mRNA_P-wetherbeei_contig56143.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56143.1.1
Unique NamemRNA_P-wetherbeei_contig56143.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: A0A1P8FI45_9PROT (50S ribosomal protein L16 n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1P8FI45_9PROT)

HSP 1 Score: 206 bits (523), Expect = 1.120e-66
Identity = 101/108 (93.52%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQPARRKYRKEQKGRNKG+ATRGAKVSFGEFGLKA+ RGRLTARQIEAARRAMTRHIKRGGR+WIRIFPDKPIS+KPAEVRMGNGKG+PEY+VAEIVPGKVLYEMDG
Sbjct:    1 MLQPARRKYRKEQKGRNKGIATRGAKVSFGEFGLKAIGRGRLTARQIEAARRAMTRHIKRGGRVWIRIFPDKPISKKPAEVRMGNGKGSPEYFVAEIVPGKVLYEMDG 108
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BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: A0A3N5WPR9_9PROT (50S ribosomal protein L16 n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WPR9_9PROT)

HSP 1 Score: 205 bits (522), Expect = 1.650e-66
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQPARRKYRKEQKGRN GVATRG KVSFGE+GLKA+ RGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEI PGKVLYEMDG
Sbjct:    1 MLQPARRKYRKEQKGRNTGVATRGNKVSFGEYGLKAIGRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDG 108
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BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: C7RJD4_ACCPU (50S ribosomal protein L16 n=17 Tax=Betaproteobacteria TaxID=28216 RepID=C7RJD4_ACCPU)

HSP 1 Score: 204 bits (519), Expect = 4.580e-66
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQPARRKYRKEQKGRN G+ATRGAKVSFGEFGLKA+ RGRLTARQIEAARRAMTRHIKRGGRIWIR+FPDKPIS+KPAEVRMG+GKGNPEYWVAEI PGKVLYEMDG
Sbjct:    1 MLQPARRKYRKEQKGRNTGLATRGAKVSFGEFGLKAIGRGRLTARQIEAARRAMTRHIKRGGRIWIRVFPDKPISKKPAEVRMGSGKGNPEYWVAEIKPGKVLYEMDG 108
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BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: A0A1F4E0H1_9PROT (50S ribosomal protein L16 n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4E0H1_9PROT)

HSP 1 Score: 204 bits (519), Expect = 4.730e-66
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQPARRKYRKEQKGRNKGVATRG KVSFGE+GLKA+ RGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPIS+KPAEVRMGNGKGNPE+WVAEI PGKVLYEMDG
Sbjct:    1 MLQPARRKYRKEQKGRNKGVATRGNKVSFGEYGLKAVGRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEFWVAEIQPGKVLYEMDG 108
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BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: A0A383X5X6_9RHOO (50S ribosomal protein L16 n=3 Tax=Bacteria TaxID=2 RepID=A0A383X5X6_9RHOO)

HSP 1 Score: 203 bits (517), Expect = 9.240e-66
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQPARRKYRKEQKGRNKG+ATRG KVSFGEFGLKA+ RGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPIS+KPAEVRMGNGKGNPEY+VAEI PGKV+YEMDG
Sbjct:    1 MLQPARRKYRKEQKGRNKGIATRGTKVSFGEFGLKAIGRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVIYEMDG 108
[Close]
BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: UPI001AD5D7AB (50S ribosomal protein L16 n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI001AD5D7AB)

HSP 1 Score: 203 bits (517), Expect = 9.240e-66
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQPARRKYRKEQKGRN G+AT GAKVSFGE+GLKA TRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKP+S+KPAEVRMGNGKGNPEYWVAEI PGKVLYEMDG
Sbjct:    1 MLQPARRKYRKEQKGRNTGLATVGAKVSFGEYGLKATTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPVSKKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDG 108
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BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: S9ZQK9_9RHOO (50S ribosomal protein L16 n=12 Tax=Betaproteobacteria TaxID=28216 RepID=S9ZQK9_9RHOO)

HSP 1 Score: 203 bits (516), Expect = 1.400e-65
Identity = 99/108 (91.67%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQP RRKYRKEQKGRN G+ATRGAKVSFGE+GLKA+ RGRLTARQIE+ARRAMTRHIKRGGRIWIRIFPDKPIS+KPAEVRMGNGKGNPEYWVAEI PGKVLYEMDG
Sbjct:    2 MLQPTRRKYRKEQKGRNTGIATRGAKVSFGEYGLKAVGRGRLTARQIESARRAMTRHIKRGGRIWIRIFPDKPISKKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDG 109
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BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: RL16_AZOSB (50S ribosomal protein L16 n=109 Tax=root TaxID=1 RepID=RL16_AZOSB)

HSP 1 Score: 202 bits (514), Expect = 2.650e-65
Identity = 98/108 (90.74%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQP+RRKYRKEQKGRN G+ATRG KVSFG+FGLKA+ RGRLTARQIE+ARRAMTRHIKRGGRIWIRIFPDKPIS+KPAEVRMGNGKGNPEYWVAEI PGKVLYEMDG
Sbjct:    1 MLQPSRRKYRKEQKGRNTGLATRGTKVSFGDFGLKAIARGRLTARQIESARRAMTRHIKRGGRIWIRIFPDKPISKKPAEVRMGNGKGNPEYWVAEIQPGKVLYEMDG 108
[Close]
BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: A0A2I6S434_9RHOO (50S ribosomal protein L16 n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A2I6S434_9RHOO)

HSP 1 Score: 202 bits (514), Expect = 2.650e-65
Identity = 100/108 (92.59%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQP RRKYRKEQKGRN GVATRGAKVSFGEFGLKA TRGRLTARQIE+ARRAMTRHIKRGGRIWIR+FPDKPIS KPAEVRMG GKGNPEYWVAEI PGKVLYEMDG
Sbjct:    1 MLQPKRRKYRKEQKGRNTGVATRGAKVSFGEFGLKATTRGRLTARQIESARRAMTRHIKRGGRIWIRVFPDKPISTKPAEVRMGKGKGNPEYWVAEIQPGKVLYEMDG 108
[Close]
BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Match: A0A2M7MS19_9PROT (50S ribosomal protein L16 n=1 Tax=Hydrogenophilales bacterium CG_4_10_14_3_um_filter_63_21 TaxID=1974028 RepID=A0A2M7MS19_9PROT)

HSP 1 Score: 201 bits (511), Expect = 7.840e-65
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPGKVLYEMDG 324
            MLQPARRKYRKEQKGRN G+ATRGAKVSFGEFGLKA+ RGR+TARQIEAARRAMTRHIKRGGRIWIRIFPDKPIS+KPAEVRMGNGKGNPEY+VAEI PGKVLYEM+G
Sbjct:    1 MLQPARRKYRKEQKGRNTGLATRGAKVSFGEFGLKAIARGRITARQIEAARRAMTRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMEG 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56143.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1P8FI45_9PROT1.120e-6693.5250S ribosomal protein L16 n=3 Tax=Betaproteobacter... [more]
A0A3N5WPR9_9PROT1.650e-6694.4450S ribosomal protein L16 n=1 Tax=Betaproteobacter... [more]
C7RJD4_ACCPU4.580e-6692.5950S ribosomal protein L16 n=17 Tax=Betaproteobacte... [more]
A0A1F4E0H1_9PROT4.730e-6693.5250S ribosomal protein L16 n=4 Tax=unclassified Bet... [more]
A0A383X5X6_9RHOO9.240e-6692.5950S ribosomal protein L16 n=3 Tax=Bacteria TaxID=2... [more]
UPI001AD5D7AB9.240e-6692.5950S ribosomal protein L16 n=1 Tax=Burkholderiales ... [more]
S9ZQK9_9RHOO1.400e-6591.6750S ribosomal protein L16 n=12 Tax=Betaproteobacte... [more]
RL16_AZOSB2.650e-6590.7450S ribosomal protein L16 n=109 Tax=root TaxID=1 R... [more]
A0A2I6S434_9RHOO2.650e-6592.5950S ribosomal protein L16 n=5 Tax=Proteobacteria T... [more]
A0A2M7MS19_9PROT7.840e-6591.6750S ribosomal protein L16 n=1 Tax=Hydrogenophilale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56143contigP-wetherbeei_contig56143:195..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog748247.AZKH_3992
Preferred namerplP
PFAMsRibosomal_L16
Model size324
Max annot lvl206389|Rhodocyclales
KEGG koko:K02878
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.72e-67
EggNOG OGsCOG0197@1|root,COG0197@2|Bacteria,1RA0Z@1224|Proteobacteria,2VQ0A@28216|Betaproteobacteria,2KW4S@206389|Rhodocyclales
DescriptionBinds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Cds size324
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.3581784-CDS-P-wetherbeei_contig56143:194..5181683186835.3581784-CDS-P-wetherbeei_contig56143:194..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56143 195..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56143.1.1prot_P-wetherbeei_contig56143.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56143 195..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56143.1.1

>prot_P-wetherbeei_contig56143.1.1 ID=prot_P-wetherbeei_contig56143.1.1|Name=mRNA_P-wetherbeei_contig56143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MLQPARRKYRKEQKGRNKGVATRGAKVSFGEFGLKALTRGRLTARQIEAA
RRAMTRHIKRGGRIWIRIFPDKPISRKPAEVRMGNGKGNPEYWVAEIVPG
KVLYEMDG
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mRNA from alignment at P-wetherbeei_contig56143:195..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56143.1.1 ID=mRNA_P-wetherbeei_contig56143.1.1|Name=mRNA_P-wetherbeei_contig56143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig56143:195..518+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCAGCCAGCTAGAAGGAAGTACCGCAAAGAACAGAAGGGCCGCAA
CAAAGGCGTCGCCACGCGCGGCGCCAAGGTGAGCTTCGGCGAATTTGGCC
TGAAGGCGCTCACCCGCGGCCGTTTGACGGCACGCCAGATCGAAGCAGCG
CGGCGCGCTATGACGCGCCACATCAAGCGCGGCGGCCGCATCTGGATCCG
CATATTCCCGGACAAGCCGATCTCGCGCAAACCCGCCGAGGTGCGCATGG
GCAACGGCAAGGGCAACCCGGAGTACTGGGTCGCCGAAATCGTGCCGGGC
AAGGTTTTGTATGAAATGGACGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56143:195..518+

>mRNA_P-wetherbeei_contig56143.1.1 ID=mRNA_P-wetherbeei_contig56143.1.1|Name=mRNA_P-wetherbeei_contig56143.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig56143:195..518+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCAGCCAGCTAGAAGGAAGTACCGCAAAGAACAGAAGGGCCGCAA
CAAAGGCGTCGCCACGCGCGGCGCCAAGGTGAGCTTCGGCGAATTTGGCC
TGAAGGCGCTCACCCGCGGCCGTTTGACGGCACGCCAGATCGAAGCAGCG
CGGCGCGCTATGACGCGCCACATCAAGCGCGGCGGCCGCATCTGGATCCG
CATATTCCCGGACAAGCCGATCTCGCGCAAACCCGCCGAGGTGCGCATGG
GCAACGGCAAGGGCAACCCGGAGTACTGGGTCGCCGAAATCGTGCCGGGC
AAGGTTTTGTATGAAATGGACGGG
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