1 ID=mRNA_P-wetherbeei_contig56305.2.1|Name=mRNA_P-wetherbeei_contig56305.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig56305:353..517+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGACGTGCCGATTGAATTACAAGGTGAGAGTTACCTCCGGCAAACGGA
GGTTGCAGATTTGGTTGGAGTCTCAAGGCAAACGCTTTGGCGTTGGCGGC
AAGACCGCTTGGTCCCGCCCGGCAAGAAATTTCGGGATACACAAGTCATT
TACACGGCAGAAGAA
back to top