mRNA_P-wetherbeei_contig56183.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56183.1.1
Unique NamemRNA_P-wetherbeei_contig56183.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56183.1.1 vs. uniprot
Match: A0A7S9VSZ2_9SPHN (YaiO family outer membrane beta-barrel protein n=1 Tax=Sphingobium sp. Cam5-1 TaxID=2789327 RepID=A0A7S9VSZ2_9SPHN)

HSP 1 Score: 56.6 bits (135), Expect = 7.400e-7
Identity = 43/95 (45.26%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   37 AQARAALAAQDYAAATLRFEALVARHPGDADYVLGLGQTHLARGDAATAIALLERARGLAPEYLDVLQVLASAYVVAGRRAAAHATYQAAAQLVP 321
            AQARAALA QD+AAA  R E   + +P DA+ +  LG  +        AI+ L RA  LAPE LD+   LA AY+ +G RAAA     A  Q  P
Sbjct:   28 AQARAALARQDFAAAVGRLEQADSANPNDAEILRMLGSAYAFDKRYPQAISTLRRAELLAPEDLDIRAALARAYLWSGDRAAAERELVAMEQRSP 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S9VSZ2_9SPHN7.400e-745.26YaiO family outer membrane beta-barrel protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56183contigP-wetherbeei_contig56183:8..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog246197.MXAN_5659
Model size372
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000164
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1NK0T@1224|Proteobacteria,42X28@68525|delta/epsilon subdivisions,2WT4A@28221|Deltaproteobacteria
DescriptionTetratricopeptide repeat
Cds size372
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.7735178-CDS-P-wetherbeei_contig56183:7..3791683186835.7735178-CDS-P-wetherbeei_contig56183:7..379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56183 8..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56183.1.1prot_P-wetherbeei_contig56183.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56183 8..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56183.1.1

>prot_P-wetherbeei_contig56183.1.1 ID=prot_P-wetherbeei_contig56183.1.1|Name=mRNA_P-wetherbeei_contig56183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
ARAADDAVDDAYAQARAALAAQDYAAATLRFEALVARHPGDADYVLGLGQ
THLARGDAATAIALLERARGLAPEYLDVLQVLASAYVVAGRRAAAHATYQ
AAAQLVPDAQWAQQGLRATLLPAP
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mRNA from alignment at P-wetherbeei_contig56183:8..379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56183.1.1 ID=mRNA_P-wetherbeei_contig56183.1.1|Name=mRNA_P-wetherbeei_contig56183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig56183:8..379+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCGCGCCGCGGACGACGCGGTTGATGATGCGTATGCGCAGGCGCGCGC
CGCGCTCGCGGCGCAGGATTACGCAGCAGCCACACTGCGCTTTGAAGCCT
TGGTCGCCAGGCATCCTGGCGATGCCGATTACGTTCTTGGGCTCGGGCAA
ACCCATCTCGCGCGGGGCGATGCAGCGACCGCGATTGCGCTGCTCGAACG
AGCGCGTGGGCTTGCGCCGGAATACCTTGATGTCTTGCAGGTGCTCGCCT
CGGCCTATGTAGTTGCTGGGCGCCGCGCCGCAGCGCATGCCACCTACCAG
GCTGCCGCGCAACTCGTGCCCGACGCGCAGTGGGCCCAGCAAGGCTTGCG
CGCAACGCTGCTGCCAGCACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56183:8..379+

>mRNA_P-wetherbeei_contig56183.1.1 ID=mRNA_P-wetherbeei_contig56183.1.1|Name=mRNA_P-wetherbeei_contig56183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig56183:8..379+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCGCGCCGCGGACGACGCGGTTGATGATGCGTATGCGCAGGCGCGCGC
CGCGCTCGCGGCGCAGGATTACGCAGCAGCCACACTGCGCTTTGAAGCCT
TGGTCGCCAGGCATCCTGGCGATGCCGATTACGTTCTTGGGCTCGGGCAA
ACCCATCTCGCGCGGGGCGATGCAGCGACCGCGATTGCGCTGCTCGAACG
AGCGCGTGGGCTTGCGCCGGAATACCTTGATGTCTTGCAGGTGCTCGCCT
CGGCCTATGTAGTTGCTGGGCGCCGCGCCGCAGCGCATGCCACCTACCAG
GCTGCCGCGCAACTCGTGCCCGACGCGCAGTGGGCCCAGCAAGGCTTGCG
CGCAACGCTGCTGCCAGCACCG
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