mRNA_P-wetherbeei_contig56000.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A7C3JN57_9PROT (Type II secretion system protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JN57_9PROT) HSP 1 Score: 88.2 bits (217), Expect = 1.260e-19 Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 46 ETRTSTTDPFDNVADY--GGTTGT-TTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
E RTS T PFDNV DY GG G TI+P+S++ GT +AGL YSA + + AQAL I A+D +L ITVTVTGPGN+++TL G+R RYAPNA+P
Sbjct: 86 EARTSGTTPFDNVNDYQVGGVGGPGLTINPVSNLEGTVIAGLEGYSANVRVVAQALDVIPASD------ALLITVTVTGPGNTNVTLHGYRVRYAPNALP 179
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A0S8DQI0_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_47 TaxID=1703406 RepID=A0A0S8DQI0_9GAMM) HSP 1 Score: 86.7 bits (213), Expect = 1.020e-17 Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 46 ETRTSTTDPFDNVADYGG-TTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
ETR S ++PFD+V DY G + T S I ++ GT +AGL +Y +++AAQ G I D +G PQSL ITVTVTGPGN+++TL G+RTRYAPNA+P
Sbjct: 291 ETRYSLSNPFDHVNDYHGFDSNTAAPSGIRNLDGTLIAGLESYRVTVSVAAQPFGGIGN-DASGNPQSLLITVTVTGPGNTTVTLSGYRTRYAPNALP 387
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A809QWG4_9PROT (Uncharacterized protein n=1 Tax=Candidatus Desulfobacillus denitrificans TaxID=2608985 RepID=A0A809QWG4_9PROT) HSP 1 Score: 80.5 bits (197), Expect = 1.690e-16 Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 46 ETRTSTTDPFDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPN 327
ETR + PFDNV DY G T I DITG +AGL AYSA +A+A A G IAAAD +L +TVTVTGPGN ++TL G RTRYAPN
Sbjct: 109 ETRYAALTPFDNVNDYNGFT---MAGGILDITGAPIAGLDAYSAAVAVAPLAFGGIAAAD------ALQVTVTVTGPGNIAVTLDGIRTRYAPN 193
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A536YBV1_9PROT (Type II secretion system protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YBV1_9PROT) HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16 Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query: 46 ETRTSTTDPFDNVADYG-GTTGTTTI--SPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
ETRT P+DNV+DY G T I S +SDI G+A++GLGAY+A +A+A ALG+I AA+ SL +TVTVTGP + ++ L G+R RYAPNA+P
Sbjct: 107 ETRTGGVTPYDNVSDYNLFCMGPTCIPASSVSDINGSAISGLGAYNASVAVAQLALGAIPAAE------SLLVTVTVTGPSSITVKLDGYRVRYAPNALP 200
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A521ZH12_9BURK (Type II secretion system protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A521ZH12_9BURK) HSP 1 Score: 78.6 bits (192), Expect = 9.340e-16 Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 73 FDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
FDNV DY G + I DI GT +A L Y+A +++AA ALGS+AA D +L ITVTVTGP N+++TLQG+RTRYAPNA+P
Sbjct: 114 FDNVNDYHGYSSAAD-GGIKDIGGTVIATLSNYAATVSVAATALGSVAATD------ALLITVTVTGPANTTVTLQGYRTRYAPNALP 194
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: UPI000FDEA387 (type II secretion system protein n=1 Tax=Piscinibacter defluvii TaxID=1796922 RepID=UPI000FDEA387) HSP 1 Score: 76.3 bits (186), Expect = 7.090e-15 Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 73 FDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNA 330
FD+V DY G T ++ I DITG AV GLGAY A + +AA ALGS++AA G+ +L ITVTVTGP N+S++L G+RTR+AP +
Sbjct: 114 FDHVDDYHGYT----MNGIVDITGAAVNGLGAYRASVGVAAAALGSVSAASGD----ALRITVTVTGPANTSVSLDGYRTRHAPQS 191
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A519YX58_9BURK (Type II secretion system protein n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A519YX58_9BURK) HSP 1 Score: 75.9 bits (185), Expect = 8.190e-15 Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 73 FDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNA 330
FDNV DY G + +S I DIT TAV GL Y+A +A+AA ALGSI A G+ +L ITVTVTGPG++++ L G+R+R+APN+
Sbjct: 105 FDNVNDYNGFS----MSGIKDITNTAVTGLSNYNASVAVAAAALGSITAGSGD----ALRITVTVTGPGSTTIVLDGYRSRHAPNS 182
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A5C9BKK0_9PROT (Uncharacterized protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A5C9BKK0_9PROT) HSP 1 Score: 76.3 bits (186), Expect = 9.220e-15 Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query: 37 PNTETRTSTTDPFDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
P E R T PFDNVADYG + + I+DITGT V GL YSA + IA + AAD A L ITV VTGPGN+ + L G+RTRYAP +P
Sbjct: 115 PAAEARGHATAPFDNVADYGNYS----MPTIADITGTDVTGLNGYSASVGIARAGTALLGAADDGAA---LRITVAVTGPGNTQVVLDGYRTRYAPRVLP 207
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: UPI001B86D169 (type II secretion system GspH family protein n=1 Tax=Propionivibrio limicola TaxID=167645 RepID=UPI001B86D169) HSP 1 Score: 74.7 bits (182), Expect = 2.190e-14 Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 70 PFDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
PFDNV DY G ++ I+D+ G AV LG YSA +A+A L +I A GN +L I+VT TGPG S TL+G+R RYAPN +P
Sbjct: 101 PFDNVNDYNGLA----LAAITDVAGVAVPYLGGYSASVAVAPVVLNTITEASGN----ALRISVTATGPGGQSFTLEGYRARYAPNDIP 181
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: UPI001F2203AE (type II secretion system protein n=1 Tax=Pelomonas sp. P7 TaxID=2906763 RepID=UPI001F2203AE) HSP 1 Score: 73.6 bits (179), Expect = 6.610e-14 Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 73 FDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNA 330
FDNV DY G + ++ ISD +G V GL Y+A +A+AA +L +++AA G+ +L ITVTV+GP NSSL LQG+RTRYAPN+
Sbjct: 106 FDNVNDYAGFS----MAGISDFSGAPVPGLSGYTASVAVAAASLDTLSAASGD----ALKITVTVSGPDNSSLVLQGWRTRYAPNS 183 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56000.2.1 >prot_P-wetherbeei_contig56000.2.1 ID=prot_P-wetherbeei_contig56000.2.1|Name=mRNA_P-wetherbeei_contig56000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp CATTAQSDNKTQPNTETRTSTTDPFDNVADYGGTTGTTTISPISDITGTAback to top mRNA from alignment at P-wetherbeei_contig56000:169..507- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56000.2.1 ID=mRNA_P-wetherbeei_contig56000.2.1|Name=mRNA_P-wetherbeei_contig56000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig56000:169..507- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56000:169..507- >mRNA_P-wetherbeei_contig56000.2.1 ID=mRNA_P-wetherbeei_contig56000.2.1|Name=mRNA_P-wetherbeei_contig56000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig56000:169..507- (Phaeothamnion wetherbeei SAG_119_79)back to top |