mRNA_P-wetherbeei_contig55902.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55902.1.1
Unique NamemRNA_P-wetherbeei_contig55902.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55902.1.1 vs. uniprot
Match: D7G3J8_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3J8_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.070e-5
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 EAQAVLGSAVAIQEKALAPDHPAVASSLLPLSEIYRKQGRLEDAEKLFKRA 153
            +A+ ++  AV IQ + L   HPAVASS+  ++E+YR+QGRL +AE LF+RA
Sbjct:  545 KAEEMIKRAVLIQGRHLGLRHPAVASSMRAMAELYRRQGRLAEAEPLFRRA 595
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BLAST of mRNA_P-wetherbeei_contig55902.1.1 vs. uniprot
Match: A0A8C2EF25_CYPCA (Kinesin light chain n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2EF25_CYPCA)

HSP 1 Score: 47.4 bits (111), Expect = 9.530e-5
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 EAQAVLGSAVAIQEKALAPDHPAVASSLLPLSEIYRKQGRLEDAEKLFKRA 153
            EA  +L  A+AI+EK L  DHPAVA++L  L+ +Y K+G+ ++AE L KRA
Sbjct:   17 EAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKHKEAEPLCKRA 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55902.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3J8_ECTSI1.070e-550.98TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8C2EF25_CYPCA9.530e-550.98Kinesin light chain n=1 Tax=Cyprinus carpio TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55902contigP-wetherbeei_contig55902:12..164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121396.KB893072_gene1254
PFAMsNB-ARC,Peptidase_C14,TIR_2,TPR_10,TPR_12,TPR_7,TPR_8
Model size153
Max annot lvl2|Bacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000266
EggNOG OGsCOG0457@1|root,COG3903@1|root,COG0457@2|Bacteria,COG3903@2|Bacteria
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-19_004920.1
DescriptionADP binding
Cds size153
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.9282465-CDS-P-wetherbeei_contig55902:11..1641683186831.9282465-CDS-P-wetherbeei_contig55902:11..164Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55902 12..164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55902.1.1prot_P-wetherbeei_contig55902.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55902 12..164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55902.1.1

>prot_P-wetherbeei_contig55902.1.1 ID=prot_P-wetherbeei_contig55902.1.1|Name=mRNA_P-wetherbeei_contig55902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
EAQAVLGSAVAIQEKALAPDHPAVASSLLPLSEIYRKQGRLEDAEKLFKR
A
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mRNA from alignment at P-wetherbeei_contig55902:12..164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55902.1.1 ID=mRNA_P-wetherbeei_contig55902.1.1|Name=mRNA_P-wetherbeei_contig55902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig55902:12..164+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCCCAGGCGGTGCTCGGAAGCGCCGTCGCAATCCAGGAGAAGGCGCT
CGCGCCCGACCATCCCGCCGTCGCGTCGAGCCTGCTTCCCCTCTCGGAGA
TCTATCGCAAGCAAGGCCGCCTGGAAGATGCGGAAAAACTTTTCAAGCGC
GCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55902:12..164+

>mRNA_P-wetherbeei_contig55902.1.1 ID=mRNA_P-wetherbeei_contig55902.1.1|Name=mRNA_P-wetherbeei_contig55902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig55902:12..164+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGCCCAGGCGGTGCTCGGAAGCGCCGTCGCAATCCAGGAGAAGGCGCT
CGCGCCCGACCATCCCGCCGTCGCGTCGAGCCTGCTTCCCCTCTCGGAGA
TCTATCGCAAGCAAGGCCGCCTGGAAGATGCGGAAAAACTTTTCAAGCGC
GCG
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