mRNA_P-wetherbeei_contig5625.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5625.1.1
Unique NamemRNA_P-wetherbeei_contig5625.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A6V1PIG5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PIG5_HETAK)

HSP 1 Score: 115 bits (288), Expect = 8.310e-28
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 3
Query:  273 IVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFL 482
            + R+ PGYADMHVALAAHAW  RD  TAE+EW  TC+ IDVGCRKYKD  WVS VRRWPPSL  +L  FL
Sbjct:  134 VTRKNPGYADMHVALAAHAWSVRDPETAEREWAFTCNAIDVGCRKYKDLEWVSVVRRWPPSLVEELQRFL 203          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A835YV52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV52_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.460e-25
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  270 DIVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFLNRR 491
             ++RR PGYAD+HVA+AA AWG RD  TAE+EW   C   DVGC KYK   WV+ +RRWPPSL+ QL NFL +R
Sbjct:  281 SVLRRQPGYADLHVAIAADAWGRRDAETAEREWAFACQNTDVGCAKYKSMEWVTGIRRWPPSLSAQLGNFLEKR 354          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A7S0NF04_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF04_9CRYP)

HSP 1 Score: 103 bits (256), Expect = 5.960e-23
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  270 DIVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFLNRR 491
            DIVRR PGY DMHVALAA AW   D  TAE EW+  C++I  GC  Y+D +W+STVRRWPPS+   +  FL ++
Sbjct:  165 DIVRRNPGYTDMHVALAAIAWSAGDRETAESEWEFACNKIQTGCSLYRDMDWLSTVRRWPPSMVANMKQFLGKK 238          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A0G4ECF0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ECF0_VITBC)

HSP 1 Score: 104 bits (260), Expect = 1.920e-22
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 3
Query:  270 DIVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFLN 485
             IVRR P Y DMHVALAAHA+ E D+P A +EWQ  C RI+ GCR+Y   +WVS +RRWPPSL  +L +F+N
Sbjct:  301 QIVRRQPAYTDMHVALAAHAYSENDLPGALKEWQFACTRIESGCRRYTQLDWVSEIRRWPPSLVSELRSFIN 372          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A4D9DA78_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA78_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.060e-20
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  270 DIVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFL 482
            D++RR PG+ D+HVALAAHAWGE ++  AE+EW+  C++   GC  Y+D ++V  +RRWPPSL ++L+ FL
Sbjct:  237 DVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFL 307          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: W7UAX4_9STRA (Tpr-repeat protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAX4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.350e-20
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  270 DIVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFL 482
            D++RR PG+ D+HVALAAHAWGE ++  AE+EW+  C++   GC  Y+D ++V  +RRWPPSL ++L+ FL
Sbjct:  340 DVLRRQPGFVDVHVALAAHAWGEGNLGRAEKEWRFACEQTTTGCASYRDLDFVQRIRRWPPSLVKKLEGFL 410          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A0D2J898_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2J898_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 1.490e-18
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  273 IVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFLN 485
            I RR PG ADM VALAA  W       AE++WQ  CDRI VGCRKY D++W+S VRRWPPS+   L +FL+
Sbjct:  279 IARRAPGSADMRVALAALLWQRGLDADAEEQWQYACDRITVGCRKYTDADWLSRVRRWPPSMVAALSDFLS 349          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A7S1N6Y8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N6Y8_9EUGL)

HSP 1 Score: 92.4 bits (228), Expect = 1.650e-18
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  270 DIVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNF 479
             IV+RVPG+ DMHVALA  A+ + D+ TAE EW + C+RI  GC KY+D +WV  +RRWPPSL   ++ +
Sbjct:  206 SIVKRVPGFTDMHVALAMIAYHKGDLATAETEWDIACNRISSGCSKYRDIDWVRRIRRWPPSLVAIMEQY 275          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A2V0PLF6_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PLF6_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 2.490e-18
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  273 IVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFL 482
            I RR PG ADM VALAA  W       AE++WQ  CD I VGCRKY+D +W+S +RRWPPS+   L +FL
Sbjct:  292 IARRAPGSADMRVALAALLWRRGQEAAAEEQWQFACDNITVGCRKYQDRDWLSRIRRWPPSMCAALSDFL 361          
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Match: A0A813HZU1_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HZU1_POLGL)

HSP 1 Score: 88.2 bits (217), Expect = 2.220e-17
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  273 IVRRVPGYADMHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPPSLARQLDNFLNRRIE 497
            +VR+ PG  DMHVALAA  W +  I  AE EW   C++I  GC  YKD  WV+ +RRWP SLA+ L +FL   ++
Sbjct:   73 VVRKDPGLTDMHVALAAVYWEDGKIDLAETEWAFACEKITSGCAAYKDLEWVTEIRRWPLSLAKNLQSFLGEGLQ 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5625.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1PIG5_HETAK8.310e-2870.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YV52_9STRA3.460e-2560.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0NF04_9CRYP5.960e-2356.76Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A0G4ECF0_VITBC1.920e-2259.72Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A4D9DA78_9STRA1.060e-2052.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UAX4_9STRA3.350e-2052.11Tpr-repeat protein n=2 Tax=Nannochloropsis gaditan... [more]
A0A0D2J898_9CHLO1.490e-1857.75Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A7S1N6Y8_9EUGL1.650e-1852.86Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2V0PLF6_9CHLO2.490e-1855.71Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A813HZU1_POLGL2.220e-1749.33Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5625contigP-wetherbeei_contig5625:2..1024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog55529.EKX51039
PFAMsTPR_1,TPR_16
Model size773
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.19e-16
EggNOG OGsCOG0457@1|root,2S722@2759|Eukaryota
Descriptionpeptidyl-tyrosine sulfation
Cds size198
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.9032302-UTR-P-wetherbeei_contig5625:1..3031683186836.9032302-UTR-P-wetherbeei_contig5625:1..303Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5625 2..303 +
1683186836.9306784-UTR-P-wetherbeei_contig5625:751..10241683186836.9306784-UTR-P-wetherbeei_contig5625:751..1024Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5625 752..1024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.913255-CDS-P-wetherbeei_contig5625:303..4261683186836.913255-CDS-P-wetherbeei_contig5625:303..426Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5625 304..426 +
1683186836.9220252-CDS-P-wetherbeei_contig5625:676..7511683186836.9220252-CDS-P-wetherbeei_contig5625:676..751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5625 677..751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5625.1.1prot_P-wetherbeei_contig5625.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5625 304..751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5625.1.1

>prot_P-wetherbeei_contig5625.1.1 ID=prot_P-wetherbeei_contig5625.1.1|Name=mRNA_P-wetherbeei_contig5625.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MHVALAAHAWGERDIPTAEQEWQLTCDRIDVGCRKYKDSNWVSTVRRWPP
SLARQLDNFLNRRIE*
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mRNA from alignment at P-wetherbeei_contig5625:2..1024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5625.1.1 ID=mRNA_P-wetherbeei_contig5625.1.1|Name=mRNA_P-wetherbeei_contig5625.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1023bp|location=Sequence derived from alignment at P-wetherbeei_contig5625:2..1024+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTGGAAGCAGTGATTCTAGCCTTCACATCTCTGATTGCTTCTCACCAT CGCCGCTTCCCACGTGATCCCAGCCACGCGCTGTTGCCGCTCGCCGCTTC CCACGTGGTCCCGGCCACTTGCTGCCGCCGCTCGCCGCTGCTCTTGCTGC CGCCACCGTTGTCACAATTGCCGCCGCCCGCCGCCACTGCCACCGCCGCC AATTCCACTGCCGCCGCTACTGCTGCCGCCGCTGCTACCCGTCTCCTTCT TTGCCTCATTGCCGTCCCAGACATTGTGCGGCGGGTGCCCGGATACGCTG ACATGCACGTCGCCTTGGCGGCCCACGCCTGGGGCGAGCGGGATATCCCG ACGGCGGAGCAGGAGTGGCAGCTGACGTGCGACCGCATCGACGTCGGATG CCGGAAGTACAAGGACTCCAACTGGGTGCGTTTGTCTGCCTCTTTTCGTT TTCTCCTCTTTTCCCTACGTCTTTGTTTTCTTTTGGGGCACAAGAGGTCT CTTTCACCTTAGTCTCGAGGCCAGCCAGGTGTGCGGCGTAGTGGGCGCTG TGCCAGATTTTCCGACTCTTGGCTTGGCAGTGCGGAGCGATGTTTCGGAC AGATCATGGAAACCGAACCGCCTTCCCCTTCCCTGGCCCTTCTCCCATCC TCGTGGTCACTTTGACTTCCTCCAGGTCTCGACGGTGCGCCGATGGCCGC CGAGCCTGGCGCGGCAGCTCGACAACTTCCTCAACAGACGGATCGAATGA CTGGATTATAAGAACGCAGCAGAGTGGTGTGCCTGCGGCCCAAACCGCCC ATTGCGGCGCTCCTTCGTGGGCGTTGATATCACGGCGCGAGCCGCCGGCC CGAGGCGCCGCTTTCAACGGAGTGATAGTAAGTTAAACGACTGTTTATTG TTTTACATGGTCTGAGGAGAAGGCGAGCTGATAGAGGGACAGCCAGGGGA AAGTGGGAGGAACAAATGAAACCGCATGAGCACAGGCACCGCCTGACGTA ACAAAGATGCGATTCGTTGTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5625:2..1024+

>mRNA_P-wetherbeei_contig5625.1.1 ID=mRNA_P-wetherbeei_contig5625.1.1|Name=mRNA_P-wetherbeei_contig5625.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig5625:2..1024+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGTCGCCTTGGCGGCCCACGCCTGGGGCGAGCGGGATATCCCGAC
GGCGGAGCAGGAGTGGCAGCTGACGTGCGACCGCATCGACGTCGGATGCC
GGAAGTACAAGGACTCCAACTGGGTCTCGACGGTGCGCCGATGGCCGCCG
AGCCTGGCGCGGCAGCTCGACAACTTCCTCAACAGACGGATCGAATGA
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