mRNA_P-wetherbeei_contig56167.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56167.1.1
Unique NamemRNA_P-wetherbeei_contig56167.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: UPI0019BB6980 (C-type cytochrome n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019BB6980)

HSP 1 Score: 187 bits (474), Expect = 3.220e-59
Identity = 85/101 (84.16%), Postives = 94/101 (93.07%), Query Frame = 1
Query:   46 ATMLLLNPALAEEELRNPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            A +LL +PA AE+EL+NPFAGD  AA EGKRLFLKTGCY+CHGHEAEGAVGPDLTDDEW+YKPTDAMIFNTIAKGRRGTVM+PFGDQL P+EIW+IVEFLR
Sbjct:   15 ALLLLFHPARAEDELKNPFAGDTVAAVEGKRLFLKTGCYSCHGHEAEGAVGPDLTDDEWVYKPTDAMIFNTIAKGRRGTVMSPFGDQLKPDEIWQIVEFLR 115          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: A0A2E6QLQ5_9PROT (Cytochrome c domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QLQ5_9PROT)

HSP 1 Score: 128 bits (322), Expect = 8.850e-36
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   58 LLNPALAEEELRNPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            +L+ A A +++ NP+ G+A A AEG+RL+  TGCY+CHG  A+GAVGPDLTDDEW+Y+PTDA +F TIAKGR GT M  + + L+ +EIWK++ ++R
Sbjct:   41 ILDTATAADDVHNPYTGNAEAIAEGQRLWAATGCYSCHGELADGAVGPDLTDDEWVYRPTDATLFKTIAKGRSGTNMVGWSESLSDDEIWKVIAYIR 137          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: A0A6N8UV92_9PROT (C-type cytochrome n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6N8UV92_9PROT)

HSP 1 Score: 127 bits (320), Expect = 1.330e-35
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   34 ASLCATMLLLNPALAEEELRNPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            A+L AT      A A ++  NPF GD  A AEGKRL+ +TGCYACHG EA GAVGPDLTDD+W+Y+PTDA IF  IAKGR+GT M  +   L  E+IWK++ ++R
Sbjct:   24 AALAATXXXXXXARAADDA-NPFTGDPDAIAEGKRLWAQTGCYACHGKEAGGAVGPDLTDDQWVYRPTDATIFKAIAKGRKGTNMVGWSSSLTDEQIWKVIAYIR 127          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: A0A0S8D7P7_9PROT (Cytochrome c domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_40 TaxID=1703389 RepID=A0A0S8D7P7_9PROT)

HSP 1 Score: 122 bits (307), Expect = 5.950e-34
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   91 RNPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            +NP+ GD  A  EG++L+ KTGCY+CHG  AEG VGP L DDEWIYKPTD  +F TIA+GRRGTVMA +  +L P++IWK+V ++R
Sbjct:   17 KNPYTGDETAIKEGRKLWRKTGCYSCHGGVAEGGVGPSLIDDEWIYKPTDKTLFKTIAEGRRGTVMAGWSKELDPDQIWKVVAYIR 102          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: A0A2E9E500_9PROT (Cytochrome c domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9E500_9PROT)

HSP 1 Score: 111 bits (278), Expect = 3.920e-29
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   16 VLRWYAASLCATMLLLNPALAEEEL------RNPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            +LR+  A + A  +    +LAEEE       +N   GD AA A GK  +   GCYACHG +AEG VGP L+DD WIYKPTD M++N IA+GR GT M  +   L P +IW++V F+R
Sbjct:   19 LLRYGVAIVLAVSMAQGLSLAEEEELPENWEKNKLNGDVAAIAAGKAHWKNIGCYACHGRKAEGGVGPSLSDDIWIYKPTDKMVYNAIARGRSGTNMVGWSKDLTPRQIWELVAFIR 135          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: A0A836U6I2_9PROT (C-type cytochrome n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A836U6I2_9PROT)

HSP 1 Score: 104 bits (259), Expect = 2.430e-26
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  127 EGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            +GK+L+ KTGCY+CHG  AEG VGP L DD W+YKP D M+F TIAKGR GTVM  +  +L+  EIW+I+ F+R
Sbjct:   55 KGKKLWRKTGCYSCHGGNAEGGVGPSLQDDIWVYKPNDKMLFKTIAKGRSGTVMVAWESELSQTEIWEIIIFIR 128          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: A0A2E4I9I1_9PROT (Cytochrome c domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A2E4I9I1_9PROT)

HSP 1 Score: 104 bits (259), Expect = 2.430e-26
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   94 NPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            NP  G+  A A GK  +   GCYACHG  AEG VGP L+DD W+YKPTD M++N I++GR GT M  +   L PE+IW++V F+R
Sbjct:   44 NPLNGNPDAIASGKAHWKNIGCYACHGRIAEGGVGPSLSDDIWVYKPTDRMVYNAISRGRSGTNMVGWSKDLTPEQIWELVAFIR 128          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: UPI001F35EF86 (cytochrome c n=2 Tax=Noviherbaspirillum pedocola TaxID=2801341 RepID=UPI001F35EF86)

HSP 1 Score: 80.5 bits (197), Expect = 7.580e-17
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   82 EELRNPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            + L+NP+ GD  A A+G++LF    C  CH  +  GA+GP L+D+EWIY      IF TI +GR    M  F   L  E +WK+V ++R
Sbjct:   40 QTLKNPYEGDPVAIAQGRQLFTSMNCAGCHAPQGGGAMGPPLSDNEWIYGGEPGQIFMTIMQGRPNG-MPSFASALPEESVWKLVAYVR 127          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: A0A2R5F3B8_9PROT (Cytochrome C n=1 Tax=Novimethylophilus kurashikiensis TaxID=1825523 RepID=A0A2R5F3B8_9PROT)

HSP 1 Score: 77.8 bits (190), Expect = 1.240e-15
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   82 EELRNPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            ++L+NP+ G+A+AAAEG+ LF    C  CH  +A G +GP L D +WIY      I+ +I +GR    M  F   L P+ +WK+V ++R
Sbjct:   60 DQLKNPYEGNASAAAEGRSLFNAMNCSGCHAKDAGGGMGPPLGDKDWIYGGEPGQIYLSILQGRPNG-MPSFEKALPPDALWKLVTYIR 147          
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Match: A0A2V7GA07_9BACT (Cytochrome C n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7GA07_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 4.080e-15
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   94 NPFAGDAAAAAEGKRLFLKTGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFGDQLAPEEIWKIVEFLR 348
            N + G   A AEG+ L+LK GC ACHG    G +GP LTDD W +  +D +++  I        M   G+QL  +E+WK++ ++R
Sbjct:   22 NKYNGKPDAVAEGRALYLKYGCSACHGVGGGGGMGPPLTDDVWKFGSSDEVLYKLIKGQIPEATMPKVGEQLTDDEVWKVIAYIR 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56167.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019BB69803.220e-5984.16C-type cytochrome n=1 Tax=Prolixibacteraceae bacte... [more]
A0A2E6QLQ5_9PROT8.850e-3655.67Cytochrome c domain-containing protein n=1 Tax=Rho... [more]
A0A6N8UV92_9PROT1.330e-3557.14C-type cytochrome n=1 Tax=Rhodospirillales bacteri... [more]
A0A0S8D7P7_9PROT5.950e-3460.47Cytochrome c domain-containing protein n=1 Tax=Bet... [more]
A0A2E9E500_9PROT3.920e-2947.86Cytochrome c domain-containing protein n=1 Tax=Rho... [more]
A0A836U6I2_9PROT2.430e-2659.46C-type cytochrome n=1 Tax=Alphaproteobacteria bact... [more]
A0A2E4I9I1_9PROT2.430e-2652.94Cytochrome c domain-containing protein n=2 Tax=roo... [more]
UPI001F35EF867.580e-1741.57cytochrome c n=2 Tax=Noviherbaspirillum pedocola T... [more]
A0A2R5F3B8_9PROT1.240e-1540.45Cytochrome C n=1 Tax=Novimethylophilus kurashikien... [more]
A0A2V7GA07_9BACT4.080e-1538.82Cytochrome C n=2 Tax=Candidatus Rokubacteria bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56167contigP-wetherbeei_contig56167:101..448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog861299.J421_4072
PFAMsCytochrome_CBB3,FixP_N
Model size348
Max annot lvl142182|Gemmatimonadetes
KEGG koko:K00406
KEGG TC3.D.4.3
KEGG Pathwayko00190,ko01100,ko02020,map00190,map01100,map02020
KEGG ModuleM00156
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.24e-16
EggNOG OGsCOG2010@1|root,COG2010@2|Bacteria,1ZU6E@142182|Gemmatimonadetes
DescriptionCytochrome C oxidase, cbb3-type, subunit III
Cds size348
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.5521564-CDS-P-wetherbeei_contig56167:100..4481683186835.5521564-CDS-P-wetherbeei_contig56167:100..448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56167 101..448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56167.1.1prot_P-wetherbeei_contig56167.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56167 101..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56167.1.1

>prot_P-wetherbeei_contig56167.1.1 ID=prot_P-wetherbeei_contig56167.1.1|Name=mRNA_P-wetherbeei_contig56167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MPIDSVLRWYAASLCATMLLLNPALAEEELRNPFAGDAAAAAEGKRLFLK
TGCYACHGHEAEGAVGPDLTDDEWIYKPTDAMIFNTIAKGRRGTVMAPFG
DQLAPEEIWKIVEFLR
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mRNA from alignment at P-wetherbeei_contig56167:101..448-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56167.1.1 ID=mRNA_P-wetherbeei_contig56167.1.1|Name=mRNA_P-wetherbeei_contig56167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig56167:101..448- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTATTGATTCCGTTTTGCGGTGGTACGCAGCTTCGCTGTGCGCGAC GATGCTGCTCCTGAATCCTGCATTAGCAGAAGAAGAATTAAGGAATCCGT TTGCTGGGGACGCCGCCGCGGCGGCAGAAGGTAAGCGACTTTTTCTCAAA ACCGGTTGCTATGCCTGTCACGGCCATGAAGCCGAAGGCGCCGTCGGGCC CGATTTGACCGATGACGAGTGGATATACAAACCAACCGATGCGATGATTT TCAATACCATCGCCAAAGGCCGCCGGGGTACGGTAATGGCTCCGTTCGGT GATCAACTCGCGCCGGAGGAAATCTGGAAGATTGTCGAATTTCTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56167:101..448-

>mRNA_P-wetherbeei_contig56167.1.1 ID=mRNA_P-wetherbeei_contig56167.1.1|Name=mRNA_P-wetherbeei_contig56167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig56167:101..448- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTATTGATTCCGTTTTGCGGTGGTACGCAGCTTCGCTGTGCGCGAC
GATGCTGCTCCTGAATCCTGCATTAGCAGAAGAAGAATTAAGGAATCCGT
TTGCTGGGGACGCCGCCGCGGCGGCAGAAGGTAAGCGACTTTTTCTCAAA
ACCGGTTGCTATGCCTGTCACGGCCATGAAGCCGAAGGCGCCGTCGGGCC
CGATTTGACCGATGACGAGTGGATATACAAACCAACCGATGCGATGATTT
TCAATACCATCGCCAAAGGCCGCCGGGGTACGGTAATGGCTCCGTTCGGT
GATCAACTCGCGCCGGAGGAAATCTGGAAGATTGTCGAATTTCTGCGC
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