mRNA_P-wetherbeei_contig5617.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5617.1.1
Unique NamemRNA_P-wetherbeei_contig5617.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5617.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5617contigP-wetherbeei_contig5617:1855..2600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size746
Hectar predicted targeting categoryother localisation
Exons1
Cds size459
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.606089-UTR-P-wetherbeei_contig5617:1854..19371683186835.606089-UTR-P-wetherbeei_contig5617:1854..1937Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5617 1855..1937 +
1683186835.64113-UTR-P-wetherbeei_contig5617:2396..26001683186835.64113-UTR-P-wetherbeei_contig5617:2396..2600Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5617 2397..2600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.6255527-CDS-P-wetherbeei_contig5617:1937..23961683186835.6255527-CDS-P-wetherbeei_contig5617:1937..2396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5617 1938..2396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5617.1.1prot_P-wetherbeei_contig5617.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5617 1938..2396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5617.1.1

>prot_P-wetherbeei_contig5617.1.1 ID=prot_P-wetherbeei_contig5617.1.1|Name=mRNA_P-wetherbeei_contig5617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MRRRELATREFVLPCTCGVVDEPFGLPCCSGNCAPSGCSSAFWRSHWRSQ
RENLQFLSSTHVEHFTQAASNLPNLLPISVTNCATARRLLSVSKRTSVPL
LLLQRNALNPIAFARSRRWSTSGDYATMLFGGEPSAEEKISSMHATDVGE
KA*
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mRNA from alignment at P-wetherbeei_contig5617:1855..2600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5617.1.1 ID=mRNA_P-wetherbeei_contig5617.1.1|Name=mRNA_P-wetherbeei_contig5617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=746bp|location=Sequence derived from alignment at P-wetherbeei_contig5617:1855..2600+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCAGCTCAAGGAGGAAAAAACGGAGAAGACAAGGCAAGGCAATAGAGC
TCCACTGTGATTTTCTGCCGGCGACGTCAATGAATGCGGCGTCGGGAGCT
GGCCACCCGGGAGTTCGTCCTCCCGTGCACCTGCGGGGTGGTTGACGAAC
CTTTCGGACTCCCTTGCTGCTCCGGCAATTGTGCGCCTTCAGGGTGTTCA
TCTGCATTCTGGCGCAGCCACTGGCGCAGCCAGCGAGAGAATTTGCAGTT
TTTGTCGTCTACCCATGTCGAGCACTTCACGCAGGCAGCCTCAAACCTGC
CTAACCTTCTTCCAATCTCAGTCACCAATTGTGCGACGGCGCGACGTCTT
CTCTCAGTAAGCAAGAGAACATCCGTGCCGCTACTACTGCTTCAGAGAAA
TGCTCTCAATCCCATCGCTTTCGCGCGTTCGCGTCGATGGTCAACCTCTG
GCGACTACGCAACTATGCTCTTCGGAGGTGAGCCCAGCGCGGAAGAGAAG
ATTTCTAGTATGCATGCAACAGATGTCGGGGAGAAAGCGTAAATCAGAAT
TGAAGATTGGGAGCCTTTCTCTTCGAAGCGGGAAACGTCTTTCCCGTATG
GTACAGCAGCGTAACAGGCGGTGGAGCTTTACAGAAAGAATCTCTTCAGC
CAAACAATCGATAAAAATCTTTACATTTAAAAGGGCTAGCCAGGAGCCGC
GAATAGAAAAAGTACCTAAATTTGCCAACGAGAGAAAAAATAGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5617:1855..2600+

>mRNA_P-wetherbeei_contig5617.1.1 ID=mRNA_P-wetherbeei_contig5617.1.1|Name=mRNA_P-wetherbeei_contig5617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig5617:1855..2600+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGTCGGGAGCTGGCCACCCGGGAGTTCGTCCTCCCGTGCACCTG
CGGGGTGGTTGACGAACCTTTCGGACTCCCTTGCTGCTCCGGCAATTGTG
CGCCTTCAGGGTGTTCATCTGCATTCTGGCGCAGCCACTGGCGCAGCCAG
CGAGAGAATTTGCAGTTTTTGTCGTCTACCCATGTCGAGCACTTCACGCA
GGCAGCCTCAAACCTGCCTAACCTTCTTCCAATCTCAGTCACCAATTGTG
CGACGGCGCGACGTCTTCTCTCAGTAAGCAAGAGAACATCCGTGCCGCTA
CTACTGCTTCAGAGAAATGCTCTCAATCCCATCGCTTTCGCGCGTTCGCG
TCGATGGTCAACCTCTGGCGACTACGCAACTATGCTCTTCGGAGGTGAGC
CCAGCGCGGAAGAGAAGATTTCTAGTATGCATGCAACAGATGTCGGGGAG
AAAGCGTAA
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