mRNA_P-wetherbeei_contig5624.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5624.1.1
Unique NamemRNA_P-wetherbeei_contig5624.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5624.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5624contigP-wetherbeei_contig5624:791..3627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2837
Hectar predicted targeting categoryother localisation
Exons1
Cds size2610
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.7836413-UTR-P-wetherbeei_contig5624:790..9281683186836.7836413-UTR-P-wetherbeei_contig5624:790..928Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5624 791..928 -
1683186836.8043063-UTR-P-wetherbeei_contig5624:3538..36271683186836.8043063-UTR-P-wetherbeei_contig5624:3538..3627Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5624 3539..3627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.7953403-CDS-P-wetherbeei_contig5624:928..35381683186836.7953403-CDS-P-wetherbeei_contig5624:928..3538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5624 929..3538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5624.1.1prot_P-wetherbeei_contig5624.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5624 929..3538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5624.1.1

>prot_P-wetherbeei_contig5624.1.1 ID=prot_P-wetherbeei_contig5624.1.1|Name=mRNA_P-wetherbeei_contig5624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=870bp
MPLPPPLPPAAASAAPPMQAASRTKSPPPPTQPLTASAFAVAAAMRPPPL
SLPPDSEGHAAEDLRGGRGGEAGNGGPQGHDENTPPEMATFAGWDSDAVP
APLHEAAPQLRQNGGAAAAAGLSRPPPPASAGRGFRCFAQRTEMPLPSPR
PRLPEPQPRLVGTAAPASGSWSFGTASGAPAASPPGGWRDGAWSGGGGGV
GAAAGTEDPGAVGVEAGCGAVAQGAMASAAAARDRRYGCGGETDETDHDV
IVPPWKRQADGGGGGEDGGGQFGGTFSPLGSATHSVGSFFAGAAPPLWRR
GVRQRAPAAAAAQWESMGQHFSAANDHGGFSWTLESPSRARDGGGGSSSV
GGSGRAGYDGSGRGGTALAYSGLVSDATERDGASATGCRGGGGAGTMAAN
FMPLTAHHFATTHVSDALETLQRRKRRTATGGSDGTVTPPAAGGTAGPGA
AITALLGDGGGVTNGGAGQGPLGWLRSEHQGEGDAYDGFSIGVGPAVAHG
APHGATFADGFGGGGGGGGRGDYGGYAGNGAPNILWDQEAQIAQGSDPNG
SPQPPLPVPGAPVPDQWGAPPAPQGLTMFQRGGDAGLGDAAATAMRGTYR
SGGYGTPRAYAMELGVASGVVGAVAGYNGGYGRKGGAFAAAAPPADTDIA
AAGLGAPWFASVTRGDDHLRGGPRTGIGRFSRAVDPSPLPPLTPPPLPPP
VLAIPPVLSSAPLSPSGGYWQAMPEMAAATTSGPAWLQPGGVALRRNYAL
PPGASATPAPLLAYLGPDSRIGAEALAAAVHGSGGAGSYGAGAGAGSAGG
GVGGGAYGAGGGSGTGRARGGGDRMGGDGAGGVGRVATQVWPQPVSLANR
PTSEEHWDRRLGRRQMEYL*
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mRNA from alignment at P-wetherbeei_contig5624:791..3627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5624.1.1 ID=mRNA_P-wetherbeei_contig5624.1.1|Name=mRNA_P-wetherbeei_contig5624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2837bp|location=Sequence derived from alignment at P-wetherbeei_contig5624:791..3627- (Phaeothamnion wetherbeei SAG_119_79)
TCGCCTTTCTGGGGGCGCTGCTGCCGCCGCACCTAGCGGAGGCGGTTGCG
ACCGGCCGTGCTGATCCACACACCCACGAACTGTACCCGATGCCGCTCCC
GCCGCCCTTGCCGCCGGCGGCGGCATCGGCTGCGCCGCCGATGCAGGCGG
CGTCGCGCACCAAGAGCCCCCCGCCGCCGACGCAGCCGTTGACGGCGTCT
GCTTTTGCTGTCGCCGCTGCGATGCGGCCGCCACCGTTGTCACTGCCGCC
GGACTCTGAAGGGCATGCGGCTGAGGACTTGCGTGGCGGGAGAGGAGGCG
AGGCTGGCAATGGTGGGCCGCAGGGTCACGACGAAAACACTCCTCCCGAA
ATGGCGACATTTGCCGGCTGGGATTCGGACGCCGTTCCGGCGCCACTGCA
CGAGGCGGCACCGCAGCTCCGACAAAACGGAGGCGCGGCTGCTGCTGCGG
GCTTGTCGCGGCCACCGCCGCCGGCTTCTGCGGGGCGAGGCTTCCGCTGC
TTTGCGCAGCGGACAGAGATGCCGCTGCCGTCGCCTCGACCGCGATTACC
CGAACCGCAACCTCGGCTTGTCGGGACCGCGGCGCCCGCGTCAGGCTCAT
GGTCGTTCGGCACCGCGTCGGGGGCGCCGGCAGCGTCGCCGCCAGGGGGC
TGGAGGGACGGCGCTTGGAGCGGCGGCGGCGGCGGCGTGGGGGCGGCGGC
CGGCACGGAAGATCCCGGTGCAGTGGGCGTAGAGGCGGGCTGCGGCGCAG
TGGCGCAGGGCGCGATGGCGTCGGCGGCGGCAGCGCGCGATCGCCGTTAC
GGCTGCGGCGGTGAAACCGATGAAACCGACCATGACGTAATCGTGCCGCC
ATGGAAACGGCAAGCCGATGGCGGCGGCGGCGGCGAAGACGGCGGCGGAC
AGTTTGGCGGTACTTTCTCGCCGCTGGGGTCGGCCACGCACTCAGTAGGC
AGCTTCTTCGCCGGAGCGGCGCCGCCGCTGTGGCGCCGCGGGGTTCGGCA
GCGGGCGCCGGCAGCGGCAGCGGCGCAGTGGGAGTCGATGGGACAGCATT
TTTCCGCTGCAAATGACCACGGCGGCTTCTCGTGGACGCTGGAATCACCA
TCGAGGGCCCGCGATGGCGGCGGCGGCAGCAGCAGCGTCGGCGGCAGCGG
CAGGGCCGGCTACGACGGCAGTGGCCGTGGCGGCACCGCTCTCGCGTACA
GCGGCCTGGTGAGTGACGCCACCGAGCGCGACGGCGCGAGCGCCACCGGC
TGCCGCGGCGGCGGCGGCGCGGGGACAATGGCAGCCAACTTCATGCCGTT
GACGGCGCACCACTTCGCTACGACGCACGTCAGTGATGCCCTCGAGACGC
TGCAGCGGCGGAAGCGGCGGACAGCGACCGGCGGGTCGGACGGCACCGTG
ACGCCGCCGGCAGCCGGTGGCACGGCAGGCCCCGGAGCCGCCATCACTGC
GCTCTTGGGCGACGGCGGTGGCGTTACGAATGGAGGTGCCGGCCAGGGGC
CATTGGGCTGGTTGCGGAGCGAGCACCAAGGAGAGGGCGATGCGTACGAT
GGCTTTTCGATCGGCGTGGGGCCAGCTGTGGCTCACGGTGCTCCCCACGG
TGCTACCTTCGCCGATGGCTTTGGCGGCGGCGGCGGCGGCGGCGGTCGCG
GCGACTATGGTGGCTATGCTGGTAATGGCGCGCCCAACATCTTATGGGAC
CAAGAGGCGCAGATCGCGCAAGGAAGCGACCCGAACGGGTCCCCGCAGCC
TCCTCTACCGGTTCCGGGGGCACCGGTGCCGGATCAGTGGGGCGCGCCGC
CGGCCCCGCAGGGCCTGACGATGTTCCAAAGGGGCGGCGACGCCGGGCTT
GGCGACGCCGCTGCTACTGCTATGCGTGGCACCTACCGCAGCGGCGGCTA
CGGCACGCCCCGTGCGTATGCGATGGAACTCGGGGTTGCAAGCGGCGTCG
TCGGCGCGGTGGCGGGTTACAATGGCGGCTACGGCAGGAAAGGCGGCGCT
TTTGCCGCCGCGGCGCCGCCCGCCGACACCGACATCGCTGCAGCCGGGCT
TGGTGCCCCGTGGTTCGCAAGCGTTACCCGAGGCGACGACCACTTGCGAG
GTGGCCCTCGCACAGGTATCGGTCGGTTCTCGCGGGCAGTAGACCCGTCG
CCGCTGCCGCCACTAACGCCGCCGCCACTGCCACCGCCGGTGCTGGCAAT
ACCGCCGGTTCTGTCGTCGGCGCCGCTTTCGCCATCAGGAGGATACTGGC
AGGCAATGCCGGAGATGGCGGCAGCGACGACGTCCGGTCCAGCCTGGTTG
CAGCCGGGAGGAGTGGCGCTCCGTCGGAACTACGCCCTCCCACCCGGCGC
GTCGGCGACCCCGGCGCCGCTGCTCGCGTACTTGGGGCCGGACTCTCGCA
TCGGGGCCGAGGCGTTGGCCGCTGCCGTGCACGGTAGCGGCGGCGCTGGC
TCTTACGGCGCTGGCGCTGGCGCTGGCAGTGCTGGCGGCGGCGTTGGCGG
TGGTGCTTATGGTGCTGGCGGCGGTTCGGGCACCGGCAGGGCTAGGGGCG
GTGGCGATCGCATGGGAGGCGACGGCGCCGGCGGCGTCGGGCGGGTGGCG
ACACAGGTGTGGCCGCAGCCCGTGTCGCTAGCGAATCGGCCTACAAGTGA
AGAACACTGGGACCGCCGGCTGGGCAGACGGCAAATGGAGTATCTGTAGC
GAGCGGTGAAATAGTCGCCTTATTACCGACGGTTTGGAGCAGCGGGGCTA
CAGAAAGGTGCATGTATGGCGGCTCCTCCGCCACTGGCCCTTCTCAGCCT
GAAATCAGTTACTGTAAATAGAAACTTCATTCCCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5624:791..3627-

>mRNA_P-wetherbeei_contig5624.1.1 ID=mRNA_P-wetherbeei_contig5624.1.1|Name=mRNA_P-wetherbeei_contig5624.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2610bp|location=Sequence derived from alignment at P-wetherbeei_contig5624:791..3627- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTCCCGCCGCCCTTGCCGCCGGCGGCGGCATCGGCTGCGCCGCC
GATGCAGGCGGCGTCGCGCACCAAGAGCCCCCCGCCGCCGACGCAGCCGT
TGACGGCGTCTGCTTTTGCTGTCGCCGCTGCGATGCGGCCGCCACCGTTG
TCACTGCCGCCGGACTCTGAAGGGCATGCGGCTGAGGACTTGCGTGGCGG
GAGAGGAGGCGAGGCTGGCAATGGTGGGCCGCAGGGTCACGACGAAAACA
CTCCTCCCGAAATGGCGACATTTGCCGGCTGGGATTCGGACGCCGTTCCG
GCGCCACTGCACGAGGCGGCACCGCAGCTCCGACAAAACGGAGGCGCGGC
TGCTGCTGCGGGCTTGTCGCGGCCACCGCCGCCGGCTTCTGCGGGGCGAG
GCTTCCGCTGCTTTGCGCAGCGGACAGAGATGCCGCTGCCGTCGCCTCGA
CCGCGATTACCCGAACCGCAACCTCGGCTTGTCGGGACCGCGGCGCCCGC
GTCAGGCTCATGGTCGTTCGGCACCGCGTCGGGGGCGCCGGCAGCGTCGC
CGCCAGGGGGCTGGAGGGACGGCGCTTGGAGCGGCGGCGGCGGCGGCGTG
GGGGCGGCGGCCGGCACGGAAGATCCCGGTGCAGTGGGCGTAGAGGCGGG
CTGCGGCGCAGTGGCGCAGGGCGCGATGGCGTCGGCGGCGGCAGCGCGCG
ATCGCCGTTACGGCTGCGGCGGTGAAACCGATGAAACCGACCATGACGTA
ATCGTGCCGCCATGGAAACGGCAAGCCGATGGCGGCGGCGGCGGCGAAGA
CGGCGGCGGACAGTTTGGCGGTACTTTCTCGCCGCTGGGGTCGGCCACGC
ACTCAGTAGGCAGCTTCTTCGCCGGAGCGGCGCCGCCGCTGTGGCGCCGC
GGGGTTCGGCAGCGGGCGCCGGCAGCGGCAGCGGCGCAGTGGGAGTCGAT
GGGACAGCATTTTTCCGCTGCAAATGACCACGGCGGCTTCTCGTGGACGC
TGGAATCACCATCGAGGGCCCGCGATGGCGGCGGCGGCAGCAGCAGCGTC
GGCGGCAGCGGCAGGGCCGGCTACGACGGCAGTGGCCGTGGCGGCACCGC
TCTCGCGTACAGCGGCCTGGTGAGTGACGCCACCGAGCGCGACGGCGCGA
GCGCCACCGGCTGCCGCGGCGGCGGCGGCGCGGGGACAATGGCAGCCAAC
TTCATGCCGTTGACGGCGCACCACTTCGCTACGACGCACGTCAGTGATGC
CCTCGAGACGCTGCAGCGGCGGAAGCGGCGGACAGCGACCGGCGGGTCGG
ACGGCACCGTGACGCCGCCGGCAGCCGGTGGCACGGCAGGCCCCGGAGCC
GCCATCACTGCGCTCTTGGGCGACGGCGGTGGCGTTACGAATGGAGGTGC
CGGCCAGGGGCCATTGGGCTGGTTGCGGAGCGAGCACCAAGGAGAGGGCG
ATGCGTACGATGGCTTTTCGATCGGCGTGGGGCCAGCTGTGGCTCACGGT
GCTCCCCACGGTGCTACCTTCGCCGATGGCTTTGGCGGCGGCGGCGGCGG
CGGCGGTCGCGGCGACTATGGTGGCTATGCTGGTAATGGCGCGCCCAACA
TCTTATGGGACCAAGAGGCGCAGATCGCGCAAGGAAGCGACCCGAACGGG
TCCCCGCAGCCTCCTCTACCGGTTCCGGGGGCACCGGTGCCGGATCAGTG
GGGCGCGCCGCCGGCCCCGCAGGGCCTGACGATGTTCCAAAGGGGCGGCG
ACGCCGGGCTTGGCGACGCCGCTGCTACTGCTATGCGTGGCACCTACCGC
AGCGGCGGCTACGGCACGCCCCGTGCGTATGCGATGGAACTCGGGGTTGC
AAGCGGCGTCGTCGGCGCGGTGGCGGGTTACAATGGCGGCTACGGCAGGA
AAGGCGGCGCTTTTGCCGCCGCGGCGCCGCCCGCCGACACCGACATCGCT
GCAGCCGGGCTTGGTGCCCCGTGGTTCGCAAGCGTTACCCGAGGCGACGA
CCACTTGCGAGGTGGCCCTCGCACAGGTATCGGTCGGTTCTCGCGGGCAG
TAGACCCGTCGCCGCTGCCGCCACTAACGCCGCCGCCACTGCCACCGCCG
GTGCTGGCAATACCGCCGGTTCTGTCGTCGGCGCCGCTTTCGCCATCAGG
AGGATACTGGCAGGCAATGCCGGAGATGGCGGCAGCGACGACGTCCGGTC
CAGCCTGGTTGCAGCCGGGAGGAGTGGCGCTCCGTCGGAACTACGCCCTC
CCACCCGGCGCGTCGGCGACCCCGGCGCCGCTGCTCGCGTACTTGGGGCC
GGACTCTCGCATCGGGGCCGAGGCGTTGGCCGCTGCCGTGCACGGTAGCG
GCGGCGCTGGCTCTTACGGCGCTGGCGCTGGCGCTGGCAGTGCTGGCGGC
GGCGTTGGCGGTGGTGCTTATGGTGCTGGCGGCGGTTCGGGCACCGGCAG
GGCTAGGGGCGGTGGCGATCGCATGGGAGGCGACGGCGCCGGCGGCGTCG
GGCGGGTGGCGACACAGGTGTGGCCGCAGCCCGTGTCGCTAGCGAATCGG
CCTACAAGTGAAGAACACTGGGACCGCCGGCTGGGCAGACGGCAAATGGA
GTATCTGTAG
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