mRNA_P-wetherbeei_contig5604.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5604.1.1
Unique NamemRNA_P-wetherbeei_contig5604.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5604.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5604contigP-wetherbeei_contig5604:691..1918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size889
Hectar predicted targeting categorysignal peptide
Exons2
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.045908-UTR-P-wetherbeei_contig5604:690..10661683186834.045908-UTR-P-wetherbeei_contig5604:690..1066Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5604 691..1066 -
1683186834.0645394-UTR-P-wetherbeei_contig5604:1405..14101683186834.0645394-UTR-P-wetherbeei_contig5604:1405..1410Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5604 1406..1410 -
1683186834.0898492-UTR-P-wetherbeei_contig5604:1917..19181683186834.0898492-UTR-P-wetherbeei_contig5604:1917..1918Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5604 1918..1918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.0797417-CDS-P-wetherbeei_contig5604:1410..19171683186834.0797417-CDS-P-wetherbeei_contig5604:1410..1917Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5604 1411..1917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5604.1.1prot_P-wetherbeei_contig5604.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5604 1411..1917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5604.1.1

>prot_P-wetherbeei_contig5604.1.1 ID=prot_P-wetherbeei_contig5604.1.1|Name=mRNA_P-wetherbeei_contig5604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MQCFFSLYLGFTWSVASSTTSLTTIVKLGQRHFTCIFTKNGEIGKVSFRW
PGGRRLSIGGHRFHHNAGLWRPGERFKAPLQASYMSPAWLCPSFTYGNIL
CRTLVRVVGWRCLAVCRLCDATTSEMLVGRSELHQLQDGGPFGSKLLAAS
KARKSSTAAGVVLRNAGP*
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mRNA from alignment at P-wetherbeei_contig5604:691..1918-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5604.1.1 ID=mRNA_P-wetherbeei_contig5604.1.1|Name=mRNA_P-wetherbeei_contig5604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1228bp|location=Sequence derived from alignment at P-wetherbeei_contig5604:691..1918- (Phaeothamnion wetherbeei SAG_119_79)
GATGCAGTGTTTCTTTTCACTGTACTTAGGTTTTACCTGGAGTGTCGCGT
CGTCTACCACTAGTCTTACGACCATTGTAAAGCTCGGTCAGCGACATTTC
ACGTGCATATTTACCAAGAACGGAGAGATTGGGAAAGTATCTTTCCGCTG
GCCAGGAGGCCGCCGTTTGTCAATAGGAGGTCATCGGTTTCACCACAACG
CTGGCCTATGGAGACCGGGTGAACGATTCAAAGCCCCTTTGCAAGCCTCA
TACATGAGTCCTGCTTGGCTTTGTCCATCATTCACTTATGGCAATATTTT
GTGTCGCACTTTGGTGCGGGTGGTTGGTTGGCGTTGTCTGGCTGTGTGTC
GTCTGTGCGATGCCACCACTAGCGAGATGTTGGTTGGTCGTTCTGAACTA
CATCAACTGCAGGACGGCGGCCCTTTTGGAAGCAAATTACTTGCTGCAAG
CAAGGCGCGAAAATCCAGCACCGCTGCTGGTGTGGTGCTACGAAACGCGG
GGCCTTGAGGAAGGTAAAGGAAAGTTTTCTATTTGCCTCGGCCGTTATCA
TTGCAGCTGGTGGGAGTCATTTCTGCTTCAACTTGCCGCACCTTCGCGAT
CAGCCATGGCTTTACATTGCTCAGGTCTCTTAAAATCTCGACTTTTCCTC
ACTGCTGCTAGCCCTGGCGCTGCTTTTCGTCAACCGAACAAGGGGAGGAA
CATTTTTGTGTGAGGAAACAGTATACTACTATGTGCGGCGCGCGCGCTTT
TCATGCACGACATAGTGGCGGCGCCGTTGAATGGTGTGACGTTTACAGAT
CTTTGTTGCTTCTTGTTTGGTCTTCCTGTTGCCCTCCTCGATTGGCTGGC
AGGGCGTAGTGTGCATCATCGCTGCCAACCAGCCGAGTTCTCATGACAAG
CACGATCTGGAAAACGGCTGGCTGGTGGGGACGGGAGAAAGGGAGGCGTT
TCACGCAGACATAGACGTCTAGGCCTTCTCGGCTCACCGTTGGCTACAAG
AAGGCGTCGTTCAAATAACAGAGCATTGAGAAAACGAGAAACGAAGGAAA
GTAGAAGGGAAAATTACAAAATGGGGATCGAGTGTGGCGTTTTGTTGCTT
TTGGCTTGGGGATGGCCATTTTAGCTACAAAATGGGGATCCATCCCCATC
GAAATATGTCAATTTACCCGCACGTCAAAAAAAGGTTACCACGGAAGCAA
ATTTTGTAAATAGGGCTAAAGAGCGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5604:691..1918-

>mRNA_P-wetherbeei_contig5604.1.1 ID=mRNA_P-wetherbeei_contig5604.1.1|Name=mRNA_P-wetherbeei_contig5604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig5604:691..1918- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGTGTTTCTTTTCACTGTACTTAGGTTTTACCTGGAGTGTCGCGTC
GTCTACCACTAGTCTTACGACCATTGTAAAGCTCGGTCAGCGACATTTCA
CGTGCATATTTACCAAGAACGGAGAGATTGGGAAAGTATCTTTCCGCTGG
CCAGGAGGCCGCCGTTTGTCAATAGGAGGTCATCGGTTTCACCACAACGC
TGGCCTATGGAGACCGGGTGAACGATTCAAAGCCCCTTTGCAAGCCTCAT
ACATGAGTCCTGCTTGGCTTTGTCCATCATTCACTTATGGCAATATTTTG
TGTCGCACTTTGGTGCGGGTGGTTGGTTGGCGTTGTCTGGCTGTGTGTCG
TCTGTGCGATGCCACCACTAGCGAGATGTTGGTTGGTCGTTCTGAACTAC
ATCAACTGCAGGACGGCGGCCCTTTTGGAAGCAAATTACTTGCTGCAAGC
AAGGCGCGAAAATCCAGCACCGCTGCTGGTGTGGTGCTACGAAACGCGGG
GCCTTGA
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