mRNA_P-wetherbeei_contig56058.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56058.1.1
Unique NamemRNA_P-wetherbeei_contig56058.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: A0A7C9KMP9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9KMP9_9PROT)

HSP 1 Score: 213 bits (541), Expect = 4.660e-66
Identity = 105/172 (61.05%), Postives = 125/172 (72.67%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLADHMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAILGQSVF 516
            GYNRCF PNV E+R+RLK+GALG+LLH EG+FC +RYG +  G+WKAD A  PAG+LADHMLYL IETLG I   H   ++  S N LAD  AVLL+ ANN + LLTA G+TPDYYRF +FGT+GW E+RDA    FQP  G REE+ L  +D ER +VEAFA AI G   F
Sbjct:   99 GYNRCFFPNVIELRRRLKAGALGQLLHTEGDFCVHRYGSVKRGSWKADPANAPAGALADHMLYLTIETLGRIEAAHAIGLNQASDNDLADTTAVLLKCANNATALLTACGMTPDYYRFTVFGTEGWAEVRDADTFIFQPRKGPREEMRLDQVDAERNEVEAFADAIAGTHPF 270          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: A0A523G1K3_9PROT (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523G1K3_9PROT)

HSP 1 Score: 167 bits (423), Expect = 4.940e-48
Identity = 88/172 (51.16%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLADHMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAILGQSVF 516
            GYNRCF+P   E+R  + SGALG  LHAEGNFC +R+G +  G WKAD    P G+L DHMLY +I   GP+AEVH  +       TL D  A LLR AN  SG LTAIG T D  R Q+FGT GW E+R    LT     GE E    P  + ERAQ+E FA AI G++ F
Sbjct:  120 GYNRCFLPANGELRALVASGALGTPLHAEGNFCVDRFGQVAPGGWKADNRQTPPGALTDHMLYEMIRMFGPVAEVHAIAGDRAGLATLKDTTATLLRFANGMSGALTAIGTTADLLRLQVFGTLGWAEVRGMDVLTTAYTQGEGESKTFPRFEAERAQLEGFADAIEGKAAF 291          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: A0A6N7FFT0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FFT0_9PROT)

HSP 1 Score: 151 bits (381), Expect = 9.200e-42
Identity = 76/172 (44.19%), Postives = 103/172 (59.88%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLADHMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAILGQSVF 516
            GY+RCF+P    +R+R++ G LG ++HAE NFC  RY G+   ++K  +   P GSLADHM Y +IE LGP++EV    +H  ++    D     LR A+  SG LT IGVT D++R  +FGTKGW E+R A    F PV GE + + LP  +  R   EAFA A  G + F
Sbjct:  120 GYDRCFLPAADALRRRVRDGDLGEIVHAEANFCVPRYFGMTKDDFKGHVDNAPPGSLADHMFYTMIELLGPVSEVEVHGLHQATEFETPDTVTARLRFADGPSGSLTTIGVTGDFHRLHMFGTKGWAEIRGAAGFEFSPVGGEGDSVNLPPGEVLRRMQEAFAAAATGGAPF 291          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: A0A6N7GA25_9ACTN (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Micromonosporaceae bacterium TaxID=1873464 RepID=A0A6N7GA25_9ACTN)

HSP 1 Score: 149 bits (376), Expect = 5.130e-41
Identity = 80/172 (46.51%), Postives = 109/172 (63.37%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLADHMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAILGQSVF 516
            GYNR F PN AE+R+R+++G +G LLHAEG+FCT+R+  L   +W  + A++ AG+LADH LY +IE LG +  V   +    +   + D  AVLLR  +  SGLLTA G T  Y R   FG+ GW+E R  R L+++   GE E   LP LD ERAQ+E FA A+ G++ F
Sbjct:  120 GYNRYFYPNAAELRRRVRAGEVGELLHAEGDFCTDRFHTLPPDHWALEDAHLLAGALADHPLYSMIELLGRVRSVDARAGSRGTGRAIIDTTAVLLRFESGVSGLLTAAGATAPYERLTYFGSLGWVETR-GRTLSYRYRSGEEETAALPELDAERAQLECFAAAVRGRATF 290          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: A0A1Z9SLF8_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TMED256 TaxID=1986865 RepID=A0A1Z9SLF8_9PROT)

HSP 1 Score: 119 bits (299), Expect = 1.430e-29
Identity = 65/169 (38.46%), Postives = 98/169 (57.99%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLAD---HMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAI 498
            G+NR F+P + EM++R++ G +G+++HA+ NF  N     G  +W+ ++   PAG+++    HML LLI   G I  V+  S    +   + D  ++  R  +  S   T +G T    R QIFGT+GW+ELRD   L FQP+DG  E +  P  D ERA++EAFA A+
Sbjct:  120 GHNRRFLPPILEMKRRIERGDIGKVIHADANFSGNPSLRHGNEHWRTNIDETPAGAMSPIGIHMLDLLICLCGRINTVNAQSFRLATDLPIDDTTSMTFRFESGMSACFTTLGATARTMRLQIFGTEGWLELRDESPLVFQPMDGPSETIDYPLFDKERAELEAFADAV 288          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: D5RPC4_9PROT (Oxidoreductase, NAD-binding domain protein n=3 Tax=Roseomonas TaxID=125216 RepID=D5RPC4_9PROT)

HSP 1 Score: 118 bits (295), Expect = 5.730e-29
Identity = 65/171 (38.01%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLAD---HMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAILG 504
            G+NR F+P VAE+++ L  G +G LLH EG+F         AG W+AD +  P G +     HM+ +++   GPIAEV  +S   V  N L D  A+L R A+  +G    +   P  +R  ++G++GW EL D   L  +P +GE      P +D ERA++EAFA A+ G
Sbjct:  122 GHNRRFLPAVAELKEMLGDGRIGTLLHVEGHFSGPGAAAYKAGMWRADRSESPLGGMGGMGIHMIDMMVNLAGPIAEVSVASTARVLTNGLDDTTAMLCRFASGATGTFATLAYAPRCWRVALYGSEGWAELTDHEHLVHRPREGETVVRDFPKVDIERAELEAFAAAVAG 292          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: A0A845B3T4_9PROT (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Roseomonas coralli TaxID=2545983 RepID=A0A845B3T4_9PROT)

HSP 1 Score: 117 bits (292), Expect = 1.580e-28
Identity = 65/171 (38.01%), Postives = 94/171 (54.97%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLAD---HMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAILG 504
            G+NR F+P VAE++  L  G +G LLH EG+F      G   G W+AD +  P G +     HM+ ++I   GPIAEV   S   V +N L D  A+L R A+  +G    +   P  +R  ++G++GW+EL D   + F+P +GE      P  D ERA++ AFA A+ G
Sbjct:  121 GHNRRFLPAVAEIKAMLADGRIGTLLHVEGHFSGPGAAGYKPGMWRADRSESPLGGMGGMGIHMIDMMINLAGPIAEVTVQSTARVLENGLDDTTAMLCRFASGATGTFATLAYAPRCWRVALYGSEGWVELTDHEHMVFRPREGEGFVRDYPKTDIERAELAAFAAAVAG 291          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: A0A1V2H718_9PROT (Oxidoreductase n=2 Tax=Roseomonas TaxID=125216 RepID=A0A1V2H718_9PROT)

HSP 1 Score: 116 bits (290), Expect = 3.100e-28
Identity = 64/175 (36.57%), Postives = 95/175 (54.29%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLAD---HMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAILGQSVF 516
            G+NR F+P VAE++  L  G +G LLH EG+F          G W+AD +  P G +     HM+ +++   GPIAEV  +S   V  N L D  A+L R A   +G    +   P  +R  ++G++GW EL D   L ++P +GE      P +D ERA++EAFA A+ G + +
Sbjct:  122 GHNRRFLPAVAELKAMLADGRIGTLLHVEGHFSGPGAAAYKPGMWRADRSESPLGGMGGMGIHMIDMMVNLAGPIAEVAVTSTARVLTNGLDDTTAMLCRFACGATGTFATLAYAPRCWRVALYGSEGWAELTDHEHLVYRPREGETVVRDFPKVDIERAELEAFASAVAGGATY 296          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: A0A2E5PQ32_9PROT (Oxidoreductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PQ32_9PROT)

HSP 1 Score: 115 bits (287), Expect = 8.230e-28
Identity = 70/171 (40.94%), Postives = 97/171 (56.73%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLG--AGNWKADLAYVPAGSLAD---HMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAI 498
            G+NR FMP+  E+++R+ SG+LG +LHAE NF  +  GGL    G W+AD    PAG +     HM+  LI   G I+EVH  S+       + D  ++LLR  N  +G L     T      ++FG+KG  E+R  R   F+PV+GE E +   A D ERA++EAFA AI
Sbjct:  120 GHNRRFMPSWTELKRRIDSGSLGTILHAETNFSGS--GGLQYRPGGWRADRVESPAGGMGGMGIHMIDTLIGLFGRISEVHCVSIRRAIVIDVDDTTSMLLRFENGMTGYLGTFNATVHTQTVRVFGSKGSAEIRQERNFEFRPVEGEAEAIDFGAFDKERAELEAFAAAI 288          
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Match: UPI001C2CB5F5 (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Siccirubricoccus sp. G192 TaxID=2849651 RepID=UPI001C2CB5F5)

HSP 1 Score: 114 bits (285), Expect = 1.620e-27
Identity = 68/171 (39.77%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    1 GYNRCFMPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGSLAD---HMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLLTAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPERAQVEAFAGAILG 504
            G+NR F+P V EMR+ L  GALG +LHAEG            G W+AD    P G +     HM+ +LI  +GPIAEV  SS   VS + + D  A+L R A+  +G    + + P Y+R  +FGTKG +E++   +L F P++GE      P  D E A+++AFA A  G
Sbjct:  121 GHNRRFLPAVIEMRRLLAEGALGTVLHAEGQMSGPAAAAWREGMWRADREESPLGGMGGMGIHMVDMLIHLMGPIAEVTVSSFPRVSAH-VDDTTAMLARFASGATGTFATLSLAPRYWRVALFGTKGLLEMQGQERLGFAPIEGEAWTRDFPKTDIEHAELQAFAVAAAG 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56058.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C9KMP9_9PROT4.660e-6661.05Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A523G1K3_9PROT4.940e-4851.16Gfo/Idh/MocA family oxidoreductase n=1 Tax=Alphapr... [more]
A0A6N7FFT0_9PROT9.200e-4244.19Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A6N7GA25_9ACTN5.130e-4146.51Gfo/Idh/MocA family oxidoreductase n=1 Tax=Micromo... [more]
A0A1Z9SLF8_9PROT1.430e-2938.46Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
D5RPC4_9PROT5.730e-2938.01Oxidoreductase, NAD-binding domain protein n=3 Tax... [more]
A0A845B3T4_9PROT1.580e-2838.01Gfo/Idh/MocA family oxidoreductase n=1 Tax=Roseomo... [more]
A0A1V2H718_9PROT3.100e-2836.57Oxidoreductase n=2 Tax=Roseomonas TaxID=125216 Rep... [more]
A0A2E5PQ32_9PROT8.230e-2840.94Oxidoreductase n=1 Tax=Rhodospirillaceae bacterium... [more]
UPI001C2CB5F51.620e-2739.77Gfo/Idh/MocA family oxidoreductase n=1 Tax=Sicciru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56058contigP-wetherbeei_contig56058:3..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1082931.KKY_2537
Preferred namebplA
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Model size516
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.44e-25
EggNOG OGsCOG0673@1|root,COG0673@2|Bacteria,1R4SZ@1224|Proteobacteria,2TRR2@28211|Alphaproteobacteria,3N8YQ@45401|Hyphomicrobiaceae
DescriptionOxidoreductase family, C-terminal alpha/beta domain
Cds size498
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.3481266-CDS-P-wetherbeei_contig56058:2..5001683186834.3481266-CDS-P-wetherbeei_contig56058:2..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56058 3..500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.366733-UTR-P-wetherbeei_contig56058:500..5181683186834.366733-UTR-P-wetherbeei_contig56058:500..518Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56058 501..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56058.1.1prot_P-wetherbeei_contig56058.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56058 3..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56058.1.1

>prot_P-wetherbeei_contig56058.1.1 ID=prot_P-wetherbeei_contig56058.1.1|Name=mRNA_P-wetherbeei_contig56058.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MPNVAEMRKRLKSGALGRLLHAEGNFCTNRYGGLGAGNWKADLAYVPAGS
LADHMLYLLIETLGPIAEVHTSSVHDVSQNTLADCAAVLLRTANNTSGLL
TAIGVTPDYYRFQIFGTKGWMELRDARQLTFQPVDGEREELMLPALDPER
AQVEAFAGAILGQSVF
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mRNA from alignment at P-wetherbeei_contig56058:3..518-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56058.1.1 ID=mRNA_P-wetherbeei_contig56058.1.1|Name=mRNA_P-wetherbeei_contig56058.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig56058:3..518- (Phaeothamnion wetherbeei SAG_119_79)
GGTTACAATCGCTGCTTCATGCCGAACGTGGCGGAGATGCGCAAACGGCT GAAATCGGGCGCTCTCGGCCGGCTGCTGCACGCGGAGGGGAACTTCTGCA CGAACAGGTACGGCGGTCTCGGCGCCGGAAACTGGAAAGCCGATCTGGCG TACGTGCCCGCCGGCAGCCTCGCCGATCACATGCTGTACCTGCTGATCGA GACGCTCGGGCCGATCGCGGAGGTGCACACATCGAGCGTCCACGACGTAT CGCAGAACACGTTGGCGGATTGTGCCGCGGTGCTGCTGCGTACGGCGAAC AATACCAGCGGCCTCCTGACGGCGATCGGCGTCACGCCCGACTACTATCG CTTCCAGATCTTCGGCACGAAAGGCTGGATGGAACTGCGCGATGCGCGTC AGTTGACATTTCAACCCGTCGATGGCGAGCGCGAAGAATTGATGCTGCCT GCGCTCGATCCCGAGCGGGCGCAGGTGGAGGCCTTCGCGGGCGCGATCCT GGGCCAAAGCGTGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56058:3..518-

>mRNA_P-wetherbeei_contig56058.1.1 ID=mRNA_P-wetherbeei_contig56058.1.1|Name=mRNA_P-wetherbeei_contig56058.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig56058:3..518- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAACGTGGCGGAGATGCGCAAACGGCTGAAATCGGGCGCTCTCGG
CCGGCTGCTGCACGCGGAGGGGAACTTCTGCACGAACAGGTACGGCGGTC
TCGGCGCCGGAAACTGGAAAGCCGATCTGGCGTACGTGCCCGCCGGCAGC
CTCGCCGATCACATGCTGTACCTGCTGATCGAGACGCTCGGGCCGATCGC
GGAGGTGCACACATCGAGCGTCCACGACGTATCGCAGAACACGTTGGCGG
ATTGTGCCGCGGTGCTGCTGCGTACGGCGAACAATACCAGCGGCCTCCTG
ACGGCGATCGGCGTCACGCCCGACTACTATCGCTTCCAGATCTTCGGCAC
GAAAGGCTGGATGGAACTGCGCGATGCGCGTCAGTTGACATTTCAACCCG
TCGATGGCGAGCGCGAAGAATTGATGCTGCCTGCGCTCGATCCCGAGCGG
GCGCAGGTGGAGGCCTTCGCGGGCGCGATCCTGGGCCAAAGCGTGTTC
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