mRNA_P-wetherbeei_contig56175.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56175.1.1
Unique NamemRNA_P-wetherbeei_contig56175.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: A0A6N7H5C2_9HYPH (Extracellular solute-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7H5C2_9HYPH)

HSP 1 Score: 190 bits (482), Expect = 2.210e-56
Identity = 93/174 (53.45%), Postives = 125/174 (71.84%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFD-SFGAPQLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNHTI 519
            V   RANA ET ++I NEAKAGR+  D+FD +     L+ +G +  + P+ AK  P E  DP+G+W A+NL+V+TPGFNT L+P+G EP+T  DLL+P  RG MAW+   + +   GFIG VL EMG+EKG  +LR+L  Q+IA +  +AR+VLDQVIAGEYS+ALQIFN+HT+
Sbjct:   87 VRSTRANASETAVKILNEAKAGRLQADIFDGTTTVVPLKAEGHVLQWLPDAAKDYPAEVKDPQGYWIANNLFVITPGFNTSLIPRGKEPRTLHDLLNPALRGTMAWNGFPTSSGAGGFIGTVLTEMGQEKGTAFLRELGKQKIANLRGSAREVLDQVIAGEYSLALQIFNHHTV 260          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: A0A4Q2IZJ5_9BURK (Extracellular solute-binding protein n=1 Tax=Oxalobacteraceae bacterium CAVE-383 TaxID=2478672 RepID=A0A4Q2IZJ5_9BURK)

HSP 1 Score: 188 bits (477), Expect = 9.350e-56
Identity = 86/174 (49.43%), Postives = 124/174 (71.26%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFD-SFGAPQLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNHTI 519
            V+YVRA++    LR+ NE +AGRV  DVFD + G   L+K  ++  +TP++  RL K+F D  G+WTA+NLYVL+P FNT L+P    PKT  DLL+PKW+GK+ W+++ + +   GF+G+++  MGE+KG DYL+KLA Q +  + ++AR+VL+QVI GE  IAL IFNNH +
Sbjct:   75 VNYVRADSKAVTLRLLNEGRAGRVQADVFDGTAGVAPLKKLNLVEKWTPDSVNRLDKQFIDATGYWTATNLYVLSPAFNTKLIPAAEAPKTLEDLLNPKWKGKITWNASPTMSGSAGFVGMIVTTMGEQKGRDYLQKLADQNLFPLQMSAREVLNQVIRGESQIALNIFNNHAV 248          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: A0A0Q7TZJ9_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TZJ9_9HYPH)

HSP 1 Score: 182 bits (461), Expect = 2.060e-53
Identity = 93/177 (52.54%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFDS----FGAPQLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNHTI 519
            V Y R  AGE  L++QNE +A  V  DVFD+    F A  LE    L  Y PE A   P +  DPKG +TA N++ +  G NT+LV +   PK++ DLLDPKW+GKMAW+++++P   PGFIG +L  MGEEKGM YL KLA Q IA +P + R VLDQVIAG+Y+I L IFNNHT+
Sbjct:   71 VKYSRTPAGEMALKLQNEIRANSVQADVFDANSAFFRAMPLEN---LVEYKPEAAAHYPDDLKDPKGRFTAVNVFTMATGINTNLVAEKDRPKSYEDLLDPKWKGKMAWTTDLTPNGPPGFIGNILVTMGEEKGMAYLEKLAKQDIAKVPASQRVVLDQVIAGQYAIGLMIFNNHTV 244          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: UPI0010BFF6FB (extracellular solute-binding protein n=1 Tax=Rhizobium sp. FY34 TaxID=2562309 RepID=UPI0010BFF6FB)

HSP 1 Score: 180 bits (457), Expect = 7.790e-53
Identity = 86/172 (50.00%), Postives = 114/172 (66.28%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFDSFGA-PQLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNH 513
            V++ R N+G+T L++ NE +AG  + DVFD  G    ++  GM+  Y P++A  L  EF DP G+W A+N+Y LT  +NTDLV     PKT+ DLLDPKW+G+MAW+    P    GF+G VL  MGEEKGM YL+KLAGQ+I  +  + R VLD+ I GE  IAL IFN+H
Sbjct:   68 VEFARGNSGDTALKVINEGQAGNRLGDVFDGTGTYASVKAAGMVAPYVPDSAANLAAEFKDPDGYWHAANIYYLTAAYNTDLVSAEDAPKTYEDLLDPKWKGQMAWAVTPEPTGAAGFVGNVLMSMGEEKGMAYLKKLAGQKITNMSSSQRTVLDRTILGESPIALMIFNHH 239          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: UPI00065E5723 (extracellular solute-binding protein n=1 Tax=Nitratireductor soli TaxID=1670619 RepID=UPI00065E5723)

HSP 1 Score: 177 bits (450), Expect = 9.410e-52
Identity = 92/177 (51.98%), Postives = 115/177 (64.97%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFDS----FGAPQLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNHTI 519
            V Y R  AGE  L++QNE +A  V  D FD     F    L+K   L +Y PE A   P E  D  G + A N+  LT G NTDLVP+   PKT+ DLLDPKW+G+MAW+++++P   PGFIG +L   GEEKGMDYLR+LA Q I  +P + R VLDQVIAGE+SI L IFN+HT+
Sbjct:   72 VHYSRTPAGEMALKLQNEIRANSVQADAFDGNSAFFQVMPLDK---LVAYAPEAATAYPAELKDADGRFHAINVATLTVGVNTDLVPEADRPKTYDDLLDPKWKGRMAWTTDLTPNGPPGFIGNILTVYGEEKGMDYLRRLAAQDIVKVPASQRVVLDQVIAGEHSIGLMIFNHHTV 245          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: A0A1U9YVV3_9HYPH (Putative binding protein component of ABC iron transporter n=1 Tax=Martelella mediterranea DSM 17316 TaxID=1122214 RepID=A0A1U9YVV3_9HYPH)

HSP 1 Score: 176 bits (445), Expect = 4.770e-51
Identity = 90/175 (51.43%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFDSFGA--PQLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNHTI 519
            V + R  AGE  L++QNE +A  V VDVFD+  A    L  D  L SY PE A   P +  DP G + + N++ +T G NT+LV +   PKT+ DLLDPKW+G+MAW+++++P   PGFIG +L  MGEEKGM+YLR LA Q IA IP + R VLDQVI+GEY+I L IFN+H +
Sbjct:   68 VQFSRTPAGELALKVQNEIRANSVQVDVFDANAAFFQVLPLDD-LESYVPEAAAAYPADLKDPDGRYYSVNVFTMTTGINTELVAEDEYPKTYEDLLDPKWKGRMAWTTDLTPNGPPGFIGNILMTMGEEKGMEYLRALAKQDIAKIPASQRVVLDQVISGEYAIGLMIFNHHAV 241          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: A0A1M3PUR5_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 70-18 TaxID=1895826 RepID=A0A1M3PUR5_9PROT)

HSP 1 Score: 174 bits (441), Expect = 2.310e-50
Identity = 86/172 (50.00%), Postives = 111/172 (64.53%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFDSFGAP-QLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNH 513
            V Y RA + +  L+I  EA+AGR+  DVFD       L+  G++  Y  ++AK  P EF DP G WT  N+Y LT G+NTDLV     PKTF DLL+PKW GKMAW+++ + A  PGFI  +L   G+EKGMDYL KLA  +   +P + R VLD+VIAGE+ I L IFN+H
Sbjct:   76 VQYSRAPSTDVALKITTEARAGRIQADVFDGTNTILPLQDAGLVQPYVVDSAKGYPPEFRDPNGLWTTMNVYYLTVGYNTDLVKGADVPKTFDDLLNPKWAGKMAWTTDPTSAGAPGFIQNILALKGQEKGMDYLTKLAALKPVNVPASQRVVLDKVIAGEFPIGLMIFNHH 247          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: A0A2W6TBS7_9HYPH (Uncharacterized protein n=2 Tax=Rhizobiaceae TaxID=82115 RepID=A0A2W6TBS7_9HYPH)

HSP 1 Score: 173 bits (439), Expect = 3.870e-50
Identity = 84/172 (48.84%), Postives = 109/172 (63.37%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFDSFGA-PQLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNH 513
            V++ R N+G+  L++ NE +A   + DVFD  G    +    M+  YTP++A  L  EF DPKG+W A N Y LT  +NTD V     PKT+ DLLDPKW+G+MAW+    P    GF+G +L  MGEEKGMDYLRKLA Q+I  +  + R VLD+ I GE  IAL IFN+H
Sbjct:   68 VEFARGNSGDMALKVINEGQARNRIGDVFDGTGTYSSIRAADMVAPYTPDSAASLAPEFKDPKGYWHAENFYYLTAAYNTDQVTAEEAPKTYEDLLDPKWKGQMAWAVTPEPTGAAGFVGNILMTMGEEKGMDYLRKLAAQKITNMTSSQRTVLDRTILGESPIALMIFNHH 239          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: A0A849TG24_9HYPH (Extracellular solute-binding protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TG24_9HYPH)

HSP 1 Score: 173 bits (438), Expect = 8.510e-50
Identity = 86/171 (50.29%), Postives = 115/171 (67.25%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFDSFGAPQLEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNH 513
            V++ R N+GE  LR+ NEA+AG+   D+ D    P L K   +  Y P+ A +  K+F +  G   +  +YVL PG NT+LV     PKTF DLLDPKW GK+AWS+N     GPGF+ LVL  MG++KGM+YLRKLA Q++A IP A+R VLDQVIAG+Y ++L +FN+H
Sbjct:   89 VNFARYNSGELSLRLVNEAQAGKTQADLVDGSLVP-LYKTDHIAPYQPQVASQYAKQFVEEDGRGVSFLMYVLGPGMNTELVKPTDAPKTFEDLLDPKWAGKIAWSANPGLDGGPGFVALVLLSMGQDKGMEYLRKLAKQKLANIPAASRVVLDQVIAGQYPLSLVVFNHH 258          
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Match: A0A561QAN6_9HYPH (Iron(III) transport system substrate-binding protein n=1 Tax=Neorhizobium alkalisoli TaxID=528178 RepID=A0A561QAN6_9HYPH)

HSP 1 Score: 172 bits (435), Expect = 1.140e-49
Identity = 85/173 (49.13%), Postives = 112/173 (64.74%), Query Frame = 1
Query:    1 VDYVRANAGETILRIQNEAKAGRVMVDVFDSFGAPQ-LEKDGMLTSYTPENAKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWRGKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAARQVLDQVIAGEYSIALQIFNNHT 516
            VD V     E +LRI +E KAG +  DV    GA Q L   G L  + P++A   P +  D  G+WTA  +  L P +NTD+V  G  PKT+ DLLDPKW+G++AW++++S    PGFIG VLG MGEEKGMDYLRKLA Q+I  +P   R V+DQV+ GEY +AL  F++H+
Sbjct:   63 VDAVTGKTSELLLRITDEMKAGALQADVHHGGGAAQELLAKGALEKFIPDSAASFPADLKDTDGYWTAHVVNFLVPAYNTDMVQGGDIPKTYEDLLDPKWKGQIAWAASMSQGGPPGFIGTVLGVMGEEKGMDYLRKLAQQKIVNVPTNQRVVVDQVMQGEYPLALCTFSHHS 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56175.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7H5C2_9HYPH2.210e-5653.45Extracellular solute-binding protein n=1 Tax=Hypho... [more]
A0A4Q2IZJ5_9BURK9.350e-5649.43Extracellular solute-binding protein n=1 Tax=Oxalo... [more]
A0A0Q7TZJ9_9HYPH2.060e-5352.54Uncharacterized protein n=1 Tax=Pseudolabrys sp. R... [more]
UPI0010BFF6FB7.790e-5350.00extracellular solute-binding protein n=1 Tax=Rhizo... [more]
UPI00065E57239.410e-5251.98extracellular solute-binding protein n=1 Tax=Nitra... [more]
A0A1U9YVV3_9HYPH4.770e-5151.43Putative binding protein component of ABC iron tra... [more]
A0A1M3PUR5_9PROT2.310e-5050.00Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A2W6TBS7_9HYPH3.870e-5048.84Uncharacterized protein n=2 Tax=Rhizobiaceae TaxID... [more]
A0A849TG24_9HYPH8.510e-5050.29Extracellular solute-binding protein n=1 Tax=Hypho... [more]
A0A561QAN6_9HYPH1.140e-4949.13Iron(III) transport system substrate-binding prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56175contigP-wetherbeei_contig56175:1..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122214.AQWH01000003_gene3922
PFAMsSBP_bac_6
Model size519
Max annot lvl1224|Proteobacteria
KEGG koko:K02012
KEGG TC3.A.1.10
KEGG Pathwayko02010,map02010
KEGG ModuleM00190
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.82e-52
EggNOG OGsCOG1840@1|root,COG1840@2|Bacteria,1MXZ8@1224|Proteobacteria
DescriptionABC-type Fe3 transport system, periplasmic component
Cds size519
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.6718326-CDS-P-wetherbeei_contig56175:0..5191683186835.6718326-CDS-P-wetherbeei_contig56175:0..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56175 1..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56175.1.1prot_P-wetherbeei_contig56175.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56175 1..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56175.1.1

>prot_P-wetherbeei_contig56175.1.1 ID=prot_P-wetherbeei_contig56175.1.1|Name=mRNA_P-wetherbeei_contig56175.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
VDYVRANAGETILRIQNEAKAGRVMVDVFDSFGAPQLEKDGMLTSYTPEN
AKRLPKEFYDPKGFWTASNLYVLTPGFNTDLVPKGSEPKTFADLLDPKWR
GKMAWSSNVSPASGPGFIGLVLGEMGEEKGMDYLRKLAGQRIAGIPLAAR
QVLDQVIAGEYSIALQIFNNHTI
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mRNA from alignment at P-wetherbeei_contig56175:1..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56175.1.1 ID=mRNA_P-wetherbeei_contig56175.1.1|Name=mRNA_P-wetherbeei_contig56175.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56175:1..519+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGATTACGTCCGCGCCAATGCGGGCGAAACGATCTTGCGTATCCAGAA CGAAGCCAAGGCCGGGCGGGTGATGGTTGACGTGTTCGACAGCTTTGGTG CGCCGCAGCTCGAAAAGGACGGCATGCTGACGAGCTATACGCCCGAGAAC GCCAAGCGCCTGCCGAAGGAATTCTACGATCCGAAAGGTTTCTGGACCGC CTCGAATCTTTATGTGCTGACGCCGGGCTTCAACACCGACCTGGTGCCCA AAGGCAGCGAGCCGAAGACATTCGCCGATCTGCTCGATCCGAAATGGCGC GGCAAAATGGCGTGGAGTTCGAATGTCTCGCCGGCCTCGGGGCCTGGTTT CATCGGCCTCGTACTGGGCGAGATGGGTGAGGAAAAGGGCATGGATTACC TGCGCAAACTGGCGGGCCAGCGCATCGCCGGCATTCCGCTGGCGGCCCGG CAGGTGCTCGATCAGGTGATCGCCGGCGAATATTCCATCGCGCTGCAGAT TTTCAACAATCACACCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56175:1..519+

>mRNA_P-wetherbeei_contig56175.1.1 ID=mRNA_P-wetherbeei_contig56175.1.1|Name=mRNA_P-wetherbeei_contig56175.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig56175:1..519+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGATTACGTCCGCGCCAATGCGGGCGAAACGATCTTGCGTATCCAGAA
CGAAGCCAAGGCCGGGCGGGTGATGGTTGACGTGTTCGACAGCTTTGGTG
CGCCGCAGCTCGAAAAGGACGGCATGCTGACGAGCTATACGCCCGAGAAC
GCCAAGCGCCTGCCGAAGGAATTCTACGATCCGAAAGGTTTCTGGACCGC
CTCGAATCTTTATGTGCTGACGCCGGGCTTCAACACCGACCTGGTGCCCA
AAGGCAGCGAGCCGAAGACATTCGCCGATCTGCTCGATCCGAAATGGCGC
GGCAAAATGGCGTGGAGTTCGAATGTCTCGCCGGCCTCGGGGCCTGGTTT
CATCGGCCTCGTACTGGGCGAGATGGGTGAGGAAAAGGGCATGGATTACC
TGCGCAAACTGGCGGGCCAGCGCATCGCCGGCATTCCGCTGGCGGCCCGG
CAGGTGCTCGATCAGGTGATCGCCGGCGAATATTCCATCGCGCTGCAGAT
TTTCAACAATCACACCATC
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