mRNA_P-wetherbeei_contig56000.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56000.2.1
Unique NamemRNA_P-wetherbeei_contig56000.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A7C3JN57_9PROT (Type II secretion system protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JN57_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 1.260e-19
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   46 ETRTSTTDPFDNVADY--GGTTGT-TTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
            E RTS T PFDNV DY  GG  G   TI+P+S++ GT +AGL  YSA + + AQAL  I A+D      +L ITVTVTGPGN+++TL G+R RYAPNA+P
Sbjct:   86 EARTSGTTPFDNVNDYQVGGVGGPGLTINPVSNLEGTVIAGLEGYSANVRVVAQALDVIPASD------ALLITVTVTGPGNTNVTLHGYRVRYAPNALP 179          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A0S8DQI0_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_47 TaxID=1703406 RepID=A0A0S8DQI0_9GAMM)

HSP 1 Score: 86.7 bits (213), Expect = 1.020e-17
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   46 ETRTSTTDPFDNVADYGG-TTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
            ETR S ++PFD+V DY G  + T   S I ++ GT +AGL +Y   +++AAQ  G I   D +G PQSL ITVTVTGPGN+++TL G+RTRYAPNA+P
Sbjct:  291 ETRYSLSNPFDHVNDYHGFDSNTAAPSGIRNLDGTLIAGLESYRVTVSVAAQPFGGIGN-DASGNPQSLLITVTVTGPGNTTVTLSGYRTRYAPNALP 387          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A809QWG4_9PROT (Uncharacterized protein n=1 Tax=Candidatus Desulfobacillus denitrificans TaxID=2608985 RepID=A0A809QWG4_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 1.690e-16
Identity = 53/94 (56.38%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   46 ETRTSTTDPFDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPN 327
            ETR +   PFDNV DY G T       I DITG  +AGL AYSA +A+A  A G IAAAD      +L +TVTVTGPGN ++TL G RTRYAPN
Sbjct:  109 ETRYAALTPFDNVNDYNGFT---MAGGILDITGAPIAGLDAYSAAVAVAPLAFGGIAAAD------ALQVTVTVTGPGNIAVTLDGIRTRYAPN 193          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A536YBV1_9PROT (Type II secretion system protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YBV1_9PROT)

HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   46 ETRTSTTDPFDNVADYG-GTTGTTTI--SPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
            ETRT    P+DNV+DY     G T I  S +SDI G+A++GLGAY+A +A+A  ALG+I AA+      SL +TVTVTGP + ++ L G+R RYAPNA+P
Sbjct:  107 ETRTGGVTPYDNVSDYNLFCMGPTCIPASSVSDINGSAISGLGAYNASVAVAQLALGAIPAAE------SLLVTVTVTGPSSITVKLDGYRVRYAPNALP 200          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A521ZH12_9BURK (Type II secretion system protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A521ZH12_9BURK)

HSP 1 Score: 78.6 bits (192), Expect = 9.340e-16
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   73 FDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
            FDNV DY G +       I DI GT +A L  Y+A +++AA ALGS+AA D      +L ITVTVTGP N+++TLQG+RTRYAPNA+P
Sbjct:  114 FDNVNDYHGYSSAAD-GGIKDIGGTVIATLSNYAATVSVAATALGSVAATD------ALLITVTVTGPANTTVTLQGYRTRYAPNALP 194          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: UPI000FDEA387 (type II secretion system protein n=1 Tax=Piscinibacter defluvii TaxID=1796922 RepID=UPI000FDEA387)

HSP 1 Score: 76.3 bits (186), Expect = 7.090e-15
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   73 FDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNA 330
            FD+V DY G T    ++ I DITG AV GLGAY A + +AA ALGS++AA G+    +L ITVTVTGP N+S++L G+RTR+AP +
Sbjct:  114 FDHVDDYHGYT----MNGIVDITGAAVNGLGAYRASVGVAAAALGSVSAASGD----ALRITVTVTGPANTSVSLDGYRTRHAPQS 191          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A519YX58_9BURK (Type II secretion system protein n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A519YX58_9BURK)

HSP 1 Score: 75.9 bits (185), Expect = 8.190e-15
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   73 FDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNA 330
            FDNV DY G +    +S I DIT TAV GL  Y+A +A+AA ALGSI A  G+    +L ITVTVTGPG++++ L G+R+R+APN+
Sbjct:  105 FDNVNDYNGFS----MSGIKDITNTAVTGLSNYNASVAVAAAALGSITAGSGD----ALRITVTVTGPGSTTIVLDGYRSRHAPNS 182          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: A0A5C9BKK0_9PROT (Uncharacterized protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A5C9BKK0_9PROT)

HSP 1 Score: 76.3 bits (186), Expect = 9.220e-15
Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   37 PNTETRTSTTDPFDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
            P  E R   T PFDNVADYG  +    +  I+DITGT V GL  YSA + IA      + AAD   A   L ITV VTGPGN+ + L G+RTRYAP  +P
Sbjct:  115 PAAEARGHATAPFDNVADYGNYS----MPTIADITGTDVTGLNGYSASVGIARAGTALLGAADDGAA---LRITVAVTGPGNTQVVLDGYRTRYAPRVLP 207          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: UPI001B86D169 (type II secretion system GspH family protein n=1 Tax=Propionivibrio limicola TaxID=167645 RepID=UPI001B86D169)

HSP 1 Score: 74.7 bits (182), Expect = 2.190e-14
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   70 PFDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNAVP 336
            PFDNV DY G      ++ I+D+ G AV  LG YSA +A+A   L +I  A GN    +L I+VT TGPG  S TL+G+R RYAPN +P
Sbjct:  101 PFDNVNDYNGLA----LAAITDVAGVAVPYLGGYSASVAVAPVVLNTITEASGN----ALRISVTATGPGGQSFTLEGYRARYAPNDIP 181          
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Match: UPI001F2203AE (type II secretion system protein n=1 Tax=Pelomonas sp. P7 TaxID=2906763 RepID=UPI001F2203AE)

HSP 1 Score: 73.6 bits (179), Expect = 6.610e-14
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   73 FDNVADYGGTTGTTTISPISDITGTAVAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQGFRTRYAPNA 330
            FDNV DY G +    ++ ISD +G  V GL  Y+A +A+AA +L +++AA G+    +L ITVTV+GP NSSL LQG+RTRYAPN+
Sbjct:  106 FDNVNDYAGFS----MAGISDFSGAPVPGLSGYTASVAVAAASLDTLSAASGD----ALKITVTVSGPDNSSLVLQGWRTRYAPNS 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56000.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3JN57_9PROT1.260e-1956.00Type II secretion system protein n=1 Tax=Betaprote... [more]
A0A0S8DQI0_9GAMM1.020e-1754.08Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A809QWG4_9PROT1.690e-1656.38Uncharacterized protein n=1 Tax=Candidatus Desulfo... [more]
A0A536YBV1_9PROT3.770e-1652.00Type II secretion system protein n=2 Tax=Betaprote... [more]
A0A521ZH12_9BURK9.340e-1654.55Type II secretion system protein n=1 Tax=Burkholde... [more]
UPI000FDEA3877.090e-1554.65type II secretion system protein n=1 Tax=Pisciniba... [more]
A0A519YX58_9BURK8.190e-1553.49Type II secretion system protein n=2 Tax=Burkholde... [more]
A0A5C9BKK0_9PROT9.220e-1550.00Uncharacterized protein n=1 Tax=Gallionellaceae ba... [more]
UPI001B86D1692.190e-1449.44type II secretion system GspH family protein n=1 T... [more]
UPI001F2203AE6.610e-1452.33type II secretion system protein n=1 Tax=Pelomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56000contigP-wetherbeei_contig56000:169..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog292415.Tbd_0756
PFAMsN_methyl
Model size339
Max annot lvl28216|Betaproteobacteria
KEGG koko:K10927
KEGG Pathwayko05111,map05111
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.87e-12
EggNOG OGsCOG4967@1|root,COG4967@2|Bacteria,1RKKA@1224|Proteobacteria,2VTQ8@28216|Betaproteobacteria
Descriptiontype IV pilus modification protein PilV
Cds size339
COG categoryNU
BRITEko00000,ko00001,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.5162385-CDS-P-wetherbeei_contig56000:168..5071683186833.5162385-CDS-P-wetherbeei_contig56000:168..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56000 169..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56000.2.1prot_P-wetherbeei_contig56000.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56000 169..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56000.2.1

>prot_P-wetherbeei_contig56000.2.1 ID=prot_P-wetherbeei_contig56000.2.1|Name=mRNA_P-wetherbeei_contig56000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
CATTAQSDNKTQPNTETRTSTTDPFDNVADYGGTTGTTTISPISDITGTA
VAGLGAYSAQIAIAAQALGSIAAADGNGAPQSLAITVTVTGPGNSSLTLQ
GFRTRYAPNAVP*
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mRNA from alignment at P-wetherbeei_contig56000:169..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56000.2.1 ID=mRNA_P-wetherbeei_contig56000.2.1|Name=mRNA_P-wetherbeei_contig56000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig56000:169..507- (Phaeothamnion wetherbeei SAG_119_79)
TGCGCGACGACCGCGCAAAGCGACAACAAGACCCAGCCGAATACCGAGAC GCGGACCAGCACCACGGACCCGTTCGACAACGTCGCTGACTATGGCGGCA CGACAGGCACGACGACGATCAGCCCGATCAGCGACATCACCGGGACCGCA GTTGCCGGACTCGGCGCGTACAGCGCGCAGATCGCCATTGCCGCGCAGGC GCTGGGCAGCATCGCGGCAGCGGACGGCAACGGCGCGCCGCAATCGCTCG CCATTACCGTGACCGTGACCGGGCCGGGCAACAGCAGCCTGACGCTGCAA GGGTTCCGCACCCGCTATGCGCCCAATGCCGTGCCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56000:169..507-

>mRNA_P-wetherbeei_contig56000.2.1 ID=mRNA_P-wetherbeei_contig56000.2.1|Name=mRNA_P-wetherbeei_contig56000.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig56000:169..507- (Phaeothamnion wetherbeei SAG_119_79)
TGCGCGACGACCGCGCAAAGCGACAACAAGACCCAGCCGAATACCGAGAC
GCGGACCAGCACCACGGACCCGTTCGACAACGTCGCTGACTATGGCGGCA
CGACAGGCACGACGACGATCAGCCCGATCAGCGACATCACCGGGACCGCA
GTTGCCGGACTCGGCGCGTACAGCGCGCAGATCGCCATTGCCGCGCAGGC
GCTGGGCAGCATCGCGGCAGCGGACGGCAACGGCGCGCCGCAATCGCTCG
CCATTACCGTGACCGTGACCGGGCCGGGCAACAGCAGCCTGACGCTGCAA
GGGTTCCGCACCCGCTATGCGCCCAATGCCGTGCCATGA
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