mRNA_P-wetherbeei_contig56285.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56285.1.1
Unique NamemRNA_P-wetherbeei_contig56285.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: A0A127EZE7_9HYPH (Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EZE7_9HYPH)

HSP 1 Score: 319 bits (818), Expect = 4.850e-108
Identity = 164/172 (95.35%), Postives = 168/172 (97.67%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVLGPRFKAA 516
            RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKD+ERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIG+PAGEPYPPYAPL+ DE  ALAATLK+TVL PRFKAA
Sbjct:  130 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDYERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGVPAGEPYPPYAPLTHDEMTALAATLKSTVLAPRFKAA 301
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: A0A6L5FHI3_9HYPH (Dihydrodipicolinate synthase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FHI3_9HYPH)

HSP 1 Score: 289 bits (740), Expect = 3.590e-96
Identity = 146/169 (86.39%), Postives = 157/169 (92.90%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVLGPRF 507
            RET+LPITLYLNPGPGADVS+ DTIAL +LP VQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLA+L LGGSGATMPPPGSEIAR VI+AF+AKD++RAAE+QLQFALFPSKWMHRGLAPAMKAAMNLIG+P G+PYPPY PLSRDET ALAA LK TVL  RF
Sbjct:  130 RETRLPITLYLNPGPGADVSVSDTIALGQLPCVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLASLMLGGSGATMPPPGSEIARHVINAFLAKDYQRAAEVQLQFALFPSKWMHRGLAPAMKAAMNLIGVPVGDPYPPYVPLSRDETVALAAVLKTTVLAHRF 298
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: A0A537VAU3_9PROT (Dihydrodipicolinate synthase family protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537VAU3_9PROT)

HSP 1 Score: 276 bits (707), Expect = 2.120e-92
Identity = 142/169 (84.02%), Postives = 150/169 (88.76%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVLGPRF 507
            RE+KLPITLYLNPGPGADVSI DTIALAKLP V+LIKESSRDLARVSRLIVEIDRAGHARY TTMQMLLATL+LGGSGATMPPP  EIAR +IDAFVAKD ERAA +Q QFALFPSKWMHRGLAP MKAAMNLIG+P G+PYPPYA LS DE AALAA L+ T L  RF
Sbjct:   44 RESKLPITLYLNPGPGADVSIADTIALAKLPSVELIKESSRDLARVSRLIVEIDRAGHARYCTTMQMLLATLELGGSGATMPPPACEIARHIIDAFVAKDHERAAALQQQFALFPSKWMHRGLAPVMKAAMNLIGVPVGDPYPPYASLSNDEIAALAAVLRTTALAKRF 212
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: A0A537NR32_9PROT (Dihydrodipicolinate synthase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NR32_9PROT)

HSP 1 Score: 264 bits (675), Expect = 2.650e-86
Identity = 137/168 (81.55%), Postives = 146/168 (86.90%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVLGPR 504
            RET LPITLYLNPGPGADVS+ DTIALAKL  VQ IKESSRDLARVSRLI EIDRAGHARYFTTMQMLL TL LGGSGATMPPP  EIAR +IDAFVAK++ERAAEIQLQFALFP+KWMHRGLAP MKAAMN IG+P G+PYPP+A L+ DE  ALAA LK TVL  R
Sbjct:  130 RETALPITLYLNPGPGADVSVADTIALAKLRCVQFIKESSRDLARVSRLIAEIDRAGHARYFTTMQMLLITLLLGGSGATMPPPACEIARHIIDAFVAKEYERAAEIQLQFALFPAKWMHRGLAPVMKAAMNQIGVPVGDPYPPFARLTPDEAQALAAYLKTTVLAQR 297
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: A0A3N5NG10_9PROT (Dihydrodipicolinate synthase family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NG10_9PROT)

HSP 1 Score: 246 bits (628), Expect = 3.040e-79
Identity = 126/169 (74.56%), Postives = 138/169 (81.66%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVLGPRF 507
            +E  LPITLYLNPGPGADVS+P TIA++K+ QV+ IKESSRDL RV RLI EIDRAGHARYFTT+QMLLATL+LGGSGATMPPPGSEIAR VIDAFVA D+ RA E+Q QFALFP+KWMHRGL P MK AMNLIGIP G  YPPY  L  DET AL   L+ TVL  R 
Sbjct:  130 KEVSLPITLYLNPGPGADVSVPATIAISKIDQVKYIKESSRDLNRVGRLIFEIDRAGHARYFTTVQMLLATLELGGSGATMPPPGSEIARHVIDAFVAGDYGRAMEVQRQFALFPAKWMHRGLTPTMKTAMNLIGIPVGGMYPPYLSLDEDETQALRDYLRTTVLSKRI 298
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: UPI001918C0EA (dihydrodipicolinate synthase family protein n=1 Tax=Ramlibacter sp. AW1 TaxID=2801330 RepID=UPI001918C0EA)

HSP 1 Score: 221 bits (562), Expect = 3.400e-69
Identity = 106/163 (65.03%), Postives = 133/163 (81.60%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKAT 489
            RET+LP+ LYLNPGPGA+VS+  TI L+KLPQVQ +KESSRDL+RV +LIVE+++AGHARY+TTMQMLL TL LGGSGATMPPPG+ +A  ++ AF+A  +E AA +QLQF LFP+KWMHRGL P +KAAM ++G P G+P+PP+  L+ DE AAL A L  T
Sbjct:  130 RETRLPMLLYLNPGPGANVSVAATIELSKLPQVQYVKESSRDLSRVGQLIVEVEKAGHARYYTTMQMLLITLMLGGSGATMPPPGAALANRIVKAFLAGQYEEAARLQLQFGLFPAKWMHRGLTPTLKAAMEILGHPVGKPFPPFNELTADEKAALQAYLSQT 292
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: A0A6N7FG05_9PROT (Dihydrodipicolinate synthase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FG05_9PROT)

HSP 1 Score: 219 bits (559), Expect = 1.120e-68
Identity = 111/163 (68.10%), Postives = 136/163 (83.44%), Query Frame = 1 
Query:    7 TKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVL 495
            TKLPI LYLNPGPG +V+   T+ALAKLPQV  +KESSRDLARVSRLIVEID AGHARYFTTMQMLLA++QLGGSGATMPPP + IA A+IDAF A D  RAAE+Q QFA++P++WM  GLAPA+KAAM ++G+P G+PYPP+ P++ ++ AA+ A L+ T L
Sbjct:  132 TKLPIMLYLNPGPGMEVNPAWTLALAKLPQVAYVKESSRDLARVSRLIVEIDLAGHARYFTTMQMLLASIQLGGSGATMPPPAAYIANAIIDAFKAGDHLRAAELQRQFAVWPARWMGYGLAPALKAAMAIVGLPLGDPYPPFKPVAGEDLAAMEAYLRTTYL 294
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: UPI00191A9F5E (dihydrodipicolinate synthase family protein n=1 Tax=Ramlibacter sp. AW1 TaxID=2801330 RepID=UPI00191A9F5E)

HSP 1 Score: 217 bits (553), Expect = 7.580e-68
Identity = 108/165 (65.45%), Postives = 132/165 (80.00%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVL 495
            RET LP+ LYLNPGPGA+VSI DTIALAKL +V+ +KESSRDL+RVSRLI EI+  GHA+YFTTMQMLL TL+LGGSG T+PPP + +A  VI AFVA D + AA +QLQFALFP++WMH GL P +KAA+ ++GI AG+PYPPY P+S  +  AL A +K T L
Sbjct:  134 RETDLPVILYLNPGPGANVSIADTIALAKLERVKYVKESSRDLSRVSRLIAEIELEGHAKYFTTMQMLLITLELGGSGITLPPPAAMLANKVIQAFVAGDMKEAARLQLQFALFPARWMHHGLTPTLKAALKILGISAGDPYPPYPPISGKDLQALEAYIKRTDL 298
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: UPI001BD078B1 (dihydrodipicolinate synthase family protein n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BD078B1)

HSP 1 Score: 216 bits (551), Expect = 2.050e-67
Identity = 116/165 (70.30%), Postives = 129/165 (78.18%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVL 495
            RET LPI LYLN GPGAD+SI  TI LAKL  +  IKESSRDLARVSRLIVEID AG+A+YFTTMQMLL TLQLGGSG T+PPP +E+AR VI+A+ A D ERA ++QLQFA FP KWM  GLA  MKAA N IGIPAGEPYPPYAP+S D  A+L   L  T L
Sbjct:  140 RETSLPIILYLNAGPGADLSIDATIELAKLDFIHGIKESSRDLARVSRLIVEIDHAGYAQYFTTMQMLLITLQLGGSGITLPPPAAELARHVINAYEAGDLERATQLQLQFATFPGKWMPFGLAAVMKAASNFIGIPAGEPYPPYAPVSGDALASLHRFLSTTDL 304
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BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Match: UPI001BD27ECA (dihydrodipicolinate synthase family protein n=1 Tax=Bradyrhizobium sp. dw_78 TaxID=2719793 RepID=UPI001BD27ECA)

HSP 1 Score: 212 bits (540), Expect = 5.860e-66
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = 1 
Query:    1 RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLIVEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKDFERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSRDETAALAATLKATVLGPR 504
            RE+ LP+ LYLN GPGADVS+P TI LAKL QV+ +KESSRD+ RVSRLIVEI+ AGHARYFTT+Q+LL  LQLGGSG T+PPP +EIAR  IDAF A D  RA  +Q QFALFP++WM  GLA  MKAA   IGI AG+PYPPYAP+  D+  AL A L  TVL  R
Sbjct:  129 RESNLPLMLYLNAGPGADVSVPATIELAKLDQVKYVKESSRDVTRVSRLIVEIEHAGHARYFTTLQLLLIALQLGGSGITLPPPAAEIARLAIDAFEAGDVARAVVLQKQFALFPARWMPYGLAAVMKAASAYIGIQAGQPYPPYAPVKGDDLNALHAYLATTVLSQR 296
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56285.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EZE7_9HYPH4.850e-10895.35Dihydrodipicolinate synthase/N-acetylneuraminate l... [more]
A0A6L5FHI3_9HYPH3.590e-9686.39Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A537VAU3_9PROT2.120e-9284.02Dihydrodipicolinate synthase family protein (Fragm... [more]
A0A537NR32_9PROT2.650e-8681.55Dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A3N5NG10_9PROT3.040e-7974.56Dihydrodipicolinate synthase family protein n=1 Ta... [more]
UPI001918C0EA3.400e-6965.03dihydrodipicolinate synthase family protein n=1 Ta... [more]
A0A6N7FG05_9PROT1.120e-6868.10Dihydrodipicolinate synthase family protein n=1 Ta... [more]
UPI00191A9F5E7.580e-6865.45dihydrodipicolinate synthase family protein n=1 Ta... [more]
UPI001BD078B12.050e-6770.30dihydrodipicolinate synthase family protein n=1 Ta... [more]
UPI001BD27ECA5.860e-6666.07dihydrodipicolinate synthase family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56285contigP-wetherbeei_contig56285:3..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog266265.Bxe_B2813
PFAMsDHDPS
Model size516
Max annot lvl1224|Proteobacteria
KEGG rclassRC03062,RC03063
KEGG koko:K01714
KEGG ReactionR10147
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.07e-61
EggNOG OGsCOG0329@1|root,COG0329@2|Bacteria,1NQJ0@1224|Proteobacteria
EC4.3.3.7
DescriptionEvidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology
Cds size516
COG categoryEM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186837.1582477-CDS-P-wetherbeei_contig56285:2..5181683186837.1582477-CDS-P-wetherbeei_contig56285:2..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56285 3..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56285.1.1prot_P-wetherbeei_contig56285.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56285 3..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56285.1.1

>prot_P-wetherbeei_contig56285.1.1 ID=prot_P-wetherbeei_contig56285.1.1|Name=mRNA_P-wetherbeei_contig56285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
RETKLPITLYLNPGPGADVSIPDTIALAKLPQVQLIKESSRDLARVSRLI
VEIDRAGHARYFTTMQMLLATLQLGGSGATMPPPGSEIARAVIDAFVAKD
FERAAEIQLQFALFPSKWMHRGLAPAMKAAMNLIGIPAGEPYPPYAPLSR
DETAALAATLKATVLGPRFKAA
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mRNA from alignment at P-wetherbeei_contig56285:3..518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56285.1.1 ID=mRNA_P-wetherbeei_contig56285.1.1|Name=mRNA_P-wetherbeei_contig56285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig56285:3..518- (Phaeothamnion wetherbeei SAG_119_79)
CGCGAGACAAAGCTGCCGATCACGCTCTATCTCAATCCCGGCCCCGGCGC
GGACGTCTCGATTCCCGACACCATCGCCCTCGCGAAGCTGCCGCAGGTGC
AACTCATCAAGGAAAGCTCCCGCGATCTCGCCCGCGTGTCCCGGCTGATC
GTGGAGATCGACCGCGCCGGACATGCCCGCTATTTCACGACCATGCAGAT
GCTGCTCGCGACGCTTCAACTCGGCGGCTCGGGCGCGACCATGCCGCCGC
CCGGCTCCGAGATCGCTCGCGCGGTCATCGACGCGTTCGTTGCGAAGGAC
TTCGAGCGCGCAGCTGAAATACAACTGCAGTTCGCGCTGTTCCCTTCGAA
GTGGATGCACCGGGGGCTGGCGCCGGCCATGAAGGCCGCCATGAACCTGA
TCGGCATTCCGGCCGGCGAACCGTATCCGCCCTACGCACCGCTCAGCCGC
GACGAAACGGCTGCGCTCGCCGCCACGTTGAAGGCCACCGTCCTCGGCCC
GCGCTTCAAGGCCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56285:3..518-

>mRNA_P-wetherbeei_contig56285.1.1 ID=mRNA_P-wetherbeei_contig56285.1.1|Name=mRNA_P-wetherbeei_contig56285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig56285:3..518- (Phaeothamnion wetherbeei SAG_119_79)
CGCGAGACAAAGCTGCCGATCACGCTCTATCTCAATCCCGGCCCCGGCGC
GGACGTCTCGATTCCCGACACCATCGCCCTCGCGAAGCTGCCGCAGGTGC
AACTCATCAAGGAAAGCTCCCGCGATCTCGCCCGCGTGTCCCGGCTGATC
GTGGAGATCGACCGCGCCGGACATGCCCGCTATTTCACGACCATGCAGAT
GCTGCTCGCGACGCTTCAACTCGGCGGCTCGGGCGCGACCATGCCGCCGC
CCGGCTCCGAGATCGCTCGCGCGGTCATCGACGCGTTCGTTGCGAAGGAC
TTCGAGCGCGCAGCTGAAATACAACTGCAGTTCGCGCTGTTCCCTTCGAA
GTGGATGCACCGGGGGCTGGCGCCGGCCATGAAGGCCGCCATGAACCTGA
TCGGCATTCCGGCCGGCGAACCGTATCCGCCCTACGCACCGCTCAGCCGC
GACGAAACGGCTGCGCTCGCCGCCACGTTGAAGGCCACCGTCCTCGGCCC
GCGCTTCAAGGCCGCG
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