mRNA_P-wetherbeei_contig56201.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56201.1.1
Unique NamemRNA_P-wetherbeei_contig56201.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: A0A6L6AK06_9ACTN (Thiamine phosphate synthase n=3 Tax=root TaxID=1 RepID=A0A6L6AK06_9ACTN)

HSP 1 Score: 281 bits (719), Expect = 5.950e-95
Identity = 146/156 (93.59%), Postives = 150/156 (96.15%), Query Frame = 1
Query:   52 LVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGRWGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADPA 519
            +VRTVLECADAGLEAVVVREHDLD   RHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQ+PPGEGRWGRSCHAPGEV VAAAEGAAWVTLSPYAASASKPGHGPALPPEA+AGHPVPVLALGGVDVTTA AAR +GAHGVAVMGAVMRAADPA
Sbjct:    1 MVRTVLECADAGLEAVVVREHDLDPPSRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQQPPGEGRWGRSCHAPGEVRVAAAEGAAWVTLSPYAASASKPGHGPALPPEAYAGHPVPVLALGGVDVTTAAAARASGAHGVAVMGAVMRAADPA 156          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: A0A4Q2SE26_9ACTN (Thiamine phosphate synthase n=2 Tax=Nocardioides ganghwensis TaxID=252230 RepID=A0A4Q2SE26_9ACTN)

HSP 1 Score: 252 bits (644), Expect = 3.010e-83
Identity = 132/173 (76.30%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 PRLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGRWGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADPA 519
            PRLVLLTDRSQLRLGRGLVRTV ECADAGL AVVVREHDLD  +R ALVA LAA+DGLTV+SSR+PD +A GLHLAAHQ PP  G WGRSCH+  +VA AA +GA+WVTLSPYAASASKPGHGPALP   +AGHP+PVLAL G+D T A +A  AGAHG+AVMGAVMR+A+PA
Sbjct:    3 PRLVLLTDRSQLRLGRGLVRTVRECADAGLGAVVVREHDLDPGQRQALVAALAAIDGLTVISSRIPDDSADGLHLAAHQHPPAGGAWGRSCHSRADVARAAEQGASWVTLSPYAASASKPGHGPALPASDYAGHPLPVLALAGIDATNAASAVAAGAHGIAVMGAVMRSAEPA 175          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: A0A0Q6V956_9ACTN (TMP-TENI domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A0Q6V956_9ACTN)

HSP 1 Score: 251 bits (640), Expect = 1.180e-82
Identity = 133/173 (76.88%), Postives = 145/173 (83.82%), Query Frame = 1
Query:    1 PRLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGRWGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADPA 519
            PRLV+LTDR+QLRLGR LVRTV ECADAGL AVVVREHDL  S R ALV +L ++ GLTV+SSR+PDP+A GLH AAHQ  P  G WGRSCH+P EV  AA EGA+WVTLSPYA SASKPGHGPALPP AFAGHPVPVLAL G+D+  A AAR AGAHGVAVMGAVMRAADPA
Sbjct:    3 PRLVVLTDRAQLRLGRALVRTVRECADAGLSAVVVREHDLPMSARSALVEQLVSIPGLTVISSRVPDPSAQGLHCAAHQPVPSSGPWGRSCHSPAEVERAAGEGASWVTLSPYAVSASKPGHGPALPPGAFAGHPVPVLALAGIDLRNAAAARVAGAHGVAVMGAVMRAADPA 175          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: A0A4Z1CI92_9ACTN (Thiamine phosphate synthase n=1 Tax=Nocardioides eburneiflavus TaxID=2518372 RepID=A0A4Z1CI92_9ACTN)

HSP 1 Score: 248 bits (634), Expect = 2.030e-81
Identity = 130/173 (75.14%), Postives = 145/173 (83.82%), Query Frame = 1
Query:    1 PRLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGRWGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADPA 519
            PRLVLLTDRSQLRLGRGLVRTV EC DAGL AVVVREHDL+  +RHAL++ LAA+DGLTV+SSR+PD  AHGLHLAAHQ  P +G WGRSCH+  +VA AA +GA+W TLSPYA SASKPGHGPALP  A+AGH +PVLAL G+D T A AA  AGAHGVAVMGAVMRA DPA
Sbjct:    3 PRLVLLTDRSQLRLGRGLVRTVRECVDAGLRAVVVREHDLEPGQRHALLSTLAAIDGLTVVSSRIPDDCAHGLHLAAHQPAPADGCWGRSCHSRADVARAAGQGASWTTLSPYAVSASKPGHGPALPASAWAGHALPVLALAGIDATNAAAAVAAGAHGVAVMGAVMRAEDPA 175          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: A0A2T8F7E3_9ACTN (Thiamine phosphate synthase n=1 Tax=Nocardioides gansuensis TaxID=2138300 RepID=A0A2T8F7E3_9ACTN)

HSP 1 Score: 219 bits (557), Expect = 5.200e-70
Identity = 119/173 (68.79%), Postives = 130/173 (75.14%), Query Frame = 1
Query:    1 PRLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGRWGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADPA 519
            P++VLLTDRSQL+LGR LVRTV EC DAGLE VVVREHDL A  RHALV  LA +  LT ++SR+PDPAAHGLH    Q  P  G WGRSCH+  +VA AA EGA WVTLSPYAASASKPGHGPAL       HP PVLALGG+D   A  A  AGAHGVAVMGAVMRA +PA
Sbjct:    4 PKVVLLTDRSQLQLGRALVRTVRECVDAGLEWVVVREHDLGAEARHALVEALAGIPSLTTITSRIPDPAAHGLHAGGSQAAPAAGPWGRSCHSRADVARAAQEGARWVTLSPYAASASKPGHGPALADGDLESHPAPVLALGGIDPGNAADALAAGAHGVAVMGAVMRADEPA 176          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: A0A401Y8I9_9ACTN (Putative thiamine-phosphate synthase n=2 Tax=Nocardioides TaxID=1839 RepID=A0A401Y8I9_9ACTN)

HSP 1 Score: 214 bits (545), Expect = 3.360e-68
Identity = 122/172 (70.93%), Postives = 135/172 (78.49%), Query Frame = 1
Query:    4 RLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGRWGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHP-VPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADP 516
            RL+LLTDR+QL  GR L RT+ EC DAGL+AVVVREHDL A  R ALVARLA +D LTV+SSR+ DPAAHGLHLAAHQ    +G  GRSCH+  +V  AAA G AW TLSPYAASASKPGHGP LPP+AF G P +PV ALGG+D   A AA  AGAHGVAVMGAVMRAADP
Sbjct:    4 RLLLLTDRAQLSKGRSLSRTIAECVDAGLDAVVVREHDLAARDRRALVARLAELDRLTVISSRIADPAAHGLHLAAHQERV-DGWHGRSCHSADDVRRAAAAGVAWATLSPYAASASKPGHGPPLPPDAFTGDPGIPVFALGGIDPGNARAAVEAGAHGVAVMGAVMRAADP 174          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: UPI000D75025D (thiamine phosphate synthase n=1 Tax=Nocardioides solisilvae TaxID=1542435 RepID=UPI000D75025D)

HSP 1 Score: 214 bits (545), Expect = 3.830e-68
Identity = 123/174 (70.69%), Postives = 132/174 (75.86%), Query Frame = 1
Query:    1 PRLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQR-PPGEGRWGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADPA 519
            PRL+LLTDR QL  GRGL  TV  C  AGL AVVVREHDL A  R ALVARL+ + GLTVL+SRLPDP+A G+HLAA Q  P G   WGRSCH    V  AAAEGA W TLSPYAASASKPG+GPALP  AFAGHP+PVLALGGV+  TA AA  AGAHGVAVMG VMR  DPA
Sbjct:    5 PRLLLLTDRRQLPAGRGLAATVAACHAAGLRAVVVREHDLSAPVRRALVARLSRLPGLTVLTSRLPDPSARGMHLAADQPVPSGATWWGRSCHDVAAVGRAAAEGARWATLSPYAASASKPGYGPALPASAFAGHPLPVLALGGVEPGTAAAAVDAGAHGVAVMGGVMRETDPA 178          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: A0A5B1M831_9ACTN (Thiamine phosphate synthase n=2 Tax=Nocardioides antri TaxID=2607659 RepID=A0A5B1M831_9ACTN)

HSP 1 Score: 211 bits (537), Expect = 5.180e-67
Identity = 121/173 (69.94%), Postives = 136/173 (78.61%), Query Frame = 1
Query:    1 PRLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGRWGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADPA 519
            PRL+LLTDRSQLRLGR LVRTV EC  AGL AVVVREHDL  + R ALVA LAA+DGLTV+SSR+PDPAAHGLHLAA Q P  +G +GRSCH+  +V  AAA GAAW TLSPYA + SKPG+GP LPP A+   P+P  ALGG+    A AAR AGAHGVAVMGAVMRA +PA
Sbjct:    2 PRLLLLTDRSQLRLGRALVRTVEECVRAGLRAVVVREHDLVPASRAALVADLAAIDGLTVISSRVPDPAAHGLHLAADQ-PVCDGWFGRSCHSVADVRRAAATGAAWATLSPYAPTPSKPGYGPPLPPGAYDDLPLPTYALGGITPGRAAAAREAGAHGVAVMGAVMRAEEPA 173          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: A0A4U2YH24_9ACTN (Thiamine phosphate synthase n=1 Tax=Nocardioides jishulii TaxID=2575440 RepID=A0A4U2YH24_9ACTN)

HSP 1 Score: 208 bits (530), Expect = 1.040e-65
Identity = 120/177 (67.80%), Postives = 137/177 (77.40%), Query Frame = 1
Query:    1 PRLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPP----GEGR-WGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADP 516
            PRLV+LTDR+QL   R LV T++EC  AGL AVVVREHDL+A  R ALVA+LA V GL V+SSRLPDPAAHGLHLA+HQ PP    G  R WGRSCH+  EVA AAAEGAAW TLSP+AA+ SKPG+GPALP +A+A H +PVLALGG+    A  AR AGA+GVAVMG VMRA  P
Sbjct:   13 PRLVVLTDRTQLPARRCLVETIIECRRAGLGAVVVREHDLEAYARRALVAQLAQVPGLWVISSRLPDPAAHGLHLASHQPPPRPWSGRARRWGRSCHSRSEVARAAAEGAAWATLSPFAATRSKPGYGPALPADAWAEHDIPVLALGGLTPDNAARAREAGAYGVAVMGEVMRADRP 189          
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Match: UPI000694FCC3 (thiamine phosphate synthase n=1 Tax=Nocardioides alkalitolerans TaxID=281714 RepID=UPI000694FCC3)

HSP 1 Score: 207 bits (527), Expect = 3.270e-65
Identity = 128/180 (71.11%), Postives = 134/180 (74.44%), Query Frame = 1
Query:    7 LVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVARLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGR--WGRSCHAPGEVAVAAAEGAAWVTLSPYAASASKPGHGPALPPEAFA-------GHPVPVLALGGVDVTTADAARGAGAHGVAVMGAVMRAADPA 519
            LVLLTDRSQLRLGRGLVRTV ECA AGL  VVVREHDL    R ALVARLA VDGLTVLSSRLP  AAHG+HLAAHQ  P EGR   GRSCH   EV  A AE A++VTLSP+AA+ASKPGHGPALPP  +A       G    VLALGGV  T    A  AGAHGVAVMGAVMRAADPA
Sbjct:    5 LVLLTDRSQLRLGRGLVRTVAECAAAGLTTVVVREHDLGPVAREALVARLARVDGLTVLSSRLPSLAAHGVHLAAHQPAP-EGRPPAGRSCHDVAEVVAAVAERASYVTLSPFAATASKPGHGPALPPATYAAARRATAGSGTRVLALGGVGPTEVGPALAAGAHGVAVMGAVMRAADPA 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56201.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L6AK06_9ACTN5.950e-9593.59Thiamine phosphate synthase n=3 Tax=root TaxID=1 R... [more]
A0A4Q2SE26_9ACTN3.010e-8376.30Thiamine phosphate synthase n=2 Tax=Nocardioides g... [more]
A0A0Q6V956_9ACTN1.180e-8276.88TMP-TENI domain-containing protein n=2 Tax=root Ta... [more]
A0A4Z1CI92_9ACTN2.030e-8175.14Thiamine phosphate synthase n=1 Tax=Nocardioides e... [more]
A0A2T8F7E3_9ACTN5.200e-7068.79Thiamine phosphate synthase n=1 Tax=Nocardioides g... [more]
A0A401Y8I9_9ACTN3.360e-6870.93Putative thiamine-phosphate synthase n=2 Tax=Nocar... [more]
UPI000D75025D3.830e-6870.69thiamine phosphate synthase n=1 Tax=Nocardioides s... [more]
A0A5B1M831_9ACTN5.180e-6769.94Thiamine phosphate synthase n=2 Tax=Nocardioides a... [more]
A0A4U2YH24_9ACTN1.040e-6567.80Thiamine phosphate synthase n=1 Tax=Nocardioides j... [more]
UPI000694FCC33.270e-6571.11thiamine phosphate synthase n=1 Tax=Nocardioides a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56201contigP-wetherbeei_contig56201:1..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog110319.CF8_0798
Preferred namethiE2
PFAMsTMP-TENI
Model size519
Max annot lvl201174|Actinobacteria
KEGG rclassRC00224,RC03255,RC03397
KEGG koko:K00788
KEGG ReactionR03223,R10712
KEGG Pathwayko00730,ko01100,map00730,map01100
KEGG ModuleM00127
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.93e-65
EggNOG OGsCOG0352@1|root,COG0352@2|Bacteria,2IIB5@201174|Actinobacteria,4DR8E@85009|Propionibacteriales
EC2.5.1.3
DescriptionThiamine monophosphate synthase
Cds size519
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.2371395-CDS-P-wetherbeei_contig56201:0..5191683186836.2371395-CDS-P-wetherbeei_contig56201:0..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56201 1..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56201.1.1prot_P-wetherbeei_contig56201.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56201 1..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56201.1.1

>prot_P-wetherbeei_contig56201.1.1 ID=prot_P-wetherbeei_contig56201.1.1|Name=mRNA_P-wetherbeei_contig56201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
PRLVLLTDRSQLRLGRGLVRTVLECADAGLEAVVVREHDLDASRRHALVA
RLAAVDGLTVLSSRLPDPAAHGLHLAAHQRPPGEGRWGRSCHAPGEVAVA
AAEGAAWVTLSPYAASASKPGHGPALPPEAFAGHPVPVLALGGVDVTTAD
AARGAGAHGVAVMGAVMRAADPA
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mRNA from alignment at P-wetherbeei_contig56201:1..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56201.1.1 ID=mRNA_P-wetherbeei_contig56201.1.1|Name=mRNA_P-wetherbeei_contig56201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56201:1..519+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCGGCTCGTCCTGCTGACCGACCGCTCCCAGCTCCGCCTCGGTCGCGG CCTCGTGCGCACCGTCCTGGAGTGCGCCGACGCCGGGCTGGAGGCGGTCG TCGTGCGCGAGCACGACCTCGACGCCTCGCGCCGGCACGCGCTCGTCGCC CGGCTGGCCGCCGTCGACGGGCTCACGGTGCTGTCCTCACGGCTCCCCGA CCCGGCCGCCCACGGCCTGCACCTGGCCGCCCACCAGCGACCTCCGGGCG AGGGTCGCTGGGGACGGTCGTGCCACGCCCCGGGAGAGGTGGCGGTCGCA GCGGCCGAGGGCGCCGCGTGGGTCACCCTCTCGCCGTACGCCGCCAGCGC GAGCAAGCCGGGGCACGGACCCGCCCTGCCACCCGAGGCGTTCGCGGGGC ACCCCGTCCCAGTGCTGGCGCTGGGCGGCGTCGACGTGACCACCGCCGAC GCTGCCCGGGGGGCCGGCGCCCACGGCGTCGCGGTGATGGGCGCGGTGAT GCGGGCTGCCGACCCGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56201:1..519+

>mRNA_P-wetherbeei_contig56201.1.1 ID=mRNA_P-wetherbeei_contig56201.1.1|Name=mRNA_P-wetherbeei_contig56201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56201:1..519+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCGGCTCGTCCTGCTGACCGACCGCTCCCAGCTCCGCCTCGGTCGCGG
CCTCGTGCGCACCGTCCTGGAGTGCGCCGACGCCGGGCTGGAGGCGGTCG
TCGTGCGCGAGCACGACCTCGACGCCTCGCGCCGGCACGCGCTCGTCGCC
CGGCTGGCCGCCGTCGACGGGCTCACGGTGCTGTCCTCACGGCTCCCCGA
CCCGGCCGCCCACGGCCTGCACCTGGCCGCCCACCAGCGACCTCCGGGCG
AGGGTCGCTGGGGACGGTCGTGCCACGCCCCGGGAGAGGTGGCGGTCGCA
GCGGCCGAGGGCGCCGCGTGGGTCACCCTCTCGCCGTACGCCGCCAGCGC
GAGCAAGCCGGGGCACGGACCCGCCCTGCCACCCGAGGCGTTCGCGGGGC
ACCCCGTCCCAGTGCTGGCGCTGGGCGGCGTCGACGTGACCACCGCCGAC
GCTGCCCGGGGGGCCGGCGCCCACGGCGTCGCGGTGATGGGCGCGGTGAT
GCGGGCTGCCGACCCGGCA
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