mRNA_P-wetherbeei_contig56284.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56284.1.1
Unique NamemRNA_P-wetherbeei_contig56284.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: Q391E9_BURL3 (HTH-type transcriptional regulator CynR n=250 Tax=Proteobacteria TaxID=1224 RepID=Q391E9_BURL3)

HSP 1 Score: 166 bits (421), Expect = 2.250e-48
Identity = 87/143 (60.84%), Postives = 108/143 (75.52%), Query Frame = 1
Query:    1 QHAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            QH EL ++ LT+D +VLVCR DHPLA+R R+ W  L   PLIFAG  S NR LLD AL  +   LH FYEVQRSSTALGL A G+GAAVVP+LAIQ   YPM++ + LV+P V+R+L LV R++AQLSPAA AL+DM++E A+
Sbjct:  153 QHPELVNVPLTSDPYVLVCRDDHPLAKRRRIRWAALQPHPLIFAGEVSGNRGLLDGALKTSGVSLHSFYEVQRSSTALGLVAEGLGAAVVPKLAIQKNAYPMIRTIELVEPAVSRTLVLVTRKSAQLSPAARALYDMIVEQAT 295          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: A0A0F0DFD2_9BURK (LysR family transcriptional regulator n=9 Tax=Burkholderiaceae TaxID=119060 RepID=A0A0F0DFD2_9BURK)

HSP 1 Score: 166 bits (420), Expect = 3.350e-48
Identity = 89/143 (62.24%), Postives = 108/143 (75.52%), Query Frame = 1
Query:    1 QHAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            QH EL  L LT+D +VLVCR DHPLA+R R+ W+ L   PLIFAG +S NR LLD AL  +   LH FYEVQRSSTALGL A G+GAAVVPRLAIQ   YPM++ V LV+P V+R+L LV R++AQLSPAA AL+D ++E A+
Sbjct:  153 QHPELVSLPLTSDPYVLVCRDDHPLAKRRRIRWQALQPYPLIFAGEASGNRSLLDGALKASGVTLHSFYEVQRSSTALGLVAQGLGAAVVPRLAIQKNAYPMIRTVELVEPEVSRTLVLVTRKSAQLSPAARALYDRIVEGAT 295          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: D8IVG9_HERSS (Transcription regulator, LysR family protein n=8 Tax=Herbaspirillum TaxID=963 RepID=D8IVG9_HERSS)

HSP 1 Score: 161 bits (408), Expect = 2.080e-46
Identity = 87/139 (62.59%), Postives = 102/139 (73.38%), Query Frame = 1
Query:    4 HAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLE 420
            H EL  +ALT D +VL+C  DHPLARR R+AWR+L   PLIFAG  SSNR LLD  L      L  FYEVQRSSTA+GL A GVG AVVP+LAIQ G YP ++V+ LVDPVV+RSL L+ R+ A LSPAA AL+DM+ E
Sbjct:  154 HPELISVALTEDRYVLICPKDHPLARRRRIAWRQLQSYPLIFAGEVSSNRALLDPTLKANGFALRSFYEVQRSSTAVGLVAQGVGVAVVPKLAIQEGAYPTVRVIELVDPVVSRSLVLITRKAAHLSPAAQALYDMIRE 292          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: UPI00141FD565 (LysR family transcriptional regulator n=4 Tax=Burkholderia TaxID=32008 RepID=UPI00141FD565)

HSP 1 Score: 160 bits (405), Expect = 5.860e-46
Identity = 87/142 (61.27%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    4 HAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            H +L  + LT D +VL+C  DH LARR R+AW++L   PLIFAG  S NRPLLD AL  A   L  FYEVQRSSTA+GL A GVGAAVVPRLAIQ G YP ++ + LVDP V+R+L LV RR A LSPAA AL+DM+ E A+
Sbjct:  154 HPDLLSVPLTEDRYVLICHEDHALARRRRIAWKQLHAYPLIFAGEFSGNRPLLDLALGSAQFALQSFYEVQRSSTAVGLVAQGVGAAVVPRLAIQKGAYPGVRTIELVDPPVSRTLVLVARRTAHLSPAAQALYDMIREQAT 295          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: UPI000489A8FE (LysR family transcriptional regulator n=1 Tax=Paraburkholderia oxyphila TaxID=614212 RepID=UPI000489A8FE)

HSP 1 Score: 160 bits (405), Expect = 6.020e-46
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    1 QHAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            QH +L    + TD +VL+CR DHPLA+R R+ W  L   PLIFAG  S NR LLD AL  +   LH FYEVQRSSTALGL A G+GAAVVPRLAIQ   YPM++ + LV+P V+R+L L+ RR AQLSPAA AL+DM++E A+
Sbjct:  153 QHPDLQSRPIATDPYVLICRDDHPLAKRRRVRWEALRSYPLIFAGEVSGNRGLLDGALKTSGVALHSFYEVQRSSTALGLVAEGLGAAVVPRLAIQKNAYPMVRSIELVEPSVSRTLLLLTRRTAQLSPAARALYDMIIELAA 295          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: R4X2I7_9BURK (Transcriptional regulator LysR family n=3 Tax=Caballeronia TaxID=1827195 RepID=R4X2I7_9BURK)

HSP 1 Score: 159 bits (403), Expect = 1.440e-45
Identity = 85/142 (59.86%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    4 HAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            H EL    L  DS+VLVC  DHPLARR R+AWR L+  PLI AG  S NR L+D AL  +  +LH FYEVQRSSTALGL A GVGAAVVP LAIQ   YP ++ + L++P +TR+L LV RR A LSPAA AL+DM+L  A+
Sbjct:  154 HPELQTAPLVEDSYVLVCHRDHPLARRRRIAWRALSDYPLILAGDVSGNRSLIDAALEGSGIELHSFYEVQRSSTALGLVAQGVGAAVVPGLAIQKDAYPSVRAIELIEPAITRALVLVTRRTASLSPAAQALYDMLLGQAA 295          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: A0A346BKR9_9BURK (HTH-type transcriptional regulator CynR n=74 Tax=Burkholderiaceae TaxID=119060 RepID=A0A346BKR9_9BURK)

HSP 1 Score: 159 bits (402), Expect = 1.700e-45
Identity = 86/142 (60.56%), Postives = 102/142 (71.83%), Query Frame = 1
Query:    4 HAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            H +L  + LT D +VL+C  DHPLA+R R+AWR+L   PLIFAG  S NR LLD AL      L  FYEVQRSSTA+GL A GVGAAVVP LAIQ G YP ++ V L  PVV+R+L LV R+ AQLSPAA AL+DM+LE A+
Sbjct:  154 HPDLASVPLTEDRYVLICHEDHPLAKRRRIAWRQLQSYPLIFAGEVSGNRALLDVALEKNELALRSFYEVQRSSTAVGLVAQGVGAAVVPALAIQKGAYPTVRTVELTHPVVSRTLVLVARKTAQLSPAAQALYDMILEQAT 295          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: UPI001E2B5C5C (LysR substrate-binding domain-containing protein n=1 Tax=Paraburkholderia sp. MMS20-SJTR3 TaxID=2886946 RepID=UPI001E2B5C5C)

HSP 1 Score: 158 bits (400), Expect = 3.480e-45
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    4 HAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            H EL  + LT D +VL+C   HPLARR R+AWR+L   PLIFAG  S NR LLD ALA +   L  FYEVQRSSTALGL A GVGAAVVP LA+Q+G YP ++ + L  P V+R+L LV R++AQLSPAA AL+DM+ E A+
Sbjct:  154 HPELATVPLTEDRYVLICHDAHPLARRRRIAWRQLQAYPLIFAGEISGNRALLDMALASSEIALRSFYEVQRSSTALGLVAQGVGAAVVPALAVQNGAYPNVRAIELTQPSVSRTLVLVARKSAQLSPAAQALYDMIREQAT 295          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: A0A7W5IM48_9BURK (DNA-binding transcriptional LysR family regulator n=6 Tax=Burkholderiaceae TaxID=119060 RepID=A0A7W5IM48_9BURK)

HSP 1 Score: 158 bits (399), Expect = 4.550e-45
Identity = 84/143 (58.74%), Postives = 105/143 (73.43%), Query Frame = 1
Query:    1 QHAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            QH EL  + LTTD +VLVCR DHPLA+R R+ W  L    LIFAG  S+NR LLD AL     +L  FYEVQRSSTALGL A G+GAAVVPRLA+Q   +PM++V+ L++P V+R+L L+ R+ A LSPAA AL+DM+L+ AS
Sbjct:  153 QHPELTSVPLTTDPYVLVCRDDHPLAKRRRVKWSALGAHALIFAGEVSANRGLLDVALETNGVNLRAFYEVQRSSTALGLVAQGLGAAVVPRLAVQKDVFPMVRVIELIEPDVSRTLVLLARKAAHLSPAAQALYDMLLDQAS 295          
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Match: UPI0018EBD7CA (LysR family transcriptional regulator n=1 Tax=Herbaspirillum sp. ASV7 TaxID=2795117 RepID=UPI0018EBD7CA)

HSP 1 Score: 158 bits (399), Expect = 4.670e-45
Identity = 84/142 (59.15%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    4 HAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSNRPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTYPMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPAS 429
            H +L  L LT D +VL+C  +HPLARR R+AW +L   PLIFAG  S+NR LLD AL      L  FYEVQRSSTA+GL A GVG AVVPRLA+Q G YP ++V+ LVDPVV+R+L L++RR A LSPAA AL+DM+ +  S
Sbjct:  154 HPDLISLPLTEDRYVLICHKEHPLARRRRIAWPQLQSYPLIFAGEVSANRALLDPALESHGLALRSFYEVQRSSTAVGLVAQGVGVAVVPRLALQEGAYPNVRVIELVDPVVSRNLVLIKRRTAHLSPAAQALYDMIRDQES 295          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q391E9_BURL32.250e-4860.84HTH-type transcriptional regulator CynR n=250 Tax=... [more]
A0A0F0DFD2_9BURK3.350e-4862.24LysR family transcriptional regulator n=9 Tax=Burk... [more]
D8IVG9_HERSS2.080e-4662.59Transcription regulator, LysR family protein n=8 T... [more]
UPI00141FD5655.860e-4661.27LysR family transcriptional regulator n=4 Tax=Burk... [more]
UPI000489A8FE6.020e-4659.44LysR family transcriptional regulator n=1 Tax=Para... [more]
R4X2I7_9BURK1.440e-4559.86Transcriptional regulator LysR family n=3 Tax=Caba... [more]
A0A346BKR9_9BURK1.700e-4560.56HTH-type transcriptional regulator CynR n=74 Tax=B... [more]
UPI001E2B5C5C3.480e-4559.86LysR substrate-binding domain-containing protein n... [more]
A0A7W5IM48_9BURK4.550e-4558.74DNA-binding transcriptional LysR family regulator ... [more]
UPI0018EBD7CA4.670e-4559.15LysR family transcriptional regulator n=1 Tax=Herb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56284contigP-wetherbeei_contig56284:66..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog216591.BCAM0404
PFAMsHTH_1,LysR_substrate
Model size450
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.2e-48
EggNOG OGsCOG0583@1|root,COG0583@2|Bacteria,1MUWX@1224|Proteobacteria,2VKDH@28216|Betaproteobacteria,1K2C5@119060|Burkholderiaceae
DescriptionTranscriptional regulator
Cds size450
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186837.1123385-CDS-P-wetherbeei_contig56284:65..5151683186837.1123385-CDS-P-wetherbeei_contig56284:65..515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56284 66..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56284.1.1prot_P-wetherbeei_contig56284.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56284 66..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56284.1.1

>prot_P-wetherbeei_contig56284.1.1 ID=prot_P-wetherbeei_contig56284.1.1|Name=mRNA_P-wetherbeei_contig56284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
QHAELDHLALTTDSFVLVCRIDHPLARRSRLAWRELAGEPLIFAGISSSN
RPLLDQALAPAVPDLHPFYEVQRSSTALGLAAAGVGAAVVPRLAIQSGTY
PMLKVVRLVDPVVTRSLALVRRRNAQLSPAALALFDMMLEPASAPARRR*
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mRNA from alignment at P-wetherbeei_contig56284:66..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56284.1.1 ID=mRNA_P-wetherbeei_contig56284.1.1|Name=mRNA_P-wetherbeei_contig56284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig56284:66..515- (Phaeothamnion wetherbeei SAG_119_79)
CAGCACGCCGAACTGGACCACCTGGCATTGACCACCGACAGCTTCGTACT GGTCTGTCGCATCGACCATCCGCTGGCGCGGCGCTCCCGTCTGGCATGGC GGGAGCTCGCCGGTGAACCGCTGATCTTTGCCGGCATCAGCAGCAGCAAC CGTCCCCTGCTGGACCAGGCACTGGCGCCCGCGGTACCGGACCTGCATCC TTTCTATGAGGTGCAGCGCAGCTCGACCGCGCTCGGCCTGGCGGCGGCGG GCGTCGGCGCGGCAGTGGTGCCGCGCCTGGCAATCCAGAGCGGCACCTAT CCCATGCTCAAGGTGGTGCGCCTGGTAGACCCGGTGGTCACACGCAGCCT GGCGCTGGTGCGGCGGCGCAATGCCCAGCTCTCGCCGGCGGCACTGGCGC TGTTCGACATGATGCTGGAGCCGGCGAGCGCGCCCGCGCGCCGACGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56284:66..515-

>mRNA_P-wetherbeei_contig56284.1.1 ID=mRNA_P-wetherbeei_contig56284.1.1|Name=mRNA_P-wetherbeei_contig56284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig56284:66..515- (Phaeothamnion wetherbeei SAG_119_79)
CAGCACGCCGAACTGGACCACCTGGCATTGACCACCGACAGCTTCGTACT
GGTCTGTCGCATCGACCATCCGCTGGCGCGGCGCTCCCGTCTGGCATGGC
GGGAGCTCGCCGGTGAACCGCTGATCTTTGCCGGCATCAGCAGCAGCAAC
CGTCCCCTGCTGGACCAGGCACTGGCGCCCGCGGTACCGGACCTGCATCC
TTTCTATGAGGTGCAGCGCAGCTCGACCGCGCTCGGCCTGGCGGCGGCGG
GCGTCGGCGCGGCAGTGGTGCCGCGCCTGGCAATCCAGAGCGGCACCTAT
CCCATGCTCAAGGTGGTGCGCCTGGTAGACCCGGTGGTCACACGCAGCCT
GGCGCTGGTGCGGCGGCGCAATGCCCAGCTCTCGCCGGCGGCACTGGCGC
TGTTCGACATGATGCTGGAGCCGGCGAGCGCGCCCGCGCGCCGACGCTAG
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