mRNA_P-wetherbeei_contig5600.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5600.1.1
Unique NamemRNA_P-wetherbeei_contig5600.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5600.1.1 vs. uniprot
Match: D8LBM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM9_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.660e-5
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1 
Query: 1840 VTCCWSRRLPYPVCSLAAADLDSDGRRELVVITQYGVHVLRRDPTDDARRVAERLDAL 2013
            +T  W R LP+ V  +A  D + DG RELVV TQYGVHV R D   +A R A+ + AL
Sbjct:  571 LTARWQRDLPHGVLRIAFGDFNHDGVRELVVATQYGVHVFRPDYRAEASRFAKTMHAL 628
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BLAST of mRNA_P-wetherbeei_contig5600.1.1 vs. uniprot
Match: A0A6P6H3Z2_PUMCO (KICSTOR complex protein kaptin n=1 Tax=Puma concolor TaxID=9696 RepID=A0A6P6H3Z2_PUMCO)

HSP 1 Score: 57.0 bits (136), Expect = 7.410e-5
Identity = 43/124 (34.68%), Postives = 61/124 (49.19%), Query Frame = 1 
Query:  754 ENPAARTAANNVDGGTG-----QEDVALLICGGDGRVHVFVRHGGVGNFVEHTDGGRGRRRLFPELLDLGAPVSCIAVRR--DGPRRLVAVGCVDGLVRLARVEYRRRRQPALEVTEIRFEGPV 1104
            E+PA R  +  V GG G     Q D   L+ G D  +H++  + G+  F EH         LFPEL +L + V  + V       RRL A+GC  G VR+A V+  +R Q  L+   I  +GP+
Sbjct:   68 EHPAVRVVSGVV-GGVGVQVGNQLDTVFLLSGNDPAIHLYKENEGLHQFEEHPV-----ENLFPELTNLTSSVLWLDVHNLPGTSRRLSALGCQSGYVRVAHVD--QRSQEVLQTWTILQDGPI 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5600.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBM9_ECTSI3.660e-550.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6P6H3Z2_PUMCO7.410e-534.68KICSTOR complex protein kaptin n=1 Tax=Puma concol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5600contigP-wetherbeei_contig5600:178..2241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog8496.XP_006265042.1
Preferred nameKPTN
Model size2064
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0006950,GO:0007154,GO:0008092,GO:0008104,GO:0008150,GO:0009267,GO:0009605,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010646,GO:0010648,GO:0015629,GO:0023051,GO:0023057,GO:0030027,GO:0031252,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032420,GO:0032421,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034613,GO:0042149,GO:0042594,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044456,GO:0044464,GO:0044877,GO:0045202,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051179,GO:0051641,GO:0051716,GO:0061462,GO:0065007,GO:0070727,GO:0071496,GO:0072665,GO:0097458,GO:0098794,GO:0098858,GO:0098862,GO:0098871,GO:0099571,GO:0120025,GO:0140007,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1990928
Exons1
Evalue3.2e-05
EggNOG OGs28KYB@1|root,2QTF2@2759|Eukaryota,39UQK@33154|Opisthokonta,3BD3Z@33208|Metazoa,3CVMA@33213|Bilateria,48C3M@7711|Chordata,4912A@7742|Vertebrata
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003370.1
DescriptionKaptin (actin binding protein)
Cds size1815
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.4144387-UTR-P-wetherbeei_contig5600:177..3931683186833.4144387-UTR-P-wetherbeei_contig5600:177..393Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5600 178..393 +
1683186833.4347894-UTR-P-wetherbeei_contig5600:2208..22411683186833.4347894-UTR-P-wetherbeei_contig5600:2208..2241Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5600 2209..2241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.4248638-CDS-P-wetherbeei_contig5600:393..22081683186833.4248638-CDS-P-wetherbeei_contig5600:393..2208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5600 394..2208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5600.1.1prot_P-wetherbeei_contig5600.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5600 394..2208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5600.1.1

>prot_P-wetherbeei_contig5600.1.1 ID=prot_P-wetherbeei_contig5600.1.1|Name=mRNA_P-wetherbeei_contig5600.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=605bp
MEPFLTRSPFSRRLLIVNGSNLSVLEDEEREGAYRFELLRCVQHSMELLG
CHAMVLPEGRKMVLCLTLRTDLQNTERPGSSNPSRGHPARSQSRHRTAAP
NPAWLHIYEGNGDSIRFSFPPAHAFQQFELSFLPLSLTDAPIWHDAPASG
SDAPNDAGNHGSDGNSGAEGDDSNDARLRENPAARTAANNVDGGTGQEDV
ALLICGGDGRVHVFVRHGGVGNFVEHTDGGRGRRRLFPELLDLGAPVSCI
AVRRDGPRRLVAVGCVDGLVRLARVEYRRRRQPALEVTEIRFEGPVVSIE
WTTPESALCVTCLGLVCRLDFRPTVSCPAGKAGIFYTGCGSSGDYAAAEA
GGKRTRHPVRAAGRAMLLPSLEPGNSVTCALLYGGDGGRIGRKSESNPQV
IVGTFHGDLSLWDLGSAADPSWHDVWAEEAAPATTHANELLALTAYSGGP
PSAPLAENGQHPLAPEETRHDRALLAVHAAGDVVIAGQDTGEAAAAAAAA
PSSASATHPAATAAAAVAAAPSAAAAIPTAGGRERRSGMNPVTCCWSRRL
PYPVCSLAAADLDSDGRRELVVITQYGVHVLRRDPTDDARRVAERLDALL
AGTC*
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mRNA from alignment at P-wetherbeei_contig5600:178..2241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5600.1.1 ID=mRNA_P-wetherbeei_contig5600.1.1|Name=mRNA_P-wetherbeei_contig5600.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2064bp|location=Sequence derived from alignment at P-wetherbeei_contig5600:178..2241+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCATGCTTTCCGAGGCTGCATACTTCCGGCTGGAGGAGCACGCGGCGC
GCTACGGCGTCTCTTCCTTTTCTGCTGGCCAGGAAAAGTGAGACAAAGAT
GCATTCGTGAGAGAGCAACTTCTGCAAAACTTTTCGTCGCAACAATGAAT
AATGGCGCATGAATTTCGTCCTGCCATTTCAGCACGACGACCATTAGCTT
GGAAATCAAGGTCTTGATGGAGCCATTTCTCACGCGAAGTCCCTTTTCCC
GCAGGCTCCTCATTGTCAATGGCTCAAACCTCAGCGTCCTCGAAGACGAA
GAGCGAGAGGGCGCGTACCGGTTCGAGCTTCTTCGCTGCGTACAGCATAG
CATGGAGTTGCTTGGCTGCCACGCCATGGTCCTTCCGGAAGGAAGGAAAA
TGGTGCTTTGCCTCACTCTTCGCACCGACCTACAGAACACTGAGCGTCCA
GGCAGCTCCAATCCATCGCGCGGACATCCTGCTAGATCGCAGTCACGACA
CCGGACTGCAGCGCCCAACCCTGCCTGGCTTCACATCTACGAAGGCAATG
GGGATTCCATCCGGTTTTCTTTCCCGCCGGCACATGCCTTTCAGCAGTTC
GAGCTTTCCTTCTTGCCGCTTAGCCTGACAGATGCCCCGATTTGGCACGA
TGCCCCGGCGAGTGGAAGCGACGCGCCAAACGACGCCGGCAACCACGGCA
GCGACGGCAACAGTGGAGCCGAAGGCGACGACAGCAACGATGCGCGCCTT
CGCGAAAACCCTGCCGCTCGTACTGCCGCCAACAATGTTGACGGTGGTAC
CGGCCAAGAGGACGTCGCCCTCCTCATCTGCGGCGGCGACGGCCGCGTCC
ATGTCTTCGTCCGGCATGGCGGCGTGGGCAACTTCGTCGAGCACACGGAT
GGCGGCCGCGGCCGCCGCCGGCTCTTCCCGGAGTTGCTGGACCTCGGGGC
GCCAGTGTCGTGCATTGCGGTGCGCCGCGATGGCCCGCGACGGCTGGTGG
CAGTGGGCTGTGTCGACGGCCTGGTGCGGCTGGCGCGGGTAGAATACCGG
CGGCGGCGCCAGCCGGCGCTCGAGGTAACGGAAATTCGGTTCGAGGGCCC
TGTCGTCAGCATTGAGTGGACGACGCCCGAGTCCGCCCTCTGCGTAACAT
GCCTCGGCTTAGTGTGCCGGCTCGATTTCCGTCCTACCGTCTCTTGCCCC
GCCGGCAAAGCTGGTATTTTTTATACCGGCTGTGGCAGCAGCGGTGACTA
TGCAGCGGCGGAGGCAGGCGGAAAGCGCACCCGCCACCCGGTGCGCGCTG
CAGGGAGAGCGATGCTTTTGCCGAGTCTGGAGCCGGGAAACTCGGTGACC
TGTGCGCTTTTATACGGCGGCGATGGCGGTCGAATTGGCAGGAAAAGCGA
GAGTAACCCACAAGTTATCGTCGGCACTTTTCACGGGGACTTGTCCCTTT
GGGACCTGGGAAGCGCCGCGGACCCGAGCTGGCACGACGTGTGGGCAGAA
GAGGCTGCTCCAGCGACGACGCACGCCAATGAGCTGCTCGCCTTGACAGC
ATACAGTGGGGGGCCGCCCAGTGCACCGCTTGCTGAAAATGGACAGCATC
CTTTGGCGCCCGAAGAGACTAGACATGACCGGGCGCTTTTGGCGGTGCAC
GCTGCCGGAGACGTGGTGATCGCTGGTCAGGATACAGGGGAGGCGGCAGC
GGCAGCGGCGGCGGCTCCTTCGTCCGCGTCGGCGACCCATCCGGCGGCGA
CGGCGGCAGCAGCGGTGGCGGCGGCTCCTTCTGCGGCAGCGGCGATCCCG
ACGGCGGGGGGCCGAGAGCGGCGTTCTGGAATGAACCCGGTGACTTGTTG
CTGGAGCCGGCGTCTGCCGTACCCAGTGTGTTCGCTCGCCGCCGCCGACC
TCGATTCGGACGGGCGGCGCGAACTGGTCGTCATAACGCAGTACGGCGTT
CACGTGCTCCGTCGAGATCCGACGGACGATGCGAGGAGGGTTGCCGAAAG
ATTGGATGCGCTGCTGGCCGGCACTTGTTGATAAACCCCCTTCTAATATT
GAGTCTGTTCCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5600:178..2241+

>mRNA_P-wetherbeei_contig5600.1.1 ID=mRNA_P-wetherbeei_contig5600.1.1|Name=mRNA_P-wetherbeei_contig5600.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1815bp|location=Sequence derived from alignment at P-wetherbeei_contig5600:178..2241+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCCATTTCTCACGCGAAGTCCCTTTTCCCGCAGGCTCCTCATTGT
CAATGGCTCAAACCTCAGCGTCCTCGAAGACGAAGAGCGAGAGGGCGCGT
ACCGGTTCGAGCTTCTTCGCTGCGTACAGCATAGCATGGAGTTGCTTGGC
TGCCACGCCATGGTCCTTCCGGAAGGAAGGAAAATGGTGCTTTGCCTCAC
TCTTCGCACCGACCTACAGAACACTGAGCGTCCAGGCAGCTCCAATCCAT
CGCGCGGACATCCTGCTAGATCGCAGTCACGACACCGGACTGCAGCGCCC
AACCCTGCCTGGCTTCACATCTACGAAGGCAATGGGGATTCCATCCGGTT
TTCTTTCCCGCCGGCACATGCCTTTCAGCAGTTCGAGCTTTCCTTCTTGC
CGCTTAGCCTGACAGATGCCCCGATTTGGCACGATGCCCCGGCGAGTGGA
AGCGACGCGCCAAACGACGCCGGCAACCACGGCAGCGACGGCAACAGTGG
AGCCGAAGGCGACGACAGCAACGATGCGCGCCTTCGCGAAAACCCTGCCG
CTCGTACTGCCGCCAACAATGTTGACGGTGGTACCGGCCAAGAGGACGTC
GCCCTCCTCATCTGCGGCGGCGACGGCCGCGTCCATGTCTTCGTCCGGCA
TGGCGGCGTGGGCAACTTCGTCGAGCACACGGATGGCGGCCGCGGCCGCC
GCCGGCTCTTCCCGGAGTTGCTGGACCTCGGGGCGCCAGTGTCGTGCATT
GCGGTGCGCCGCGATGGCCCGCGACGGCTGGTGGCAGTGGGCTGTGTCGA
CGGCCTGGTGCGGCTGGCGCGGGTAGAATACCGGCGGCGGCGCCAGCCGG
CGCTCGAGGTAACGGAAATTCGGTTCGAGGGCCCTGTCGTCAGCATTGAG
TGGACGACGCCCGAGTCCGCCCTCTGCGTAACATGCCTCGGCTTAGTGTG
CCGGCTCGATTTCCGTCCTACCGTCTCTTGCCCCGCCGGCAAAGCTGGTA
TTTTTTATACCGGCTGTGGCAGCAGCGGTGACTATGCAGCGGCGGAGGCA
GGCGGAAAGCGCACCCGCCACCCGGTGCGCGCTGCAGGGAGAGCGATGCT
TTTGCCGAGTCTGGAGCCGGGAAACTCGGTGACCTGTGCGCTTTTATACG
GCGGCGATGGCGGTCGAATTGGCAGGAAAAGCGAGAGTAACCCACAAGTT
ATCGTCGGCACTTTTCACGGGGACTTGTCCCTTTGGGACCTGGGAAGCGC
CGCGGACCCGAGCTGGCACGACGTGTGGGCAGAAGAGGCTGCTCCAGCGA
CGACGCACGCCAATGAGCTGCTCGCCTTGACAGCATACAGTGGGGGGCCG
CCCAGTGCACCGCTTGCTGAAAATGGACAGCATCCTTTGGCGCCCGAAGA
GACTAGACATGACCGGGCGCTTTTGGCGGTGCACGCTGCCGGAGACGTGG
TGATCGCTGGTCAGGATACAGGGGAGGCGGCAGCGGCAGCGGCGGCGGCT
CCTTCGTCCGCGTCGGCGACCCATCCGGCGGCGACGGCGGCAGCAGCGGT
GGCGGCGGCTCCTTCTGCGGCAGCGGCGATCCCGACGGCGGGGGGCCGAG
AGCGGCGTTCTGGAATGAACCCGGTGACTTGTTGCTGGAGCCGGCGTCTG
CCGTACCCAGTGTGTTCGCTCGCCGCCGCCGACCTCGATTCGGACGGGCG
GCGCGAACTGGTCGTCATAACGCAGTACGGCGTTCACGTGCTCCGTCGAG
ATCCGACGGACGATGCGAGGAGGGTTGCCGAAAGATTGGATGCGCTGCTG
GCCGGCACTTGTTGA
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