mRNA_P-wetherbeei_contig5591.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5591.1.1
Unique NamemRNA_P-wetherbeei_contig5591.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5591.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5591contigP-wetherbeei_contig5591:528..2063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categoryother localisation
Exons2
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.975865-UTR-P-wetherbeei_contig5591:527..6011683186831.975865-UTR-P-wetherbeei_contig5591:527..601Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5591 528..601 -
1683186832.0005093-UTR-P-wetherbeei_contig5591:2044..20631683186832.0005093-UTR-P-wetherbeei_contig5591:2044..2063Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5591 2045..2063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.984533-CDS-P-wetherbeei_contig5591:601..6121683186831.984533-CDS-P-wetherbeei_contig5591:601..612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5591 602..612 -
1683186831.992598-CDS-P-wetherbeei_contig5591:1617..20441683186831.992598-CDS-P-wetherbeei_contig5591:1617..2044Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5591 1618..2044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5591.1.1prot_P-wetherbeei_contig5591.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5591 602..2044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5591.1.1

>prot_P-wetherbeei_contig5591.1.1 ID=prot_P-wetherbeei_contig5591.1.1|Name=mRNA_P-wetherbeei_contig5591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MVDEGLDKVCPFPVPFSASLSISVFVSISVSFHCSGLIIHFLVALPRYRV
KGAPAASSSGIAAAHCHRIQTCRLVGYPMALAWRPDVWLSLRVSHAENLV
GRRQKLADRPEAARRDSRALLLPTLTGIFSAGYWRRAIACFGGDE*
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mRNA from alignment at P-wetherbeei_contig5591:528..2063-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5591.1.1 ID=mRNA_P-wetherbeei_contig5591.1.1|Name=mRNA_P-wetherbeei_contig5591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1536bp|location=Sequence derived from alignment at P-wetherbeei_contig5591:528..2063- (Phaeothamnion wetherbeei SAG_119_79)
CCCGCAGGAGCTGGAGCGGATGGTGGACGAGGGACTCGACAAGGTGTGTC
CCTTTCCTGTTCCATTTTCCGCTTCTCTGTCTATTTCCGTTTTCGTTTCT
ATTTCTGTTTCTTTTCACTGTTCTGGTTTGATAATCCACTTTCTGGTGGC
TCTACCTCGTTATCGCGTGAAGGGGGCCCCGGCTGCATCATCATCAGGCA
TAGCAGCGGCTCACTGCCACCGAATACAGACATGTCGGCTTGTTGGTTAC
CCAATGGCTCTTGCGTGGCGGCCGGATGTCTGGCTATCACTGCGGGTTTC
TCATGCAGAAAACCTCGTTGGCCGACGCCAAAAGTTGGCAGACAGGCCAG
AAGCGGCAAGACGGGATTCTCGAGCCCTTCTCTTGCCAACGCTTACTGGT
ATCTTTTCTGCCGGCTACTGGCGGCGCGCCATCGCCTGCTTTGGAGGTAC
GCCGCCATCTGGGACTGGTCGTCGACCTCACCTGCCAGCTGGAGACGCCC
CGGAATATTTCAGGGGCCGCACCTGCTGGCAGGTCATATTTCCGACGAGC
CTCAATTTGTGGCATGCTTTGGATGCCGGTGCCGGCGCGCCTCCCAACTC
GGCGGGGAATGTGCTTTTAACTGGTACGAGTTGGCGGGTAAAGGGGAATG
GGATTGTTCTGGTTTTTCCTTCGGCACGCTTGTAGACGAGGACGCCGGTG
GTTGTTGTTGGCTGCGCCAGGGCCCATGCGTGGTGGCCGGACGCCTGACG
TTTATGTGCGTACTTTCTTGGGCGGGCTGGATAAGCTTTTCAGTTGGTGC
CGAAGGTTGCCACGGCTGGCCAGGAAAGGTCTGGACGAGAATTTCGGGCC
CTCTTTCTCGCCAACGCGTACTGACGTTTTTTTCGCCGGCTTCTGCTGGC
GCGCCGTCGCCTGCTGTCGAGGTATGCGACAAGCTGAGACTCGTCGAGCT
CACCTGCGGATGACGGCCCGGAATGTTCTGGAGCCGCCCCTGCTGGCAGA
TTTGATTGCCGATCAGTCTTACTTTGTGGCGGACTTTGGATGCCGGCTCG
GGCGCTTCCGGAACTCGGCGGGGAATGTGCATTGGCTAGAGAAGTTGACG
GGAAGTAGGAATGGGTTGGTTGTGCTTTTTCCTCTGTCCGCTTGTAGACA
GGGGCGCCGATTTATTAGGATTGGGCTATTGTTTTCTGTTCGTAGTGATT
GCGGGCTATAACTGGTAGCTTGCCGTCCAATTTTTCAGGACAAAACCGCC
AGTTCTACCATGGAATTAATATTGATATACTCTGGGGACCCGCCCTTGCC
ATAGCTGCTGTGCTGGCATGCATCAATCAAACGTTCCGTTCCCTGACGCT
TTGCCGCTGATCCGCTCCGCTGCCGCTGTTCTCCTCGCGCCGTCAACTGC
TGCCAACGACCTGCGTGCGCCGGCAAACGGTTTCCCCGCGAGCAATGGCA
GGTGATGAATGAGGGCCTGCGGAACGAGATCATGGTGTCAGTGGACGAGC
AGGCGTCGGTGCAGCAGATGCGGGCCGAGGCATCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5591:528..2063-

>mRNA_P-wetherbeei_contig5591.1.1 ID=mRNA_P-wetherbeei_contig5591.1.1|Name=mRNA_P-wetherbeei_contig5591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig5591:528..2063- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGACGAGGGACTCGACAAGGTGTGTCCCTTTCCTGTTCCATTTTC
CGCTTCTCTGTCTATTTCCGTTTTCGTTTCTATTTCTGTTTCTTTTCACT
GTTCTGGTTTGATAATCCACTTTCTGGTGGCTCTACCTCGTTATCGCGTG
AAGGGGGCCCCGGCTGCATCATCATCAGGCATAGCAGCGGCTCACTGCCA
CCGAATACAGACATGTCGGCTTGTTGGTTACCCAATGGCTCTTGCGTGGC
GGCCGGATGTCTGGCTATCACTGCGGGTTTCTCATGCAGAAAACCTCGTT
GGCCGACGCCAAAAGTTGGCAGACAGGCCAGAAGCGGCAAGACGGGATTC
TCGAGCCCTTCTCTTGCCAACGCTTACTGGTATCTTTTCTGCCGGCTACT
GGCGGCGCGCCATCGCCTGCTTTGGAGGTGATGAATGA
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