mRNA_P-wetherbeei_contig5619.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5619.3.1
Unique NamemRNA_P-wetherbeei_contig5619.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: W7U3G1_9STRA (Peptide methionine sulfoxide reductase b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G1_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.380e-73
Identity = 98/129 (75.97%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    1 QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGYRVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKPEGADVAQPCTYEGPVY 387
            +VLRRKATEPR V+ AKGG+DD   KGTY C GC  PLY S+ KFDCGCGWPGFWTNIKD VYE  D DG+R EILC+ CDGHLGHVFRNEGF NPPP+ERHCVNSVS+ F PEG D  QPCTYEGPVY
Sbjct:  123 KVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVY 251          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: A0A836C9K1_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K1_9STRA)

HSP 1 Score: 221 bits (564), Expect = 2.870e-71
Identity = 97/131 (74.05%), Postives = 106/131 (80.92%), Query Frame = 1
Query:    4 VLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGYRVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKP--EGADVAQPCTYEGPVYG 390
            VLR+KATEPR V+ A+GGFDD  + GTY C  CG PLY+SSHKFDCGCGWPGFWTNIKD VYE  DKDG+R EILC+ C GHLGHVFR EGFSNPPPNERHCVNSVSI F P  +G +  Q CTY GPVYG
Sbjct:   91 VLRQKATEPRSVTVARGGFDDHTEDGTYVCGCCGTPLYDSSHKFDCGCGWPGFWTNIKDAVYEERDKDGFRAEILCSSCGGHLGHVFRGEGFSNPPPNERHCVNSVSIGFIPRGKGPEDVQKCTYSGPVYG 221          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: A0A6H5L5V8_9PHAE (MsrB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5V8_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.530e-69
Identity = 99/134 (73.88%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    1 QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGYRVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKPEG---ADVAQPCTYEGPVYGG 393
            QVLR KATEP GV  A GGFDDVFDKGTY CAGC  PLYE SHKFDCGCGWPGFWTNI+D VYE  D DG R EILC+ C GHLGHVFR EGF NP PNERHCVNSVS+AF PEG      A  CTY G V+GG
Sbjct:   91 QVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGRVFGG 224          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: A0A7S2V6B3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6B3_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.650e-67
Identity = 93/133 (69.92%), Postives = 102/133 (76.69%), Query Frame = 1
Query:    1 QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGYRVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKPEGAD---VAQPCTYEGPVYG 390
            +VLR K TEP G + A GGFDD  +KGTY CAGC  PLY S HKFDCGCGWPGFWTNIK  VYE +DKDG+R EI+C+ C  HLGHVFR EGF+NPPPNERHCVNSVSIAF PEG +     Q CTY G VYG
Sbjct:   97 KVLRMKGTEPAGQTVANGGFDDHTEKGTYICAGCSTPLYTSEHKFDCGCGWPGFWTNIKGAVYEKLDKDGFRCEIMCSACGSHLGHVFRGEGFNNPPPNERHCVNSVSIAFLPEGEEDESKVQRCTYNGQVYG 229          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: A0A7J6MIT1_PERCH (Peptide methionine sulfoxide reductase B3 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MIT1_PERCH)

HSP 1 Score: 171 bits (433), Expect = 4.640e-52
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGY-RVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKPEGADVAQPCTYEGPVY 387
            +VLR  ATEPRG++ AKGG+DD F  GTY C  C  PLY+SSHKFDCGCGWPG+WTNI D V E ++ DG  R+EILC+ C  HLGHVFR EG      +ERHCVN  S++FKP G++  +  +Y G V+
Sbjct:   39 KVLREAATEPRGITMAKGGWDDNFADGTYLCGACDTPLYDSSHKFDCGCGWPGYWTNIDDAVAERMETDGSGRIEILCSKCGSHLGHVFRGEGMGYAT-DERHCVNGTSLSFKPRGSEEVKRSSYTGRVF 167          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: A0A7J6P5M7_PEROL (Peptide methionine sulfoxide reductase B3 n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P5M7_PEROL)

HSP 1 Score: 169 bits (427), Expect = 4.860e-51
Identity = 76/130 (58.46%), Postives = 91/130 (70.00%), Query Frame = 1
Query:    1 QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGY-RVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKPEGADVAQPCTYEGPVY 387
            +VLR+ ATEPRGV+ AKGG+DD +  GTY C  C  PLY+SSHKFDCGCGWPG+WTNI   V E  + DG  R EILCA C  HLGHVFR EG   P  +ERHCVN  S++FKP G+   +  +Y G V+
Sbjct:   49 KVLRQAATEPRGVTLAKGGWDDNYADGTYLCGACETPLYDSSHKFDCGCGWPGYWTNIDGAVAERSETDGSGRTEILCAKCGSHLGHVFRGEGMGYPT-DERHCVNGTSLSFKPRGSGEVKRSSYSGRVF 177          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: A0A813KAL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KAL6_POLGL)

HSP 1 Score: 165 bits (417), Expect = 3.440e-49
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGA-----PLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGYRVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKP-EGADVAQPCTYEGPVYG 390
            +VLR+KATEP        GFDD   +G Y CAGC A     PLY S  KFDCGCGWPGFWTN+KD VYE  D DG R E+LC+ CDGH+GHVFR E F +P  +ERHCVNS+S+ F P +G D   P TY G VYG
Sbjct:   71 KVLRQKATEPGHKLTFPKGFDDHKAEGVYACAGCLAAGFEVPLYTSRMKFDCGCGWPGFWTNVKDAVYEKRDADGRRCEVLCSRCDGHMGHVFRGEAFGHPT-DERHCVNSLSLVFLPAKGGDKVAP-TYSGAVYG 204          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: A0A7J6MDC4_PEROL (Peptide methionine sulfoxide reductase B3 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MDC4_PEROL)

HSP 1 Score: 164 bits (416), Expect = 5.490e-49
Identity = 74/127 (58.27%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGY-RVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKPEGADVAQPCTYEG 378
            +VLR+ ATEPRGV+ AKGG+DD +  GTY C  C + LY+SSHKFDCGCGWPG+WTNI   V E  + DG  R EILCA C  HLGHVFR EG   P  +ERHCVN  S++FKP G++  +  +Y G
Sbjct:   38 KVLRQAATEPRGVTLAKGGWDDNYADGTYLCGACESALYDSSHKFDCGCGWPGYWTNIDGAVAERSETDGSGRTEILCAKCGSHLGHVFRGEGMGYPT-DERHCVNGTSLSFKPRGSEEVKRSSYSG 163          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: W6KXY4_9TRYP (MsrB domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KXY4_9TRYP)

HSP 1 Score: 162 bits (410), Expect = 8.030e-49
Identity = 73/116 (62.93%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGYRVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKPEGA 348
            +VLRRKAT+PRG     G +D+ F  G Y CAGCG PLY S+ KF CGCGWPGFW  +   V E  D DG R EILC  C+GHLGHVFR EGF NPPPNERHCVNS SI F P+ +
Sbjct:   41 RVLRRKATDPRG-----GHYDNFFGDGMYVCAGCGTPLYASAMKFACGCGWPGFWDCLPKAVREEPDADGMRTEILCNACNGHLGHVFRGEGFKNPPPNERHCVNSSSIMFIPKNS 151          
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Match: A0A1E1J0L6_LEIGU (MsrB domain-containing protein n=4 Tax=Viannia TaxID=37616 RepID=A0A1E1J0L6_LEIGU)

HSP 1 Score: 159 bits (403), Expect = 7.720e-48
Identity = 70/112 (62.50%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    4 VLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCGWPGFWTNIKDQVYEIVDKDGYRVEILCAHCDGHLGHVFRNEGFSNPPPNERHCVNSVSIAFKP 339
            +LR K T+P G     G +DDVF++G Y CAGC  PLY SS KF CGCGWPGF+  I  +V E  D+DG+RVEI+C  C+GHLGHVFRNEGF NPPPNERHCVN+ SI  +P
Sbjct:   36 ILREKGTDPVG-----GKYDDVFEEGVYVCAGCKTPLYLSSMKFACGCGWPGFYDCIPKRVREQPDRDGHRVEIVCNACNGHLGHVFRNEGFRNPPPNERHCVNNTSIVLQP 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5619.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7U3G1_9STRA1.380e-7375.97Peptide methionine sulfoxide reductase b5 n=2 Tax=... [more]
A0A836C9K1_9STRA2.870e-7174.05Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A6H5L5V8_9PHAE1.530e-6973.88MsrB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2V6B3_9STRA1.650e-6769.92Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7J6MIT1_PERCH4.640e-5257.69Peptide methionine sulfoxide reductase B3 n=1 Tax=... [more]
A0A7J6P5M7_PEROL4.860e-5158.46Peptide methionine sulfoxide reductase B3 n=1 Tax=... [more]
A0A813KAL6_POLGL3.440e-4958.82Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7J6MDC4_PEROL5.490e-4958.27Peptide methionine sulfoxide reductase B3 n=2 Tax=... [more]
W6KXY4_9TRYP8.030e-4962.93MsrB domain-containing protein n=1 Tax=Phytomonas ... [more]
A0A1E1J0L6_LEIGU7.720e-4862.50MsrB domain-containing protein n=4 Tax=Viannia Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5619contigP-wetherbeei_contig5619:2731..3733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G3N8
PFAMsSelR
Model size399
Max annot lvl2759|Eukaryota
KEGG koko:K07305
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.85e-71
EggNOG OGsCOG0229@1|root,KOG0856@2759|Eukaryota
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MrsB
Ec32 orthologEc-00_006660.1
EC1.8.4.12
Descriptionpeptide-methionine (R)-S-oxide reductase activity
Cds size399
COG categoryO
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.8921618-CDS-P-wetherbeei_contig5619:2730..28841683186835.8921618-CDS-P-wetherbeei_contig5619:2730..2884Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5619 2731..2884 -
1683186835.903283-CDS-P-wetherbeei_contig5619:3218..33661683186835.903283-CDS-P-wetherbeei_contig5619:3218..3366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5619 3219..3366 -
1683186835.9112446-CDS-P-wetherbeei_contig5619:3636..37331683186835.9112446-CDS-P-wetherbeei_contig5619:3636..3733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5619 3637..3733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5619.3.1prot_P-wetherbeei_contig5619.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5619 2731..3733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5619.3.1

>prot_P-wetherbeei_contig5619.3.1 ID=prot_P-wetherbeei_contig5619.3.1|Name=mRNA_P-wetherbeei_contig5619.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
QVLRRKATEPRGVSAAKGGFDDVFDKGTYECAGCGAPLYESSHKFDCGCG
WPGFWTNIKDQVYEIVDKDGYRVEILCAHCDGHLGHVFRNEGFSNPPPNE
RHCVNSVSIAFKPEGADVAQPCTYEGPVYGGG*
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mRNA from alignment at P-wetherbeei_contig5619:2731..3733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5619.3.1 ID=mRNA_P-wetherbeei_contig5619.3.1|Name=mRNA_P-wetherbeei_contig5619.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1003bp|location=Sequence derived from alignment at P-wetherbeei_contig5619:2731..3733- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCTGCGGCGGAAAGCCACGGAGCCGCGGGGCGTCAGCGCTGCGAA AGGCGGCTTCGACGACGTGTTTGACAAGGGGACCTACGAATGCGCAGGTT GGATGCCCACCTTTCAACCTTCCGTCTGAAGCTCGGAAAACGGATTATTA CCTTTTGCAGCAGATGCAACAAGTTAACATTCTTCTTCCGGCCTGCACTT CTCAAGCTCCCCAGCATATTGCTGTCTGCTGCACGCCCCATTCCCTTCCT TCGGTTCATTGCTGTTTCTCTCTCTGGCGGCTTCCGCTTCCCCCCTTCCT TCTTGCTCAACGATCTTTGTTGCCACCTTTACCGCTTTGGTGGCGCGGCC GGCGCGGCGCGCGGCAGGGTGCGGGGCGCCGCTATACGAGTCGAGCCACA AGTTTGACTGCGGCTGCGGGTGGCCGGGCTTCTGGACCAACATCAAGGAC CAGGTGTACGAAATCGTCGACAAAGATGGCTACCGCGTCGAGATCCTCTG CGCCCACTGCGACGGGTGCGTGTGTGTTGCCGGGTCTCCGCAAAGAGGTC TGGCCTTTGTTTGCTCGCGCGAGTAGTTGCTGCCGCTGCAGTCGCTGCTG CAAAGGCGTCGCGCCGCCACTGTTGTCGTCGTGCGTGTGCCTGATCCTGA CGTCATTACGGCTGCTGCCAATGCCGCTGGCTTGCGGCCACTGCCTCGCA GCCAGCTACTGGCTTGCTGCTGGCCGAGGCAATGCAACCTCTTCCTCGTT TCCCTTAATGCTCAAAAACGTTTCCTTTGGTTGGCTTCCGTTACGGTGCA CGTCCTTCGCCACTGTGGTATCATCCCCTTTTTTATTTCAACCGTGCAGG CACCTGGGACACGTGTTCCGGAATGAGGGCTTCTCCAACCCGCCGCCGAA CGAGCGTCACTGCGTGAACAGCGTCTCGATTGCTTTCAAGCCGGAGGGCG CCGACGTCGCCCAACCGTGCACGTATGAAGGGCCTGTCTACGGCGGCGGA TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5619:2731..3733-

>mRNA_P-wetherbeei_contig5619.3.1 ID=mRNA_P-wetherbeei_contig5619.3.1|Name=mRNA_P-wetherbeei_contig5619.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig5619:2731..3733- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCTGCGGCGGAAAGCCACGGAGCCGCGGGGCGTCAGCGCTGCGAA
AGGCGGCTTCGACGACGTGTTTGACAAGGGGACCTACGAATGCGCAGGGT
GCGGGGCGCCGCTATACGAGTCGAGCCACAAGTTTGACTGCGGCTGCGGG
TGGCCGGGCTTCTGGACCAACATCAAGGACCAGGTGTACGAAATCGTCGA
CAAAGATGGCTACCGCGTCGAGATCCTCTGCGCCCACTGCGACGGGCACC
TGGGACACGTGTTCCGGAATGAGGGCTTCTCCAACCCGCCGCCGAACGAG
CGTCACTGCGTGAACAGCGTCTCGATTGCTTTCAAGCCGGAGGGCGCCGA
CGTCGCCCAACCGTGCACGTATGAAGGGCCTGTCTACGGCGGCGGATGA
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