mRNA_P-wetherbeei_contig56184.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56184.1.1
Unique NamemRNA_P-wetherbeei_contig56184.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56184.1.1 vs. uniprot
Match: A0A8E3B6X3_RHILI (Uncharacterized protein n=1 Tax=Rhizobium loti TaxID=381 RepID=A0A8E3B6X3_RHILI)

HSP 1 Score: 49.7 bits (117), Expect = 7.890e-5
Identity = 35/101 (34.65%), Postives = 48/101 (47.52%), Query Frame = 1 
Query:    1 GIPCLAANASSLYNPRFQIADFLMWTGVSLDLSVPANRALFHVVVD---LGLGPRNPLVAVAALGTPKYWFQGDEDDFAANKGSAGAVTTVGTISDFTPGP 294
            GI     NA+  Y P+  + DF    G  LDL+ PA  A F V  D   + LG    +    A   P  +F GD   FA NKG+ GA T  G++++ +  P
Sbjct:  166 GIFTAFGNAADGYIPKGDVVDFYFAPGQYLDLTDPAKIAKF-VEADGKPVFLGSDGSIPTGTA---PAIFFSGDASSFATNKGTGGAFTPTGSLTNASTSP 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56184.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8E3B6X3_RHILI7.890e-534.65Uncharacterized protein n=1 Tax=Rhizobium loti Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56184contigP-wetherbeei_contig56184:2..298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.8048453-CDS-P-wetherbeei_contig56184:1..2981683186835.8048453-CDS-P-wetherbeei_contig56184:1..298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56184 2..298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56184.1.1prot_P-wetherbeei_contig56184.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56184 2..298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56184.1.1

>prot_P-wetherbeei_contig56184.1.1 ID=prot_P-wetherbeei_contig56184.1.1|Name=mRNA_P-wetherbeei_contig56184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
GIPCLAANASSLYNPRFQIADFLMWTGVSLDLSVPANRALFHVVVDLGLG
PRNPLVAVAALGTPKYWFQGDEDDFAANKGSAGAVTTVGTISDFTPGP*
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mRNA from alignment at P-wetherbeei_contig56184:2..298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56184.1.1 ID=mRNA_P-wetherbeei_contig56184.1.1|Name=mRNA_P-wetherbeei_contig56184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig56184:2..298+ (Phaeothamnion wetherbeei SAG_119_79)
GGTATCCCGTGTTTGGCTGCAAACGCATCCTCTTTGTATAACCCGCGCTT
TCAAATCGCCGACTTTCTGATGTGGACTGGCGTATCGCTCGACCTTTCGG
TTCCTGCTAATCGCGCGTTGTTTCATGTGGTCGTGGACCTTGGTTTAGGA
CCACGCAATCCACTTGTGGCAGTGGCCGCCCTTGGAACGCCGAAATACTG
GTTTCAGGGCGATGAGGATGATTTTGCTGCAAACAAAGGCAGTGCCGGCG
CCGTTACTACGGTTGGCACCATATCCGACTTTACGCCGGGGCCTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56184:2..298+

>mRNA_P-wetherbeei_contig56184.1.1 ID=mRNA_P-wetherbeei_contig56184.1.1|Name=mRNA_P-wetherbeei_contig56184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig56184:2..298+ (Phaeothamnion wetherbeei SAG_119_79)
GGTATCCCGTGTTTGGCTGCAAACGCATCCTCTTTGTATAACCCGCGCTT
TCAAATCGCCGACTTTCTGATGTGGACTGGCGTATCGCTCGACCTTTCGG
TTCCTGCTAATCGCGCGTTGTTTCATGTGGTCGTGGACCTTGGTTTAGGA
CCACGCAATCCACTTGTGGCAGTGGCCGCCCTTGGAACGCCGAAATACTG
GTTTCAGGGCGATGAGGATGATTTTGCTGCAAACAAAGGCAGTGCCGGCG
CCGTTACTACGGTTGGCACCATATCCGACTTTACGCCGGGGCCTTAA
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