mRNA_P-wetherbeei_contig55896.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55896.1.1
Unique NamemRNA_P-wetherbeei_contig55896.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55896.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55896contigP-wetherbeei_contig55896:2..157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog670307.HYPDE_29928
Model size156
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00197,RC00323
KEGG koko:K00201
KEGG ReactionR03015,R08060
KEGG Pathwayko00680,ko01100,ko01120,ko01200,map00680,map01100,map01120,map01200
KEGG ModuleM00567
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000202
EggNOG OGsCOG1029@1|root,COG1029@2|Bacteria,1R64R@1224|Proteobacteria,2TVI1@28211|Alphaproteobacteria
EC1.2.7.12
DescriptionFormylmethanofuran dehydrogenase, subunit B
Cds size156
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.414105-CDS-P-wetherbeei_contig55896:1..1571683186831.414105-CDS-P-wetherbeei_contig55896:1..157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55896 2..157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55896.1.1prot_P-wetherbeei_contig55896.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55896 2..157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55896.1.1

>prot_P-wetherbeei_contig55896.1.1 ID=prot_P-wetherbeei_contig55896.1.1|Name=mRNA_P-wetherbeei_contig55896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
PLNGNSQQSAPPTAVCPYCALLCDDLVLAPKPNQGFTVTRNGCRRSNQAF
AR
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mRNA from alignment at P-wetherbeei_contig55896:2..157-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55896.1.1 ID=mRNA_P-wetherbeei_contig55896.1.1|Name=mRNA_P-wetherbeei_contig55896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig55896:2..157- (Phaeothamnion wetherbeei SAG_119_79)
CCACTCAACGGTAATTCCCAGCAGTCCGCACCACCAACAGCGGTCTGTCC
CTATTGCGCGCTGCTGTGCGACGACCTTGTACTTGCACCCAAGCCCAATC
AGGGCTTCACCGTCACACGCAATGGCTGTCGCCGCTCAAACCAGGCTTTC
GCTCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55896:2..157-

>mRNA_P-wetherbeei_contig55896.1.1 ID=mRNA_P-wetherbeei_contig55896.1.1|Name=mRNA_P-wetherbeei_contig55896.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig55896:2..157- (Phaeothamnion wetherbeei SAG_119_79)
CCACTCAACGGTAATTCCCAGCAGTCCGCACCACCAACAGCGGTCTGTCC
CTATTGCGCGCTGCTGTGCGACGACCTTGTACTTGCACCCAAGCCCAATC
AGGGCTTCACCGTCACACGCAATGGCTGTCGCCGCTCAAACCAGGCTTTC
GCTCGT
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