mRNA_P-wetherbeei_contig56094.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56094.1.1
Unique NamemRNA_P-wetherbeei_contig56094.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: A0A525IK79_BRASZ (Oxalyl-CoA decarboxylase n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A525IK79_BRASZ)

HSP 1 Score: 254 bits (648), Expect = 1.180e-79
Identity = 123/130 (94.62%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            IETGKPVLA+EGDSAFGFSGMEVETICRY LPVCIVIFNNDGIYRGTD+NSV SDPAPTVFVKGSRYDKMMEAFGGVGVHAT+PDELKRAVNAAMDSGKPTLINA IDPAAGSESGRIGNLNPQS LKKK
Sbjct:  449 IETGKPVLAVEGDSAFGFSGMEVETICRYKLPVCIVIFNNDGIYRGTDLNSVGSDPAPTVFVKGSRYDKMMEAFGGVGVHATTPDELKRAVNAAMDSGKPTLINAAIDPAAGSESGRIGNLNPQSALKKK 578
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BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: UPI0005574EC0 (thiamine pyrophosphate-dependent enzyme n=2 Tax=Bradyrhizobium liaoningense TaxID=43992 RepID=UPI0005574EC0)

HSP 1 Score: 239 bits (611), Expect = 5.700e-79
Identity = 113/130 (86.92%), Postives = 125/130 (96.15%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            +ETG PVLA+EGDSAFGFSGMEVETICRY+LP+C+VIFNNDGIYRGTDVNS ++DPA TVFVKG+RYDKMMEAFGGVG++ATSPDELKRAVN AM SGKPTL+NAVIDPAAGSESGRIGNLNPQSVL+KK
Sbjct:   57 LETGHPVLAVEGDSAFGFSGMEVETICRYNLPICVVIFNNDGIYRGTDVNSANADPATTVFVKGARYDKMMEAFGGVGINATSPDELKRAVNEAMTSGKPTLVNAVIDPAAGSESGRIGNLNPQSVLQKK 186
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BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: H0TV16_9BRAD (Putative oxalyl-CoA decarboxylase with Thiamin thiamine pyrophosphate (TPP) domain n=2 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TV16_9BRAD)

HSP 1 Score: 247 bits (630), Expect = 1.380e-78
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            +ETGKPVLAIEGDSAFGFSGMEVETICRY+LPVC+VIFNNDGIYRGTDVN+   DPA TVFVKG+RYDKMMEAFGGVGV+ATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK
Sbjct:  301 VETGKPVLAIEGDSAFGFSGMEVETICRYNLPVCVVIFNNDGIYRGTDVNAGGDDPATTVFVKGARYDKMMEAFGGVGVNATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 430
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BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: A0A1M5PH69_9BRAD (Oxalyl-CoA decarboxylase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M5PH69_9BRAD)

HSP 1 Score: 251 bits (640), Expect = 1.750e-78
Identity = 121/130 (93.08%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            +ETGKPVL +EGDSAFGFSGMEVETICRY LP+CIVIFNN+GIYRGTDVNS  SDPAPTVFVKGSRYDKMMEAFGGVGV+ATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK
Sbjct:  447 VETGKPVLCVEGDSAFGFSGMEVETICRYDLPICIVIFNNNGIYRGTDVNSAGSDPAPTVFVKGSRYDKMMEAFGGVGVNATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 576
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BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: A0A537LBL0_9PROT (Oxalyl-CoA decarboxylase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537LBL0_9PROT)

HSP 1 Score: 251 bits (640), Expect = 2.210e-78
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            IETGKPVLA+EGDSAFGFSGMEVETICRY LPVC+VIFNNDGIYRGTDVN+VS DPAPTVFVKGSRYDKMMEAFGGVGV+ATSPDELKRAVNAAMDSG PTLINAVIDPAAGSESGRIGNLNPQS LKKK
Sbjct:  456 IETGKPVLAVEGDSAFGFSGMEVETICRYKLPVCVVIFNNDGIYRGTDVNTVSDDPAPTVFVKGSRYDKMMEAFGGVGVNATSPDELKRAVNAAMDSGLPTLINAVIDPAAGSESGRIGNLNPQSALKKK 585
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BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: A0A537NKB4_9PROT (Oxalyl-CoA decarboxylase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NKB4_9PROT)

HSP 1 Score: 249 bits (635), Expect = 9.750e-78
Identity = 121/130 (93.08%), Postives = 125/130 (96.15%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            IETGKPVLAIEGDSAFGFSGMEVETICRY LPVCIV+FNNDGIYRGTDVN   SDPAPTVFVKG+RYDKMMEAFGGVGV+AT+PDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQS LKKK
Sbjct:  447 IETGKPVLAIEGDSAFGFSGMEVETICRYDLPVCIVVFNNDGIYRGTDVNKAGSDPAPTVFVKGARYDKMMEAFGGVGVNATTPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSQLKKK 576
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BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: A0A1G3IRM7_9PROT (Oxalyl-CoA decarboxylase n=1 Tax=Rhodospirillales bacterium RIFCSPLOWO2_12_FULL_67_15 TaxID=1802023 RepID=A0A1G3IRM7_9PROT)

HSP 1 Score: 248 bits (632), Expect = 2.920e-77
Identity = 118/130 (90.77%), Postives = 125/130 (96.15%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            +ETGKPVLA+ GDSAFGFSGMEVETICRY LPVC+V+FNNDGIYRGTDVN+  SDPA TVFVKG+RYDKMMEAFGGVGVHAT+PDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK
Sbjct:  450 VETGKPVLAVAGDSAFGFSGMEVETICRYKLPVCVVVFNNDGIYRGTDVNTAGSDPATTVFVKGARYDKMMEAFGGVGVHATTPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 579
[Close]
BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: A0A1H1TBU0_9BRAD (Oxalyl-CoA decarboxylase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A1H1TBU0_9BRAD)

HSP 1 Score: 246 bits (628), Expect = 1.150e-76
Identity = 119/130 (91.54%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            IETGKPVL +EGDSAFGFSGMEVETICRY LPVCIVIFNNDGIYRGTDVNS   DPAPTVFVKG+RYDKM+EAFGGVGV+ATSPDELKRAVNAAMDSGKPTLINAV+DPAAGSESGRIGNLNPQSVL KK
Sbjct:  449 IETGKPVLCVEGDSAFGFSGMEVETICRYRLPVCIVIFNNDGIYRGTDVNSAGDDPAPTVFVKGARYDKMIEAFGGVGVNATSPDELKRAVNAAMDSGKPTLINAVLDPAAGSESGRIGNLNPQSVLSKK 578
[Close]
BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: A0A537RG20_9PROT (Oxalyl-CoA decarboxylase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A537RG20_9PROT)

HSP 1 Score: 244 bits (624), Expect = 4.330e-76
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            IETGKPVLAIEGDSAFGFSGMEVETICRY LPVC+VIFNNDGIYRGTDVN   +DPA TVFVKGSRYDKM+EAFGG+G++ATSPDELKRAVN AMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK
Sbjct:  448 IETGKPVLAIEGDSAFGFSGMEVETICRYRLPVCVVIFNNDGIYRGTDVNKAGADPATTVFVKGSRYDKMIEAFGGIGINATSPDELKRAVNQAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 577
[Close]
BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Match: A0A1Y6KES6_9BRAD (Oxalyl-CoA decarboxylase n=13 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1Y6KES6_9BRAD)

HSP 1 Score: 244 bits (623), Expect = 5.960e-76
Identity = 119/130 (91.54%), Postives = 124/130 (95.38%), Query Frame = 1 
Query:    1 IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVNSVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLKKK 390
            +ETGKPVLAIEGDSAFGFSGMEVETICRY+LPVC+VIFNNDGIYRGTD NS  SDPA TVFVKG+RYDKMMEAFGGVGV+ATSPDELKRAVN AMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVL KK
Sbjct:  446 VETGKPVLAIEGDSAFGFSGMEVETICRYNLPVCVVIFNNDGIYRGTDQNSAGSDPATTVFVKGARYDKMMEAFGGVGVNATSPDELKRAVNEAMDSGKPTLINAVIDPAAGSESGRIGNLNPQSVLTKK 575
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56094.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A525IK79_BRASZ1.180e-7994.62Oxalyl-CoA decarboxylase n=3 Tax=Bradyrhizobium Ta... [more]
UPI0005574EC05.700e-7986.92thiamine pyrophosphate-dependent enzyme n=2 Tax=Br... [more]
H0TV16_9BRAD1.380e-7892.31Putative oxalyl-CoA decarboxylase with Thiamin thi... [more]
A0A1M5PH69_9BRAD1.750e-7893.08Oxalyl-CoA decarboxylase n=2 Tax=Bradyrhizobium Ta... [more]
A0A537LBL0_9PROT2.210e-7893.85Oxalyl-CoA decarboxylase n=1 Tax=Alphaproteobacter... [more]
A0A537NKB4_9PROT9.750e-7893.08Oxalyl-CoA decarboxylase n=1 Tax=Alphaproteobacter... [more]
A0A1G3IRM7_9PROT2.920e-7790.77Oxalyl-CoA decarboxylase n=1 Tax=Rhodospirillales ... [more]
A0A1H1TBU0_9BRAD1.150e-7691.54Oxalyl-CoA decarboxylase n=2 Tax=Bradyrhizobium Ta... [more]
A0A537RG20_9PROT4.330e-7690.77Oxalyl-CoA decarboxylase n=2 Tax=Alphaproteobacter... [more]
A0A1Y6KES6_9BRAD5.960e-7691.54Oxalyl-CoA decarboxylase n=13 Tax=Bradyrhizobiacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56094contigP-wetherbeei_contig56094:1..393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380355.JNIJ01000009_gene1657
Preferred nameoxc
PFAMsTPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
Model size393
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00027,RC00106,RC00620,RC01192,RC02744,RC02893
KEGG koko:K01577,ko:K01652
KEGG ReactionR00006,R00014,R00226,R01908,R03050,R04672,R04673,R08648
KEGG Pathwayko00290,ko00630,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00630,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-79
EggNOG OGsCOG0028@1|root,COG0028@2|Bacteria,1MXDW@1224|Proteobacteria,2TT9X@28211|Alphaproteobacteria,3JRKI@41294|Bradyrhizobiaceae
EC2.2.1.6,4.1.1.8
DescriptionBelongs to the TPP enzyme family
Cds size393
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.705335-CDS-P-wetherbeei_contig56094:0..3931683186834.705335-CDS-P-wetherbeei_contig56094:0..393Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56094 1..393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56094.1.1prot_P-wetherbeei_contig56094.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56094 1..393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56094.1.1

>prot_P-wetherbeei_contig56094.1.1 ID=prot_P-wetherbeei_contig56094.1.1|Name=mRNA_P-wetherbeei_contig56094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
IETGKPVLAIEGDSAFGFSGMEVETICRYSLPVCIVIFNNDGIYRGTDVN
SVSSDPAPTVFVKGSRYDKMMEAFGGVGVHATSPDELKRAVNAAMDSGKP
TLINAVIDPAAGSESGRIGNLNPQSVLKKK*
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mRNA from alignment at P-wetherbeei_contig56094:1..393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56094.1.1 ID=mRNA_P-wetherbeei_contig56094.1.1|Name=mRNA_P-wetherbeei_contig56094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig56094:1..393+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAAACCGGCAAGCCGGTGCTCGCGATCGAAGGCGACTCGGCCTTTGG
TTTCTCCGGTATGGAGGTCGAGACGATCTGCCGCTACAGTCTGCCGGTCT
GCATCGTGATCTTCAACAATGACGGCATCTATCGCGGCACCGACGTCAAT
TCGGTGAGCTCCGATCCGGCGCCGACGGTGTTCGTCAAGGGCTCGCGCTA
TGACAAGATGATGGAAGCGTTCGGCGGTGTCGGCGTCCATGCGACCTCGC
CGGACGAGTTGAAGCGCGCCGTCAACGCCGCTATGGATTCCGGCAAACCG
ACGCTGATCAACGCGGTAATCGATCCGGCGGCCGGCTCCGAAAGCGGCCG
CATCGGCAACCTCAATCCGCAGAGTGTGCTGAAGAAGAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56094:1..393+

>mRNA_P-wetherbeei_contig56094.1.1 ID=mRNA_P-wetherbeei_contig56094.1.1|Name=mRNA_P-wetherbeei_contig56094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig56094:1..393+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAAACCGGCAAGCCGGTGCTCGCGATCGAAGGCGACTCGGCCTTTGG
TTTCTCCGGTATGGAGGTCGAGACGATCTGCCGCTACAGTCTGCCGGTCT
GCATCGTGATCTTCAACAATGACGGCATCTATCGCGGCACCGACGTCAAT
TCGGTGAGCTCCGATCCGGCGCCGACGGTGTTCGTCAAGGGCTCGCGCTA
TGACAAGATGATGGAAGCGTTCGGCGGTGTCGGCGTCCATGCGACCTCGC
CGGACGAGTTGAAGCGCGCCGTCAACGCCGCTATGGATTCCGGCAAACCG
ACGCTGATCAACGCGGTAATCGATCCGGCGGCCGGCTCCGAAAGCGGCCG
CATCGGCAACCTCAATCCGCAGAGTGTGCTGAAGAAGAAATGA
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