mRNA_P-wetherbeei_contig56039.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56039.1.1
Unique NamemRNA_P-wetherbeei_contig56039.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56039.1.1 vs. uniprot
Match: A0A3D1RFD9_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1RFD9_9DELT)

HSP 1 Score: 156 bits (395), Expect = 5.680e-46
Identity = 77/149 (51.68%), Postives = 99/149 (66.44%), Query Frame = 1 
Query:    7 TVLWEDQRGVSVKSFGPDVLLKACVADIRGVET---KHLITAIPKKGVGNVLKALENDLRRLSNSGPVFAVIDRDQIRNSWQPAPPDCMTGLKERIKDKAPGNYDIVFLVENIETLVAACCEALGLSRPTTKPNPDARDRILQRAAWGS 444
            TVLWEDQRG  +K FGP  LL  C+AD  G      +  + +IP KGV N++K L+ D ++L + GPVFAVIDRD+IR+   P PPDCM GL   I+  APG+Y+IVFLV+N+E+L+ A  E L L R   KP PD RDR+ Q+A   S
Sbjct:    4 TVLWEDQRGALIKGFGPHELLIRCLADRSGAHDFGRRQHVESIPLKGVSNLIKRLKQDAQKLRDDGPVFAVIDRDKIRDQLSPKPPDCMKGLSRGIRTAAPGDYEIVFLVQNVESLLDAVIEVLDLPRRAGKPTPDERDRMFQKAKSAS 152
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BLAST of mRNA_P-wetherbeei_contig56039.1.1 vs. uniprot
Match: A0A833GYJ3_9LEPT (Uncharacterized protein n=1 Tax=Leptonema illini TaxID=183 RepID=A0A833GYJ3_9LEPT)

HSP 1 Score: 144 bits (362), Expect = 7.440e-41
Identity = 74/152 (48.68%), Postives = 97/152 (63.82%), Query Frame = 1 
Query:    1 IVTVLWEDQRGVSVKSFGPDVLLKACVAD---IRGVETKHLITAIPKKGVGNVLKALENDLRRLSNSGPVFAVIDRDQIRNSWQ---PAPPDCMTGLKERIKDKAPGNYDIVFLVENIETLVAACCEALGLSRPTTKPNPDARDRILQRAAW 438
            IVTVLWEDQ       FGP  LL +C AD   I   E K+L+ + P+KG GNV  +L+ DL++LSNSGPV AV+DRD+I + W+   P P DC   +  R+K  APG Y ++ + +NIE+L+ A C AL    P  KPNP+ RD +L RAAW
Sbjct:    2 IVTVLWEDQSSSIRAGFGPHELLVSCPADELSIERNEIKNLVESNPRKGNGNVRASLKKDLKKLSNSGPVVAVLDRDKILDLWKKPGPPPADCWNEIDTRMKSDAPGEYCLLLIEQNIESLLEAACAALSQPVPEKKPNPNERDTVLNRAAW 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56039.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D1RFD9_9DELT5.680e-4651.68Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A833GYJ3_9LEPT7.440e-4148.68Uncharacterized protein n=1 Tax=Leptonema illini T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56039contigP-wetherbeei_contig56039:72..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.0178092-CDS-P-wetherbeei_contig56039:71..5151683186834.0178092-CDS-P-wetherbeei_contig56039:71..515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56039 72..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56039.1.1prot_P-wetherbeei_contig56039.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56039 72..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56039.1.1

>prot_P-wetherbeei_contig56039.1.1 ID=prot_P-wetherbeei_contig56039.1.1|Name=mRNA_P-wetherbeei_contig56039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
IVTVLWEDQRGVSVKSFGPDVLLKACVADIRGVETKHLITAIPKKGVGNV
LKALENDLRRLSNSGPVFAVIDRDQIRNSWQPAPPDCMTGLKERIKDKAP
GNYDIVFLVENIETLVAACCEALGLSRPTTKPNPDARDRILQRAAWGS
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mRNA from alignment at P-wetherbeei_contig56039:72..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56039.1.1 ID=mRNA_P-wetherbeei_contig56039.1.1|Name=mRNA_P-wetherbeei_contig56039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig56039:72..515+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGTTACCGTGCTGTGGGAAGACCAGCGAGGGGTCTCAGTCAAGAGCTT
CGGCCCGGATGTTCTTCTCAAAGCATGTGTAGCCGACATTAGGGGCGTAG
AGACCAAGCATCTCATCACTGCCATCCCAAAGAAGGGCGTAGGCAACGTC
CTAAAAGCCCTTGAGAATGACCTCAGAAGATTGAGTAACAGCGGTCCCGT
TTTTGCCGTTATCGATCGAGACCAAATACGCAACTCCTGGCAGCCGGCGC
CTCCTGACTGCATGACGGGTCTCAAGGAACGTATTAAGGATAAAGCTCCA
GGAAATTACGACATCGTTTTCCTTGTTGAGAATATTGAGACGCTAGTGGC
GGCCTGCTGTGAGGCATTAGGGCTATCGCGACCTACCACCAAGCCCAACC
CAGACGCCCGCGACCGGATCTTGCAACGCGCAGCTTGGGGAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56039:72..515+

>mRNA_P-wetherbeei_contig56039.1.1 ID=mRNA_P-wetherbeei_contig56039.1.1|Name=mRNA_P-wetherbeei_contig56039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig56039:72..515+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGTTACCGTGCTGTGGGAAGACCAGCGAGGGGTCTCAGTCAAGAGCTT
CGGCCCGGATGTTCTTCTCAAAGCATGTGTAGCCGACATTAGGGGCGTAG
AGACCAAGCATCTCATCACTGCCATCCCAAAGAAGGGCGTAGGCAACGTC
CTAAAAGCCCTTGAGAATGACCTCAGAAGATTGAGTAACAGCGGTCCCGT
TTTTGCCGTTATCGATCGAGACCAAATACGCAACTCCTGGCAGCCGGCGC
CTCCTGACTGCATGACGGGTCTCAAGGAACGTATTAAGGATAAAGCTCCA
GGAAATTACGACATCGTTTTCCTTGTTGAGAATATTGAGACGCTAGTGGC
GGCCTGCTGTGAGGCATTAGGGCTATCGCGACCTACCACCAAGCCCAACC
CAGACGCCCGCGACCGGATCTTGCAACGCGCAGCTTGGGGAAGC
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