mRNA_P-wetherbeei_contig56015.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56015.2.1
Unique NamemRNA_P-wetherbeei_contig56015.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56015.2.1 vs. uniprot
Match: A0A1W9GYG9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium SG_bin4 TaxID=1827381 RepID=A0A1W9GYG9_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 2.910e-6
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 MQTSTPSGEGRISLEEVGAAHRLTIDVADHTLSYRHVRIDDFT 129
            MQT+T +GEGR   E+ GA  R  IDVAD TL+YR V IDD T
Sbjct:    1 MQTTTSTGEGRNPSEDNGAVIRHAIDVADQTLTYRQVSIDDLT 43
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56015.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1W9GYG9_9PROT2.910e-660.47Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56015contigP-wetherbeei_contig56015:1..129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.6659389-CDS-P-wetherbeei_contig56015:0..1291683186833.6659389-CDS-P-wetherbeei_contig56015:0..129Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56015 1..129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56015.2.1prot_P-wetherbeei_contig56015.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56015 1..129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56015.2.1

>prot_P-wetherbeei_contig56015.2.1 ID=prot_P-wetherbeei_contig56015.2.1|Name=mRNA_P-wetherbeei_contig56015.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
MQTSTPSGEGRISLEEVGAAHRLTIDVADHTLSYRHVRIDDFT
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mRNA from alignment at P-wetherbeei_contig56015:1..129-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56015.2.1 ID=mRNA_P-wetherbeei_contig56015.2.1|Name=mRNA_P-wetherbeei_contig56015.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig56015:1..129- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAACAAGTACTCCAAGCGGCGAAGGCCGCATTTCCCTCGAAGAAGT
TGGTGCCGCTCACCGCCTTACCATCGACGTGGCGGATCACACCTTGTCCT
ATCGGCACGTTCGTATCGACGACTTCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56015:1..129-

>mRNA_P-wetherbeei_contig56015.2.1 ID=mRNA_P-wetherbeei_contig56015.2.1|Name=mRNA_P-wetherbeei_contig56015.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig56015:1..129- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAACAAGTACTCCAAGCGGCGAAGGCCGCATTTCCCTCGAAGAAGT
TGGTGCCGCTCACCGCCTTACCATCGACGTGGCGGATCACACCTTGTCCT
ATCGGCACGTTCGTATCGACGACTTCACC
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