mRNA_P-wetherbeei_contig56229.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56229.2.1
Unique NamemRNA_P-wetherbeei_contig56229.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: A0A6J7JHP7_9ZZZZ (Unannotated protein n=5 Tax=root TaxID=1 RepID=A0A6J7JHP7_9ZZZZ)

HSP 1 Score: 241 bits (615), Expect = 5.800e-77
Identity = 123/127 (96.85%), Postives = 125/127 (98.43%), Query Frame = 1 
Query:    1 ARRIDDALDRLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRFSTRPDPTDNEGEDL 381
            ARRIDD LDRLGPADA KAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALG++EPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRFSTRPDPTDNEGEDL
Sbjct:  256 ARRIDDVLDRLGPADAPKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGVEEPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRFSTRPDPTDNEGEDL 382
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: UPI001B30C72A (hypothetical protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001B30C72A)

HSP 1 Score: 185 bits (469), Expect = 5.780e-55
Identity = 93/128 (72.66%), Postives = 109/128 (85.16%), Query Frame = 1 
Query:    7 RIDDALDRLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRFSTRPDP---TDNEGEDL 381
            RID+ LDRLGPADA KA+GV ETLEALRRGEVETL+L  GAL+ R AYAGP+P+LLATDP ELR+LG++EP    L+E + RAA+ QDADLLPLHAP+GALPDGVGAVLRFS+RPDP   T ++GEDL
Sbjct:  258 RIDEVLDRLGPADAPKAIGVGETLEALRRGEVETLILQDGALDDRRAYAGPDPMLLATDPEELRSLGVEEPAAERLDELLLRAAIAQDADLLPLHAPIGALPDGVGAVLRFSSRPDPRPSTRDDGEDL 385
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: UPI001554F947 (hypothetical protein n=1 Tax=Nocardioides sp. zg-1308 TaxID=2736253 RepID=UPI001554F947)

HSP 1 Score: 162 bits (410), Expect = 2.960e-46
Identity = 86/116 (74.14%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    7 RIDDALDRLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRFSTRPD 354
            RID  LDRLG    AKAVGVAET+EALRRGEVETLVLL GALE REAY GPEPLLL   P EL A G+++P    L+EAM RAA+GQDADLLPL+APV  LPDGVGAVLRF TRPD
Sbjct:  258 RIDGVLDRLG--GGAKAVGVAETVEALRRGEVETLVLLQGALEDREAYVGPEPLLLGHTPDELTAFGVEDPAATRLDEAMVRAAIGQDADLLPLYAPVSLLPDGVGAVLRFDTRPD 371
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: A0A6J4NVZ6_9ACTN (Uncharacterized protein n=1 Tax=uncultured Nocardioides sp. TaxID=198441 RepID=A0A6J4NVZ6_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 1.290e-44
Identity = 85/117 (72.65%), Postives = 93/117 (79.49%), Query Frame = 1 
Query:    7 RIDDALDRLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRFSTRPDP 357
            R+D  L+RLG    AKAVGVAET+EALRRGEVETLVLL GAL+ REAY GPEPLLL     EL A G+D PGR  L+EAM RAA+GQDA LLPL+APVG LPDGVGAVLRF TRP P
Sbjct:  258 RLDAVLERLG--GGAKAVGVAETVEALRRGEVETLVLLQGALDDREAYVGPEPLLLGHAREELEAFGVDAPGRTRLDEAMVRAAIGQDAGLLPLYAPVGLLPDGVGAVLRFDTRPVP 372
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: UPI001B31BD3C (hypothetical protein n=1 Tax=Nocardioides sp. SYSU D00065 TaxID=2817378 RepID=UPI001B31BD3C)

HSP 1 Score: 155 bits (393), Expect = 9.830e-44
Identity = 82/116 (70.69%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    7 RIDDALDRLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRFSTRPD 354
            RID  LDRLG    A   GVAET+EALRRGEVETLVLL G L+ REAY GPEPLLL     EL+A G+DEP    L EA+ RAA+GQDADLLPL+APVG LPDGVGAVLRF TRPD
Sbjct:  258 RIDSVLDRLG--GGASVAGVAETVEALRRGEVETLVLLQGVLDDREAYVGPEPLLLGHTADELKAFGVDEPAPAPLAEALVRAAIGQDADLLPLYAPVGLLPDGVGAVLRFDTRPD 371
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: A0A0D0WW81_9ACTN (Peptide chain release factor 1 n=9 Tax=Micromonospora TaxID=1873 RepID=A0A0D0WW81_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 4.880e-14
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    4 RRIDDALDRLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLLPLHAPVGA--LPDGVGAVLRFSTRPDPTDNEG 372
            +R+   LDR G  +   A G+   + ALRR +V+T++++       + + GPEP  +ATDPG+L A+ + +P RV  + A+ RA +G DA+L  L AP  A  L DGVGAVLR+     P  + G
Sbjct:  252 QRVTATLDRFGVQEDVGA-GLDAVVSALRRNQVDTMLIVDDPSSTAQLWVGPEPTDIATDPGQLTAVSVADPRRVRADAALVRALVGTDAELTVL-APDEAPELTDGVGAVLRYVDAATPGRSHG 374
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: A0A562IF04_MICOL (Uncharacterized protein n=1 Tax=Micromonospora olivasterospora TaxID=1880 RepID=A0A562IF04_MICOL)

HSP 1 Score: 74.7 bits (182), Expect = 3.350e-13
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:    4 RRIDDALDRLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLL---PLHAPVGALPDGVGAVLRF 339
            +RI+ ALDR G  +   A G+   + ALRR +V+T++++       + + GPEP  +ATDP +L A+ + +P RV  + A+ RA +G  A+L    P  AP   L DGVGAVLR+
Sbjct:  252 QRINSALDRFGMQEDVGA-GLDAVVSALRRNQVDTMLIVDDPSSTEQLWIGPEPTHIATDPAQLAAMSVLDPHRVRADAALVRALVGTHAELAVLGPDEAP--DLTDGVGAVLRY 363
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: A0A6N7I826_9ACTN (Uncharacterized protein n=1 Tax=Streptosporangiales bacterium TaxID=2604148 RepID=A0A6N7I826_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 2.190e-12
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 1 
Query:    1 ARRIDDALD----RLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRF 339
            AR  D  LD     LG  D A   G+A+T+ AL+RG+VETL+L        E   GPEP  LA    ELR LG+ +P     + A+ RA +G D +L+ +      L DGVGA+LR+
Sbjct:  254 ARHSDAVLDAYQRELGQRDRATE-GLADTVVALQRGQVETLLLNDDPSSVAELRIGPEPAQLAYADAELRELGVRDPAADRADAALVRALVGTDGELVTVPDDAATLTDGVGALLRY 369
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: UPI0008345CE3 (hypothetical protein n=1 Tax=Actinomadura formosensis TaxID=60706 RepID=UPI0008345CE3)

HSP 1 Score: 69.7 bits (169), Expect = 1.990e-11
Identity = 44/100 (44.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:   61 GVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRA-LGIDEPGRVVLEEAMFRAALGQDADLLPLHAPVGALPDGVGAVLRFSTRPDP 357
            G++ET  ALR G+VETL+L          + GP+P  +A  PGELR   GI +P     + A+ RAA   D+DL+ L  P GA    VGAVLR++T P+P
Sbjct:  271 GLSETTTALRHGQVETLILTDDRDSDARLWIGPDPAQVAATPGELREEFGITDPYEDRADAALVRAAAATDSDLVVLP-PNGAT--RVGAVLRYTTTPEP 367
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BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Match: UPI00083653F3 (hypothetical protein n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00083653F3)

HSP 1 Score: 68.9 bits (167), Expect = 3.740e-11
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   61 GVAETLEALRRGEVETLVLLAGALEGREAYAGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADL--LPLHAPVGALPDGVGAVLRFS 342
            G+  T+EA+RRG+VE L+L          + GP+P+ +A  P ELR LG+DEP     + A+ RA    D +L  LP  +P   L  GVGAVLR++
Sbjct:  270 GLPATVEAVRRGQVEALLLDEDPESPARLWVGPDPVQVAASPDELRRLGVDEPVEERADAALVRAVAATDGELVVLPADSPNANL--GVGAVLRYA 363
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56229.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J7JHP7_9ZZZZ5.800e-7796.85Unannotated protein n=5 Tax=root TaxID=1 RepID=A0A... [more]
UPI001B30C72A5.780e-5572.66hypothetical protein n=2 Tax=unclassified Nocardio... [more]
UPI001554F9472.960e-4674.14hypothetical protein n=1 Tax=Nocardioides sp. zg-1... [more]
A0A6J4NVZ6_9ACTN1.290e-4472.65Uncharacterized protein n=1 Tax=uncultured Nocardi... [more]
UPI001B31BD3C9.830e-4470.69hypothetical protein n=1 Tax=Nocardioides sp. SYSU... [more]
A0A0D0WW81_9ACTN4.880e-1439.20Peptide chain release factor 1 n=9 Tax=Micromonosp... [more]
A0A562IF04_MICOL3.350e-1340.00Uncharacterized protein n=1 Tax=Micromonospora oli... [more]
A0A6N7I826_9ACTN2.190e-1241.03Uncharacterized protein n=1 Tax=Streptosporangiale... [more]
UPI0008345CE31.990e-1144.00hypothetical protein n=1 Tax=Actinomadura formosen... [more]
UPI00083653F33.740e-1141.67hypothetical protein n=1 Tax=Actinomadura hibisca ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56229contigP-wetherbeei_contig56229:124..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog644283.Micau_2863
Model size384
Max annot lvl201174|Actinobacteria
KEGG koko:K03265
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0008150,GO:0009628,GO:0016020,GO:0030312,GO:0036293,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0070482,GO:0071944
Exons1
Evalue3.26e-16
EggNOG OGsCOG1503@1|root,COG1503@2|Bacteria,2GNN3@201174|Actinobacteria,4D8SY@85008|Micromonosporales
Descriptiontranslation release factor activity
Cds size384
COG categoryJ
BRITEko00000,ko00001,ko03012,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.6526837-CDS-P-wetherbeei_contig56229:123..5071683186836.6526837-CDS-P-wetherbeei_contig56229:123..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56229 124..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56229.2.1prot_P-wetherbeei_contig56229.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56229 124..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56229.2.1

>prot_P-wetherbeei_contig56229.2.1 ID=prot_P-wetherbeei_contig56229.2.1|Name=mRNA_P-wetherbeei_contig56229.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
ARRIDDALDRLGPADAAKAVGVAETLEALRRGEVETLVLLAGALEGREAY
AGPEPLLLATDPGELRALGIDEPGRVVLEEAMFRAALGQDADLLPLHAPV
GALPDGVGAVLRFSTRPDPTDNEGEDL*
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mRNA from alignment at P-wetherbeei_contig56229:124..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56229.2.1 ID=mRNA_P-wetherbeei_contig56229.2.1|Name=mRNA_P-wetherbeei_contig56229.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig56229:124..507- (Phaeothamnion wetherbeei SAG_119_79)
GCACGCCGCATCGACGACGCGCTCGACCGCCTCGGTCCCGCCGACGCGGC
CAAGGCCGTCGGCGTCGCGGAGACCCTGGAGGCGCTGCGACGCGGCGAGG
TGGAGACGCTGGTGCTGCTGGCCGGCGCGCTCGAGGGCCGCGAGGCGTAC
GCCGGACCGGAGCCGCTGCTGCTCGCCACCGACCCCGGGGAGCTCCGGGC
CCTCGGCATCGACGAGCCGGGACGCGTCGTGCTGGAGGAGGCGATGTTCC
GCGCCGCCCTCGGCCAGGACGCCGACCTGCTGCCGCTGCACGCCCCCGTC
GGTGCGCTGCCCGACGGAGTGGGCGCGGTGCTCCGCTTCTCGACCCGACC
CGACCCGACCGACAACGAAGGTGAGGACCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56229:124..507-

>mRNA_P-wetherbeei_contig56229.2.1 ID=mRNA_P-wetherbeei_contig56229.2.1|Name=mRNA_P-wetherbeei_contig56229.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig56229:124..507- (Phaeothamnion wetherbeei SAG_119_79)
GCACGCCGCATCGACGACGCGCTCGACCGCCTCGGTCCCGCCGACGCGGC
CAAGGCCGTCGGCGTCGCGGAGACCCTGGAGGCGCTGCGACGCGGCGAGG
TGGAGACGCTGGTGCTGCTGGCCGGCGCGCTCGAGGGCCGCGAGGCGTAC
GCCGGACCGGAGCCGCTGCTGCTCGCCACCGACCCCGGGGAGCTCCGGGC
CCTCGGCATCGACGAGCCGGGACGCGTCGTGCTGGAGGAGGCGATGTTCC
GCGCCGCCCTCGGCCAGGACGCCGACCTGCTGCCGCTGCACGCCCCCGTC
GGTGCGCTGCCCGACGGAGTGGGCGCGGTGCTCCGCTTCTCGACCCGACC
CGACCCGACCGACAACGAAGGTGAGGACCTCTGA
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