mRNA_P-wetherbeei_contig56155.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56155.1.1
Unique NamemRNA_P-wetherbeei_contig56155.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56155.1.1 vs. uniprot
Match: A0A8J8CC07_9EURY (FkbM family methyltransferase n=2 Tax=Halomicroarcula salinisoli TaxID=2487746 RepID=A0A8J8CC07_9EURY)

HSP 1 Score: 53.9 bits (128), Expect = 7.990e-7
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    4 IPHVVKIDVEGAEHQVLLGLAKILQHPDCRRIIIEGSADFADGTNQTAKLLTDA--GFTVSALI-RNEDSHHVL 216
            +P V+KIDVEGAE  VL GL++IL  P+CR ++IE   D       T   L +   GF V  L  RN++++H++
Sbjct:  116 VPTVLKIDVEGAEVDVLKGLSQILARPECRLLVIEVHRDLLGQFRATESELYELLDGFNVETLSQRNDENYHLI 189
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BLAST of mRNA_P-wetherbeei_contig56155.1.1 vs. uniprot
Match: A0A2E5QK65_9CHLR (Methyltransf_21 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2E5QK65_9CHLR)

HSP 1 Score: 50.1 bits (118), Expect = 3.100e-5
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    4 IPHVVKIDVEGAEHQVLLGLAKILQHPDCRRIIIEGSADFADGTNQTAKLLTDAGFTVS-ALIRNEDSHHVLENF 225
            IP+V+KIDVEG E +VLLGL K L++P+CR +++E ++  A        L+   GF +  +  R  D+H + + +
Sbjct:  174 IPNVIKIDVEGYEREVLLGLDKTLENPNCRVVMVEFNSLGA------GDLIEKKGFKIIYSSNRGSDTHRIYKKY 242
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BLAST of mRNA_P-wetherbeei_contig56155.1.1 vs. uniprot
Match: A0A6G7YQD8_9SPHN (FkbM family methyltransferase n=1 Tax=Sphingomonas piscis TaxID=2714943 RepID=A0A6G7YQD8_9SPHN)

HSP 1 Score: 49.7 bits (117), Expect = 5.030e-5
Identity = 18/40 (45.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 PIPHVVKIDVEGAEHQVLLGLAKILQHPDCRRIIIEGSAD 120
            P+PH +KIDV+G EH+V+ G+A++L+HP  + +++E + D
Sbjct:  196 PVPHHIKIDVDGLEHRVIRGMAELLRHPQLKTVLVEINYD 235
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8J8CC07_9EURY7.990e-741.89FkbM family methyltransferase n=2 Tax=Halomicroarc... [more]
A0A2E5QK65_9CHLR3.100e-537.33Methyltransf_21 domain-containing protein n=1 Tax=... [more]
A0A6G7YQD8_9SPHN5.030e-545.00FkbM family methyltransferase n=1 Tax=Sphingomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56155contigP-wetherbeei_contig56155:258..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1131269.AQVV01000052_gene652
Model size249
Max annot lvl1131269.AQVV01000052_gene652|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-07
EggNOG OGsCOG4123@1|root,COG4123@2|Bacteria
DescriptionSpecifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
Cds size249
COG categoryAJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.4790125-CDS-P-wetherbeei_contig56155:257..5061683186835.4790125-CDS-P-wetherbeei_contig56155:257..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56155 258..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56155.1.1prot_P-wetherbeei_contig56155.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56155 258..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56155.1.1

>prot_P-wetherbeei_contig56155.1.1 ID=prot_P-wetherbeei_contig56155.1.1|Name=mRNA_P-wetherbeei_contig56155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
PIPHVVKIDVEGAEHQVLLGLAKILQHPDCRRIIIEGSADFADGTNQTAK
LLTDAGFTVSALIRNEDSHHVLENFLADKVVA*
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mRNA from alignment at P-wetherbeei_contig56155:258..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56155.1.1 ID=mRNA_P-wetherbeei_contig56155.1.1|Name=mRNA_P-wetherbeei_contig56155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig56155:258..506- (Phaeothamnion wetherbeei SAG_119_79)
CCCATCCCTCATGTTGTGAAAATCGACGTCGAAGGAGCAGAGCATCAGGT
ACTGCTTGGTCTGGCGAAAATTTTGCAACACCCCGATTGTCGTCGAATTA
TCATCGAAGGATCAGCCGATTTCGCCGACGGCACCAATCAGACAGCCAAA
TTGTTGACCGATGCCGGGTTCACGGTTTCTGCCTTGATCCGCAACGAAGA
TTCCCATCACGTTCTCGAAAATTTCCTAGCCGACAAGGTGGTTGCATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56155:258..506-

>mRNA_P-wetherbeei_contig56155.1.1 ID=mRNA_P-wetherbeei_contig56155.1.1|Name=mRNA_P-wetherbeei_contig56155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig56155:258..506- (Phaeothamnion wetherbeei SAG_119_79)
CCCATCCCTCATGTTGTGAAAATCGACGTCGAAGGAGCAGAGCATCAGGT
ACTGCTTGGTCTGGCGAAAATTTTGCAACACCCCGATTGTCGTCGAATTA
TCATCGAAGGATCAGCCGATTTCGCCGACGGCACCAATCAGACAGCCAAA
TTGTTGACCGATGCCGGGTTCACGGTTTCTGCCTTGATCCGCAACGAAGA
TTCCCATCACGTTCTCGAAAATTTCCTAGCCGACAAGGTGGTTGCATAA
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