mRNA_P-wetherbeei_contig5621.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5621.3.1
Unique NamemRNA_P-wetherbeei_contig5621.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: D7FI51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI51_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.600e-32
Identity = 70/124 (56.45%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 RGSGTASLEIELLDALAGV--KGRRAGSGDTAAIDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            R S    LE +LL A+ GV  +GR         +D+A+ ALE DGG P  A  P VDG WRL++ TTP +ASP+QRSFVGVD F IYQ+IDL +      PPTVTNVVDFG  VGQLRV ALAS
Sbjct:  105 RASKAEELEADLLSAIKGVQGRGRDVTQEQRELVDKAVEALESDGGAPNAASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEV----PPTVTNVVDFGPRVGQLRVTALAS 224          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: A0A835Z824_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z824_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.120e-25
Identity = 57/91 (62.64%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   94 IDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            +D  IA LE  GG+P  A    +DG WRLLY +TP +ASPIQRSFV VDAF IYQNI L  G DA  P TV NVVDFG  VG+L V ALAS
Sbjct:   16 VDSLIAELEASGGVPDGACADSIDGVWRLLYTSTPGTASPIQRSFVSVDAFSIYQNIALY-GADA--PATVANVVDFGARVGRLEVAALAS 103          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: A0A1Y1IM24_KLENI (Fibrillin family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IM24_KLENI)

HSP 1 Score: 103 bits (257), Expect = 5.700e-24
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   34 LLDALAGVKGRRAGSGDTA--AIDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            LLDA++GV GR   + D     ID  +  LE+DGGL  P     ++GRW+L+Y T P +ASPIQRSFVGVDAF ++Q I L   +D    P VTN V+FG  +G+LRV+A+AS
Sbjct:   24 LLDAISGVGGRGRVASDLQKKVIDDCVRVLEEDGGLQNPTEAESLEGRWQLVYTTRPGTASPIQRSFVGVDAFTVFQEIVLRNTDD----PRVTNTVNFGKKIGELRVEAVAS 132          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: A0A2V0NY54_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NY54_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 1.160e-23
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   25 EIELLDALAGVKGR-RAGSGDTAA--IDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            E+ +LD L G +GR + G  D A   ++ A++ALE +GG   P   P ++G+WRLLY + P SASPIQR+F GV+AF IYQ IDL     A   P V N+VDFG  +G L VQA AS
Sbjct:   48 ELAVLDVLRGARGRGKEGLSDAAVQQLNLAVSALEANGGAEAPTTLPAINGKWRLLYTSRPGSASPIQRTFTGVEAFSIYQQIDL-----ASEQPRVNNIVDFGERIGYLIVQAEAS 159          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: A0A835YCB0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YCB0_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 1.520e-23
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   25 EIELLDALAGVKGR-RAGSG--DTAAIDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIA----GEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            E  +L AL+G KGR + G    D ++++ A+A LE DGG+ +P + P +DGRWRLLY + P SASPIQR+F GV++F I+Q+++L A    GE+ G  P V NVV+FG +VG L+V+A AS
Sbjct:   40 EAAVLAALSGAKGRGKEGLSPEDLSSLEAAVAKLEADGGVVEPTLSPTLDGRWRLLYTSRPGSASPIQRTFTGVESFGIFQDVELRAEAAEGEEGG--PRVNNVVEFG-AVGYLKVEAQAS 157          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: A0A0D2MM87_9CHLO (Putative plastid-lipid-associated protein 12 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MM87_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 1.710e-23
Identity = 59/120 (49.17%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   16 ASLEIELLDALAGVKGR-RAGSGDTAA--IDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            A+ E+ +LDAL   KGR + G  + A   +  AI+ LE+DGG+  P     +DG+WRLLY + P SASPIQR+F GV+AF+IYQ +DL     +   P V NVVDFG  +G L VQA AS
Sbjct:   22 ATTELAVLDALRSAKGRGKEGLSEEALQQLSLAISVLEQDGGVADPTTLDAIDGKWRLLYTSRPGSASPIQRTFTGVEAFKIYQEVDL-----SSDLPRVNNVVDFGEEIGYLIVQAKAS 136          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: A0A2K1KH12_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KH12_PHYPA)

HSP 1 Score: 101 bits (252), Expect = 5.190e-23
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   19 SLEIELLDALAGV--KGRRAGSGDTAAIDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            S E  L++AL GV  +GR A S     +  A++ALE  GG+P+P   P ++GRW+L+Y T P +ASPIQR+FVGVDAF ++Q I L   +D    P V+N+V F   +G+L+V+A AS
Sbjct:   68 SGETALVEALIGVQGRGRSASSKQLQDVAEAVSALEATGGVPEPTGSPLIEGRWQLMYTTRPGTASPIQRTFVGVDAFAVFQEIVLRGTDD----PRVSNIVRFSEQIGELKVEAAAS 181          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: A0A6V1SXP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SXP2_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 6.510e-23
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   34 LLDALAGVKGRRAGSGDTAAIDRA---IAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRP--PTVTNVVDFGGSVGQLRVQALAS 366
            LL+ LA +  R AG+ D AA +R    +A LE+  G+P PA  P ++GRWRLL+ TTP +ASPIQRSFVG  AF ++Q+IDL       RP  PTV NVV+FG S+G L V+ALAS
Sbjct:   68 LLETLAALTRRGAGA-DAAAAERVAEQVAVLERTQGIPDPADYPGLNGRWRLLHTTTPGTASPIQRSFVGAAAFSVFQDIDL------ARPDRPTVANVVEFG-SLGVLTVEALAS 175          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: D8RR92_SELML (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RR92_SELML)

HSP 1 Score: 96.7 bits (239), Expect = 7.750e-23
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   25 EIELLDALAGV--KGRRAGSGDTAAIDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            E  L+DAL GV  +GR A      AI  A+ ALE +GG+ +P     ++G WRL+Y T PS+ASPIQR+FVGVDAF ++Q+I L    D      V+N+V F   +G+L+V+A AS
Sbjct:    1 EEALIDALVGVGGRGRSASQEQLKAIANAVTALESEGGIEEPTKSELIEGVWRLMYTTRPSTASPIQRTFVGVDAFTVFQDIKLSDRSDQ----RVSNIVKFSEKIGELKVEAEAS 112          
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Match: A0A0E0LKE7_ORYPU (PAP_fibrillin domain-containing protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LKE7_ORYPU)

HSP 1 Score: 100 bits (250), Expect = 8.820e-23
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   16 ASLEIELLDALAGVKGRRAGSGDTAAIDRAIAALEKDGGLPKPAMRPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPPTVTNVVDFGGSVGQLRVQALAS 366
            A  E ELLDALAGV+GR  G      ++ A+ +LE+ GGLP P     ++G W+L++ T P SASPIQR+FVGVD+F+I+Q + L   +     P V NVV F  S+G+L+V+A A+
Sbjct:   64 AGAEAELLDALAGVQGRGRGE-----VESAVQSLEELGGLPDPTNSSLIEGSWQLIFTTRPGSASPIQRTFVGVDSFKIFQEVYLRTDD-----PRVVNVVRFSESIGELKVEAEAT 170          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5621.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI51_ECTSI1.600e-3256.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z824_9STRA5.120e-2562.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Y1IM24_KLENI5.700e-2450.44Fibrillin family protein n=1 Tax=Klebsormidium nit... [more]
A0A2V0NY54_9CHLO1.160e-2349.57Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A835YCB0_9CHLO1.520e-2349.59Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A0D2MM87_9CHLO1.710e-2349.17Putative plastid-lipid-associated protein 12 n=1 T... [more]
A0A2K1KH12_PHYPA5.190e-2346.61Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A6V1SXP2_HETAK6.510e-2353.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8RR92_SELML7.750e-2346.55PAP_fibrillin domain-containing protein (Fragment)... [more]
A0A0E0LKE7_ORYPU8.820e-2347.01PAP_fibrillin domain-containing protein n=1 Tax=Or... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5621contigP-wetherbeei_contig5621:3411..3776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FI51
PFAMsPAP_fibrillin
Model size366
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons1
Evalue2.62e-33
EggNOG OGs2CN7K@1|root,2QUCQ@2759|Eukaryota
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-10_003560.1
DescriptionPAP_fibrillin
Cds size366
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.377852-CDS-P-wetherbeei_contig5621:3410..37761683186836.377852-CDS-P-wetherbeei_contig5621:3410..3776Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5621 3411..3776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5621.3.1prot_P-wetherbeei_contig5621.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5621 3411..3776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5621.3.1

>prot_P-wetherbeei_contig5621.3.1 ID=prot_P-wetherbeei_contig5621.3.1|Name=mRNA_P-wetherbeei_contig5621.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
RGSGTASLEIELLDALAGVKGRRAGSGDTAAIDRAIAALEKDGGLPKPAM
RPEVDGRWRLLYITTPSSASPIQRSFVGVDAFRIYQNIDLIAGEDAGRPP
TVTNVVDFGGSVGQLRVQALAS
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mRNA from alignment at P-wetherbeei_contig5621:3411..3776+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5621.3.1 ID=mRNA_P-wetherbeei_contig5621.3.1|Name=mRNA_P-wetherbeei_contig5621.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig5621:3411..3776+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCAGCGGCACGGCCTCCTTGGAAATCGAGCTGCTTGACGCGCTCGC TGGGGTCAAGGGGCGGCGCGCCGGCAGCGGCGACACCGCCGCCATCGACC GGGCCATCGCCGCGCTCGAAAAGGATGGCGGACTGCCGAAGCCGGCGATG CGCCCGGAGGTGGACGGAAGGTGGCGCCTTCTCTATATCACGACACCGAG CAGCGCCAGCCCGATCCAGCGCTCCTTCGTCGGCGTCGACGCCTTTCGCA TCTACCAGAACATCGACCTCATCGCCGGTGAAGACGCCGGGCGGCCGCCG ACCGTCACGAACGTGGTCGACTTCGGGGGGAGCGTGGGCCAGCTTCGGGT GCAGGCACTGGCGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5621:3411..3776+

>mRNA_P-wetherbeei_contig5621.3.1 ID=mRNA_P-wetherbeei_contig5621.3.1|Name=mRNA_P-wetherbeei_contig5621.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig5621:3411..3776+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGGCAGCGGCACGGCCTCCTTGGAAATCGAGCTGCTTGACGCGCTCGC
TGGGGTCAAGGGGCGGCGCGCCGGCAGCGGCGACACCGCCGCCATCGACC
GGGCCATCGCCGCGCTCGAAAAGGATGGCGGACTGCCGAAGCCGGCGATG
CGCCCGGAGGTGGACGGAAGGTGGCGCCTTCTCTATATCACGACACCGAG
CAGCGCCAGCCCGATCCAGCGCTCCTTCGTCGGCGTCGACGCCTTTCGCA
TCTACCAGAACATCGACCTCATCGCCGGTGAAGACGCCGGGCGGCCGCCG
ACCGTCACGAACGTGGTCGACTTCGGGGGGAGCGTGGGCCAGCTTCGGGT
GCAGGCACTGGCGAGC
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