mRNA_P-wetherbeei_contig56.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56.3.1
Unique NamemRNA_P-wetherbeei_contig56.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: A0A6H5KFV9_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV9_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 8.810e-79
Identity = 127/234 (54.27%), Postives = 161/234 (68.80%), Query Frame = 1
Query:    1 KAPKLVITGDTIEEEPHMVVTVVATFALATFVLLRAAVEASTPLMGFESVAAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLPLLALVALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWKLDHNIKNQAL 702
            KAP++V+ GD +   P M+V V ++ AL    LL+A    ++PL    + A A  G   AD  +G+FH+ VDNYG+ STPVFG+VIEAFQGHH SPWTIT R F NNVHKI Y VLPLLAL+ LV PGP   +  V FLV S+MS E H+F+HM SPP  VRALQ  GV +SR+ HG+HHSSPF++ YCIVTG CN  +D   +FR +E ++Y+  GVE   WKLD ++K  AL
Sbjct:  149 KAPEVVVEGDLLGNTPKMIVLVWSSLALNAIYLLQALSTVTSPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDDSTPVFGAVIEAFQGHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVALGVTFLVGSLMSNEFHRFAHMTSPPPLVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFMERVVYELNGVEPIAWKLDPSVKEVAL 382          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: A0A835ZEB7_9STRA (Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB7_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.090e-78
Identity = 124/230 (53.91%), Postives = 157/230 (68.26%), Query Frame = 1
Query:    1 KAPKLVITGDTIEEEPHMVVTVVATFALATF----VLLRAAVEASTPLMGFESVAAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLPLLALVALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWKLD 678
            +A KLVI  DT+ +EP+M+  V AT  +A      V+                VAA + G+LF+D FTG+FH+ VDNYGN  TPV G VI AFQGHH+SPWTIT R FANNVHK+ YGVLPLL L+AL  PGP  +   V+ L+  +M QELHK+SHM+ PP  V  LQ +G+ILS++ HG HH+SPF+  YCIVTGHCNE MD + ++R LE ++Y+ TGVE N WKLD
Sbjct:   72 EAAKLVIDSDTLTDEPYMIAIVAATVVMAAAMTSGVIGAXXXXXXXXXXXXXXVAATVAGILFSDAFTGVFHWSVDNYGNLQTPVLGPVIAAFQGHHESPWTITYRNFANNVHKVAYGVLPLLGLLALSHPGPAGTMFGVSALMGLLMCQELHKYSHMVRPPQWVARLQQSGIILSKKEHGLHHTSPFEGKYCIVTGHCNEIMDSTNLYRHLERVVYERTGVEPNCWKLD 301          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: D7G5G4_ECTSI (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G4_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.540e-75
Identity = 120/217 (55.30%), Postives = 150/217 (69.12%), Query Frame = 1
Query:   52 MVVTVVATFALATFVLLRAAVEASTPLMGFESVAAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLPLLALVALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWKLDHNIKNQAL 702
            M+  V ++ AL     L+A    ++PL    + A A  G   AD  +G+FH+ VDNYG+GSTPVFG+VIEAFQGHH SPWTIT R F NNVHKI Y VLPLLAL+ LV PGP   +  VAFLV S+MS E H+F+HM SPP  VRALQ  GV +SR+ HG+HHSSPF++ YCIVTG CN  +D   +FR +E ++Y+  GVE   WKLD ++K  AL
Sbjct:    1 MIALVWSSLALNAIYFLQALSTVTSPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDGSTPVFGAVIEAFQGHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVALGVAFLVGSLMSNEFHRFAHMTSPPPIVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGVCNGPLDHFRVFRFMERVVYELNGVEPIAWKLDPSVKEVAL 217          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: A0A0G4GQ94_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ94_9ALVE)

HSP 1 Score: 227 bits (578), Expect = 6.600e-70
Identity = 117/241 (48.55%), Postives = 155/241 (64.32%), Query Frame = 1
Query:    1 KAPKLVITGDTIEEEPHMVVTVVATFALATFVLLRAAVEASTPLMGFESVAAAIG---GLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLPLLAL-VALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWKLDHNIKNQALRMM 711
            KAP LV+ GD+++  P     V +T  LA F L ++A+  S+       +  A+G    L+F DFF+G+FH++ DNYGNGSTPVFG VIE FQGHH +PWTIT R F NN  KICY    ++AL   L+G  P   +    F V+   +QE HK+SHM +PPA VR LQDAG+ILSR+ HGQHH+SPF+ HYCI+ G CN  +D  G FR LE  +    G E N+WKLD +++ +  R+M
Sbjct:  107 KAPVLVVEGDSVKSTPWQKGVVWSTLLLALFSLTKSAISVSSAQSLAGGLDIALGFLCALVFGDFFSGLFHWVADNYGNGSTPVFGGVIEGFQGHHKAPWTITYRDFENNTFKICYAAGAIVALSFLLLGGSPFWQTFWTVFAVSQAFAQEFHKYSHMTNPPALVRRLQDAGLILSRKEHGQHHNSPFEGHYCILFGFCNRPLDSIGFFRFLERRVVALGGHEPNSWKLDESLREEQKRIM 347          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: A0A6S9FHC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FHC8_HETAK)

HSP 1 Score: 220 bits (561), Expect = 6.820e-68
Identity = 115/236 (48.73%), Postives = 160/236 (67.80%), Query Frame = 1
Query:    7 PKLVITGDTIEEEPHMVVTVVATFALATFVLLRAAVEA-STPLMGFESVAAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLPLLALVALVGPGPVTSSS-AVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWKLDHNIKNQALRM 708
            P+L I GD++E+ P + + + A F +  F L+ + + A  TP       A  +   +F+DFF+G+FH+ VDNYGNG TP+ GSVIEAFQGHH +PWTIT R FANNVHKIC   +P+ AL+A   P  + +    V +L   V+SQE HK SHM++PPA  + LQ+  VI+SR+ HG HHSSPF+ +YCI+TG CN+ +D+S +FR LE ++Y+  GVE N WKLD  +K +AL +
Sbjct:   75 PELAIEGDSLEDSP-VTIGITAAFWVLAFSLIGSYIMAIQTPAEAITMGATFLFSTVFSDFFSGVFHWSVDNYGNGKTPLLGSVIEAFQGHHSAPWTITYRPFANNVHKICKVAIPI-ALIANALPLALPAKLFTVLWLCFQVLSQEFHKLSHMVNPPAWAQVLQEKNVIISRKVHGLHHSSPFEGNYCILTGWCNQALDQSRLFRGLEKLVYEWNGVEPNCWKLDPKVKAEALAL 308          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: A0A7S2W8D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8D5_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.060e-64
Identity = 108/237 (45.57%), Postives = 151/237 (63.71%), Query Frame = 1
Query:    4 APKLVITGDTIEEEPHMVVTVVATFALATFVLLRAAVE----ASTPLMGFESVAAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLPLLALVALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWKLDHNIKNQAL 702
            +P LV+ GDT+E  P  V  V + + L +F+ L+  ++    + +P       A+A+  ++F+D F+G+FH++ DNYGNG TP+ G VIEAFQGHH +PWTIT R F NNVHKI    +PL  LV ++   P      V F  A ++SQE HK SH ++PP     LQ   VILSR+ HG HHSSPF+ HYCI+TG CN+ +D+  ++R LE I+Y+  GVE N WK D ++K  +L
Sbjct:   93 SPVLVLGGDTLETRPKHVALVTSAW-LVSFIALKPVLDLWMSSPSPEQLVSVSASALASMIFSDLFSGLFHWVADNYGNGRTPILGGVIEAFQGHHVNPWTITHRSFFNNVHKIAQAAIPLTLLVCVLTTSPEARLFWVIFFNAQILSQEFHKLSHTVNPPPWASWLQARNVILSRKEHGLHHSSPFESHYCILTGMCNKPLDRFNVWRRLEAIVYRVNGVEPNCWKEDPSLKKFSL 328          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: A0A0G4F217_VITBC (Lipid_desat domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F217_VITBC)

HSP 1 Score: 211 bits (536), Expect = 1.290e-63
Identity = 111/238 (46.64%), Postives = 150/238 (63.03%), Query Frame = 1
Query:    1 KAPKLVITGDTIEEEPHMVVTVVATFALATFVLLRAAV-EASTPLMGFESVAAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLPLLALVALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWKLDHNIKNQALRMM 711
            K P+L++ GD+ +  P+  +    T ALA   + +A V +AS P +    V  A   LLF D F+G+FH+ VDNYGN +TPVFGSVIE FQGHH  PWTIT R FANNV+KICYGVL ++A   ++   P        F ++ VM+QE HK+SHM  PP  V+ LQ  G++L R+ HG HHS PF+ HY I+ G  N  +D S +FRL+E  IYK  G   N+WKLD  ++ + + M+
Sbjct:  110 KDPQLIVEGDSTQVTPYQQLVTYGTLALALAAIAQALVSDASNPALMSLMVPFA---LLFGDLFSGVFHWAVDNYGNKNTPVFGSVIEGFQGHHKYPWTITYRPFANNVYKICYGVLLIMATTFILQAPPAVRVFMTVFGLSQVMAQEFHKYSHMTKPPIIVQRLQGMGLMLPRKEHGLHHSEPFEGHYSILFGWFNPLLDHSQVFRLMERAIYKWNGHMPNSWKLDERLRQEQVDMI 344          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: K8YWU6_NANGC (Lipid_desat domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWU6_NANGC)

HSP 1 Score: 206 bits (525), Expect = 3.500e-63
Identity = 100/169 (59.17%), Postives = 123/169 (72.78%), Query Frame = 1
Query:  169 LLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLP-LLALVALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWK 672
            +LF+DFF+GIFH+ VDNYGNG TPV G+VIEAFQGHHD+PWTIT R F+NNVHKI    +P +LA+VAL    P+ +  A  F    V+SQE HK SH+  PPA    LQD G+I+SR+ HGQHHSSPF+ +YCI+TG CN  +D+SG FR LE  +Y  TGV  N WK
Sbjct:   58 VLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAVVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWK 226          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: W7U0R7_9STRA (Kua-ubiquitin conjugating enzyme hybrid, localization n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0R7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 6.360e-62
Identity = 113/231 (48.92%), Postives = 144/231 (62.34%), Query Frame = 1
Query:    7 PKLVITGDTIEEE--------PHMVVTVVATFALATFVLLRAAVEASTPLMGFESVAAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKICYGVLP-LLALVALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWK 672
            P +V  GD +E           H +VT+ A   +A+       V      M   + A ++   LF+DFF+GIFH+ VDNYGNG TPV G+VIEAFQGHHD+PWTIT R F+NNVHKI    +P +LA+VAL    P+ +  A  F    V+SQE HK SH+  PPA    LQD G+I+SR+ HGQHHSSPF+ +YCI+TG CN  +D+SG FR LE  +Y  TGV  N WK
Sbjct:  111 PVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSV---LFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWK 338          
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Match: A0A7S2K3J7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3J7_9STRA)

HSP 1 Score: 204 bits (519), Expect = 4.250e-61
Identity = 111/249 (44.58%), Postives = 151/249 (60.64%), Query Frame = 1
Query:    1 KAPKLVITGDTIEEEPHMVVTVVATFALATFVLLRAAVEA-----------STPLMGFESVAAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTITSRGFANNVHKIC--YGVLPLLALVALVGPGPVTSSSAVAFLVASVMSQELHKFSHMISPPAP--VRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMDKSGIFRLLENIIYKATGVESNTWKLDHNIKNQAL 702
            K  ++V+ GD++E +P  V  V AT       +  AA  A           STPL   ES  A +   + AD  +GI H+ VDNYGNGSTPV G++I AFQGHH +PWTIT RGF NNV+K+C  +G+  +LAL  L G  P+ S     F    ++SQELHK+SHM     P  V  +QDAG+ + R  H  HH +P++ +YCIV+G CN  +D+SG FR LE+++Y   GVESN+WKLD  ++ + L
Sbjct:   99 KEARVVVEGDSLETQPWQVALVSATM------MFHAAFSAYNVHEVIGQTHSTPLGLTESAVAIVSSWVMADLGSGILHWSVDNYGNGSTPVMGNIIAAFQGHHSAPWTITERGFCNNVYKLCTPFGIPTVLALSYLTGFAPLPSLFVAVFCAMEILSQELHKWSHMTKKEVPGWVNWMQDAGLSIPRTDHANHHKAPYEGNYCIVSGVCNPALDQSGFFRRLEHLVYNINGVESNSWKLDGALRAKTL 341          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFV9_9PHAE8.810e-7954.27Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZEB7_9STRA1.090e-7853.91Kua-ubiquitin conjugating enzyme hybrid localizati... [more]
D7G5G4_ECTSI1.540e-7555.30Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A0G4GQ94_9ALVE6.600e-7048.55Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A6S9FHC8_HETAK6.820e-6848.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W8D5_9STRA2.060e-6445.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4F217_VITBC1.290e-6346.64Lipid_desat domain-containing protein n=2 Tax=Vitr... [more]
K8YWU6_NANGC3.500e-6359.17Lipid_desat domain-containing protein n=2 Tax=Mono... [more]
W7U0R7_9STRA6.360e-6248.92Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
A0A7S2K3J7_9STRA4.250e-6144.58Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56contigP-wetherbeei_contig56:4957..6127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G5G4
Preferred nameTMEM189
PFAMsTMEM189_B_dmain,UQ_con
Model size714
Max annot lvl2759|Eukaryota
KEGG koko:K10704,ko:K20417,ko:K20656
KEGG Pathwayko04624,map04624
Hectar predicted targeting categorysignal anchor
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016567,GO:0016705,GO:0016740,GO:0019538,GO:0019637,GO:0019752,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031371,GO:0031625,GO:0031967,GO:0031969,GO:0031975,GO:0032446,GO:0032787,GO:0032991,GO:0033554,GO:0033559,GO:0034976,GO:0035370,GO:0036211,GO:0036503,GO:0042170,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046471,GO:0046486,GO:0050896,GO:0051603,GO:0051716,GO:0052637,GO:0055114,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0072330,GO:0080132,GO:0080167,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1902494,GO:1990234
Exons3
Evalue2.52e-76
EggNOG OGsKOG3011@1|root,KOG3011@2759|Eukaryota
Ec32 ortholog descriptionB-domain containing protein Kua
Ec32 orthologEc-22_000510.1
EC1.14.19.43
Descriptionprotein ubiquitination
Cds size714
COG categoryM
BRITEko00000,ko00001,ko01000,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.0611901-CDS-P-wetherbeei_contig56:4956..51151683186833.0611901-CDS-P-wetherbeei_contig56:4956..5115Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56 4957..5115 -
1683186833.0713098-CDS-P-wetherbeei_contig56:5367..56521683186833.0713098-CDS-P-wetherbeei_contig56:5367..5652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56 5368..5652 -
1683186833.079202-CDS-P-wetherbeei_contig56:5857..61271683186833.079202-CDS-P-wetherbeei_contig56:5857..6127Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56 5858..6127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56.3.1prot_P-wetherbeei_contig56.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56 4957..6127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56.3.1

>prot_P-wetherbeei_contig56.3.1 ID=prot_P-wetherbeei_contig56.3.1|Name=mRNA_P-wetherbeei_contig56.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
KAPKLVITGDTIEEEPHMVVTVVATFALATFVLLRAAVEASTPLMGFESV
AAAIGGLLFADFFTGIFHFLVDNYGNGSTPVFGSVIEAFQGHHDSPWTIT
SRGFANNVHKICYGVLPLLALVALVGPGPVTSSSAVAFLVASVMSQELHK
FSHMISPPAPVRALQDAGVILSRRAHGQHHSSPFQDHYCIVTGHCNEFMD
KSGIFRLLENIIYKATGVESNTWKLDHNIKNQALRMM*
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mRNA from alignment at P-wetherbeei_contig56:4957..6127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56.3.1 ID=mRNA_P-wetherbeei_contig56.3.1|Name=mRNA_P-wetherbeei_contig56.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1171bp|location=Sequence derived from alignment at P-wetherbeei_contig56:4957..6127- (Phaeothamnion wetherbeei SAG_119_79)
AAGGCACCAAAGCTCGTCATCACCGGCGACACCATCGAGGAAGAGCCCCA CATGGTCGTGACAGTGGTTGCAACGTTCGCCCTCGCCACGTTCGTTCTCC TGCGGGCAGCGGTTGAAGCATCGACGCCCTTGATGGGCTTTGAGTCCGTC GCGGCCGCTATCGGTGGGCTCCTCTTCGCGGACTTCTTCACGGGCATCTT CCACTTTCTGGTGGACAACTACGGCAACGGGTCGACACCGGTCTTCGGCT CGGTGATCGAAGCTTTCCAGGTGGGTGAATGATAGAAGAGAGGGAAAGGC ATCTTCTCCTTACAAGAATGTGCGTCCCACATATCTCTTGCGTTGCCTTA GAACGGCCTGTTTGCATTGTATCCCCCGTTCCTCCACAATTCAAAGTACT TGATTTAACGGCGCTTTACCTTTTCCTCTCTCTTCCGCTCTCTCTGTTCT GCCCTCTCTTTTCCTCATAAAACAGGGTCACCACGACAGCCCGTGGACCA TCACCTCGCGCGGCTTCGCCAACAATGTGCATAAGATCTGCTACGGCGTC CTGCCACTGCTGGCGCTTGTCGCCCTCGTGGGGCCCGGCCCAGTCACGTC GTCGTCCGCCGTCGCCTTCCTCGTGGCGAGCGTCATGAGCCAGGAGCTGC ACAAGTTCTCCCATATGATCTCCCCGCCGGCTCCGGTGCGTGCGCTGCAG GACGCCGGCGTCATCCTGTCGCGGCGGGCGCACGGCCAGCACCACTCGTC GCCGTTCCAGGTGAGAGATATTGGAAGGCAAGAATTTAGAAGAACGAGAG GAATAATTCATTTTCAAACTCAAGGGGCAGAAAGGGAATTTGAAGCTATC CATCAGGATATTTCACAAGCACCGATGTTGCCAAGTTAGTGCCTTTTCTG CCCGTCATAGTTCTGATGGTTTTCTGTGCGCTCGCCAACTCGGTGTCTTG CTCAACTCAAAGCGCCTTTCTCTCTTTCCTCTGTCCACCCGTTTCGTTCT ACCCTCTTGCAGGATCACTACTGCATCGTGACAGGGCACTGCAATGAGTT CATGGACAAGAGCGGCATATTCCGATTGCTCGAAAATATCATTTACAAGG CAACCGGCGTCGAATCGAACACATGGAAGCTTGACCACAACATTAAAAAC CAGGCGCTCCGGATGATGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56:4957..6127-

>mRNA_P-wetherbeei_contig56.3.1 ID=mRNA_P-wetherbeei_contig56.3.1|Name=mRNA_P-wetherbeei_contig56.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig56:4957..6127- (Phaeothamnion wetherbeei SAG_119_79)
AAGGCACCAAAGCTCGTCATCACCGGCGACACCATCGAGGAAGAGCCCCA
CATGGTCGTGACAGTGGTTGCAACGTTCGCCCTCGCCACGTTCGTTCTCC
TGCGGGCAGCGGTTGAAGCATCGACGCCCTTGATGGGCTTTGAGTCCGTC
GCGGCCGCTATCGGTGGGCTCCTCTTCGCGGACTTCTTCACGGGCATCTT
CCACTTTCTGGTGGACAACTACGGCAACGGGTCGACACCGGTCTTCGGCT
CGGTGATCGAAGCTTTCCAGGGTCACCACGACAGCCCGTGGACCATCACC
TCGCGCGGCTTCGCCAACAATGTGCATAAGATCTGCTACGGCGTCCTGCC
ACTGCTGGCGCTTGTCGCCCTCGTGGGGCCCGGCCCAGTCACGTCGTCGT
CCGCCGTCGCCTTCCTCGTGGCGAGCGTCATGAGCCAGGAGCTGCACAAG
TTCTCCCATATGATCTCCCCGCCGGCTCCGGTGCGTGCGCTGCAGGACGC
CGGCGTCATCCTGTCGCGGCGGGCGCACGGCCAGCACCACTCGTCGCCGT
TCCAGGATCACTACTGCATCGTGACAGGGCACTGCAATGAGTTCATGGAC
AAGAGCGGCATATTCCGATTGCTCGAAAATATCATTTACAAGGCAACCGG
CGTCGAATCGAACACATGGAAGCTTGACCACAACATTAAAAACCAGGCGC
TCCGGATGATGTAG
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