mRNA_P-wetherbeei_contig56020.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56020.1.1
Unique NamemRNA_P-wetherbeei_contig56020.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56020.1.1 vs. uniprot
Match: UPI001BACAACE (hypothetical protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BACAACE)

HSP 1 Score: 78.2 bits (191), Expect = 1.130e-17
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 VRHPGGSIDIATYARIAHRERDAAIAAAVRQTAGSIRALWSAIWRGLG----RSGRTRLNAP 177
            +RHP GS DIA Y RIAHRERDAA+ AAV+ TA S+RA+WSAIWR LG    RSGR R NAP
Sbjct:   18 LRHPDGSPDIAAYGRIAHRERDAAVLAAVQDTARSLRAMWSAIWRVLGGSSGRSGRIRSNAP 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56020.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001BACAACE1.130e-1769.35hypothetical protein n=1 Tax=unclassified Bradyrhi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56020contigP-wetherbeei_contig56020:87..263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size177
Hectar predicted targeting categoryother localisation
Exons1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.8740926-CDS-P-wetherbeei_contig56020:86..2631683186833.8740926-CDS-P-wetherbeei_contig56020:86..263Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56020 87..263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56020.1.1prot_P-wetherbeei_contig56020.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56020 87..263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56020.1.1

>prot_P-wetherbeei_contig56020.1.1 ID=prot_P-wetherbeei_contig56020.1.1|Name=mRNA_P-wetherbeei_contig56020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
VVRHPGGSIDIATYARIAHRERDAAIAAAVRQTAGSIRALWSAIWRGLGR
SGRTRLNAP
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mRNA from alignment at P-wetherbeei_contig56020:87..263-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56020.1.1 ID=mRNA_P-wetherbeei_contig56020.1.1|Name=mRNA_P-wetherbeei_contig56020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig56020:87..263- (Phaeothamnion wetherbeei SAG_119_79)
GTGGTCCGGCATCCCGGTGGCAGCATCGATATCGCGACCTATGCCCGGAT
CGCACATCGCGAGCGGGACGCCGCGATCGCTGCCGCGGTGAGGCAAACAG
CAGGCAGCATCCGCGCGCTGTGGTCGGCGATCTGGCGTGGGTTGGGCCGG
TCGGGGCGCACGCGCTTGAATGCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56020:87..263-

>mRNA_P-wetherbeei_contig56020.1.1 ID=mRNA_P-wetherbeei_contig56020.1.1|Name=mRNA_P-wetherbeei_contig56020.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig56020:87..263- (Phaeothamnion wetherbeei SAG_119_79)
GTGGTCCGGCATCCCGGTGGCAGCATCGATATCGCGACCTATGCCCGGAT
CGCACATCGCGAGCGGGACGCCGCGATCGCTGCCGCGGTGAGGCAAACAG
CAGGCAGCATCCGCGCGCTGTGGTCGGCGATCTGGCGTGGGTTGGGCCGG
TCGGGGCGCACGCGCTTGAATGCGCCC
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