mRNA_P-wetherbeei_contig5594.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5594.1.1
Unique NamemRNA_P-wetherbeei_contig5594.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5594.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5594contigP-wetherbeei_contig5594:389..1024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.2741632-CDS-P-wetherbeei_contig5594:388..5361683186832.2741632-CDS-P-wetherbeei_contig5594:388..536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5594 389..536 +
1683186832.283077-CDS-P-wetherbeei_contig5594:867..10221683186832.283077-CDS-P-wetherbeei_contig5594:867..1022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5594 868..1022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5594.1.1prot_P-wetherbeei_contig5594.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5594 389..1022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5594.1.1

>prot_P-wetherbeei_contig5594.1.1 ID=prot_P-wetherbeei_contig5594.1.1|Name=mRNA_P-wetherbeei_contig5594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
DAVSKANSVALTQSKLEELESRLSAVEEQRCAACVACNRLANDLLAASED
PMHLRGRLNLLRHLLRNQIKRYTHYTSSILSERLLAFDAAEAITGQRGID
A
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mRNA from alignment at P-wetherbeei_contig5594:389..1024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5594.1.1 ID=mRNA_P-wetherbeei_contig5594.1.1|Name=mRNA_P-wetherbeei_contig5594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig5594:389..1024+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCCGTTTCCAAGGCAAACAGCGTCGCCCTCACTCAATCAAAACTCGA
GGAACTCGAGAGCCGGCTTAGCGCAGTTGAGGAGCAGCGCTGCGCGGCGT
GCGTAGCCTGCAACCGTCTCGCGAACGATCTCTTGGCGGCTTCCGAAGGT
AAATTATTGAAAAATGTTTCCCATTCTCTATTTTCTTGTCCTCCTGTTTT
TTCGCAGTCGTTGTTGTGTTGCGAGATATGAAAGCGCGCAGGGTGAAATA
GCTTCAGGAAACGCGTCGCCGCCACCGTTCGCCAGCCAACAACGTTTTTT
ACCTCCTTTCTGAAGAGGGGGCCGCCCTCCTTCCAGATCAACCAATCAAT
CAAACAAAAACCTAGCTTTGACATCGCACCCTTGCCTCTCACCTTCATGA
CCTTCAACCCCTGTCATATTGCACTCCGCCCTTGCTCCGTCCCCTGCCAA
AACCTCCACTGTCCTTGGATTGAGCGCAGACCCGATGCACCTTCGCGGCC
GCCTGAACCTCCTCCGCCACCTGCTCCGCAACCAGATCAAGCGCTACACG
CACTACACGTCCTCCATCCTCTCGGAGCGGCTCCTGGCCTTCGACGCCGC
GGAGGCCATCACGGGCCAGCGGGGCATCGATGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5594:389..1024+

>mRNA_P-wetherbeei_contig5594.1.1 ID=mRNA_P-wetherbeei_contig5594.1.1|Name=mRNA_P-wetherbeei_contig5594.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig5594:389..1024+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCCGTTTCCAAGGCAAACAGCGTCGCCCTCACTCAATCAAAACTCGA
GGAACTCGAGAGCCGGCTTAGCGCAGTTGAGGAGCAGCGCTGCGCGGCGT
GCGTAGCCTGCAACCGTCTCGCGAACGATCTCTTGGCGGCTTCCGAAGAC
CCGATGCACCTTCGCGGCCGCCTGAACCTCCTCCGCCACCTGCTCCGCAA
CCAGATCAAGCGCTACACGCACTACACGTCCTCCATCCTCTCGGAGCGGC
TCCTGGCCTTCGACGCCGCGGAGGCCATCACGGGCCAGCGGGGCATCGAT
GCC
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