mRNA_P-wetherbeei_contig55863.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55863.1.1
Unique NamemRNA_P-wetherbeei_contig55863.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55863.1.1 vs. uniprot
Match: A0A6J5MT61_9CAUD (Uncharacterized protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5MT61_9CAUD)

HSP 1 Score: 184 bits (466), Expect = 2.110e-54
Identity = 106/173 (61.27%), Postives = 128/173 (73.99%), Query Frame = 1 
Query:    1 VSANNMSISNCLFVGNFLSIASAFTVAAAADFKIDNCGFRDTSAVLGFLSIVTTTVSLNSDGLTYTNNSRKSDATTTPGPDVVIANTMSRLKVNGNKSVHTVASNNTAALIEHGALVMTDAEVIGNYVYSVNTDTATGGILVKTTATTGSGIVAHNRVRTLDTAAAILVTVAA 519
            VSA+N+SISNC F+GNFLSI S FTVAAAA F IDNC F DTSA+LGFLS+V TTVS NSD L  +N   KSDATT     +V+ NTM+ L ++ N  V TVA NN +  + H ALVMT A + GN +YSVNTD+ATG  LV T+ATTGSGI+ +N VR LD AAA+++T AA
Sbjct:  128 VSADNVSISNCRFIGNFLSITSCFTVAAAAYFTIDNCAFTDTSAILGFLSVVKTTVSTNSDFLQVSNCFIKSDATTKSVAPIVVLNTMTGLTLSDNVVVQTVAQNNVSQFLSHAALVMTAALISGNKIYSVNTDSATGAFLVTTSATTGSGIIQNNVVRGLDVAAALMITAAA 300
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BLAST of mRNA_P-wetherbeei_contig55863.1.1 vs. uniprot
Match: A0A6H1ZXH4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6H1ZXH4_9ZZZZ)

HSP 1 Score: 87.0 bits (214), Expect = 2.820e-17
Identity = 67/180 (37.22%), Postives = 100/180 (55.56%), Query Frame = 1 
Query:    1 VSANNMSISNCLFVGNFLSIASAFTVAAAADFKIDNCGFRDTSAVLGFLSIVTTTVSLN-SDGLTYTNNSRKSDATTTPGPDVVIANTMSRLKVNGNKSVHTV--------ASNNTAALIEHGALVMT-DAEVIGNYVYSVNTDTATGGILVKTTATTGSGIVAHNRVRTLDTAAAILVT 510
            V+A +++ISN +F  NF  I S FT+AAA +F +DNC F+ T++ + FL IV T  +   ++GLT  N            PD+    T+S +K++G+ +  T+         +NN AAL+    +      ++  N VY +NTDTATG IL+ T     SGIVA N V+  DT A +L+T
Sbjct:  121 VTAVDITISNLIFTANFADIVSVFTLAAAQNFTLDNCFFKSTASAMNFLYIVDTDATTGRANGLTIKNCKWIE-------PDIA---TLSMVKLDGDMTNITIHNNYVDIGVNNNKAALMAIATIKSVFSLQMTDNLVYRLNTDTATGAILLSTDQADNSGIVARNIVQHADTFAELLIT 290
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BLAST of mRNA_P-wetherbeei_contig55863.1.1 vs. uniprot
Match: A0A6J5SP70_9CAUD (Uncharacterized protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5SP70_9CAUD)

HSP 1 Score: 82.0 bits (201), Expect = 2.070e-15
Identity = 63/163 (38.65%), Postives = 92/163 (56.44%), Query Frame = 1 
Query:    1 VSANNMSISNCLFVGNFLSIASAFTVAAAADFKIDNCGFRDTSAVLGFLSIVTTTVSLNS-DGLTYTNNSRKSDATTTPGPDVVIANTMSRLKVNGNKSVHTVASNNTAALIEHGALVMTDAEVIGNYVYSVNTDTATGGILVKTTATTGSGIVAHNRVRTLD 486
            VSA N+S+ NCLFV NFL+IAS FT++ AA+F +  C FRDTSA L F ++V +T + N+ DGL   +N  +S  TT     V+ AN ++ L+++ N  + T+++ + A L    A V+T   +  N     NT T     +V    TT S I+  N    LD
Sbjct:  129 VSAANISVQNCLFVANFLTIASCFTLSTAANFTLQGCEFRDTSAALNFANVVKSTGAANTVDGLYVADNFYQSIGTTF-NTLVLTANDINALQIHSN-FIATISTGDIATLCVVSAGVLTGGFITRNNTKRKNTTTTNA--MVNVGGTTSSVILRDNFASCLD 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55863.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6J5MT61_9CAUD2.110e-5461.27Uncharacterized protein n=1 Tax=uncultured Caudovi... [more]
A0A6H1ZXH4_9ZZZZ2.820e-1737.22Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6J5SP70_9CAUD2.070e-1538.65Uncharacterized protein n=1 Tax=uncultured Caudovi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55863contigP-wetherbeei_contig55863:3..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size519
Hectar predicted targeting categorysignal peptide
Exons1
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.1363559-UTR-P-wetherbeei_contig55863:2..171683186831.1363559-UTR-P-wetherbeei_contig55863:2..17Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55863 3..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.1492233-CDS-P-wetherbeei_contig55863:17..5211683186831.1492233-CDS-P-wetherbeei_contig55863:17..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55863 18..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55863.1.1prot_P-wetherbeei_contig55863.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55863 18..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55863.1.1

>prot_P-wetherbeei_contig55863.1.1 ID=prot_P-wetherbeei_contig55863.1.1|Name=mRNA_P-wetherbeei_contig55863.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MSISNCLFVGNFLSIASAFTVAAAADFKIDNCGFRDTSAVLGFLSIVTTT
VSLNSDGLTYTNNSRKSDATTTPGPDVVIANTMSRLKVNGNKSVHTVASN
NTAALIEHGALVMTDAEVIGNYVYSVNTDTATGGILVKTTATTGSGIVAH
NRVRTLDTAAAILVTVAA
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mRNA from alignment at P-wetherbeei_contig55863:3..521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55863.1.1 ID=mRNA_P-wetherbeei_contig55863.1.1|Name=mRNA_P-wetherbeei_contig55863.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55863:3..521+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTCGGCAAACAATATGTCGATCAGCAATTGCCTGTTCGTCGGCAACTT
CCTGTCGATTGCCTCGGCCTTCACGGTTGCGGCCGCGGCGGATTTCAAGA
TCGACAACTGCGGATTCCGCGACACTTCGGCGGTCCTCGGCTTCCTGTCG
ATCGTCACCACCACGGTTTCGCTCAACTCTGACGGCCTGACCTATACCAA
CAACAGCCGCAAGTCGGATGCAACCACCACGCCGGGACCAGATGTCGTCA
TCGCAAACACGATGAGCCGACTGAAAGTCAACGGCAACAAGTCGGTTCAT
ACCGTGGCGTCGAACAACACGGCGGCACTGATCGAGCATGGCGCTCTCGT
CATGACGGACGCGGAAGTCATCGGCAACTACGTCTATTCGGTCAATACCG
ACACGGCGACCGGCGGCATCCTGGTCAAGACCACGGCGACGACGGGCTCG
GGCATTGTTGCCCATAACCGGGTTCGAACGCTGGACACCGCGGCGGCCAT
TCTGGTGACTGTGGCGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55863:3..521+

>mRNA_P-wetherbeei_contig55863.1.1 ID=mRNA_P-wetherbeei_contig55863.1.1|Name=mRNA_P-wetherbeei_contig55863.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig55863:3..521+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATCAGCAATTGCCTGTTCGTCGGCAACTTCCTGTCGATTGCCTC
GGCCTTCACGGTTGCGGCCGCGGCGGATTTCAAGATCGACAACTGCGGAT
TCCGCGACACTTCGGCGGTCCTCGGCTTCCTGTCGATCGTCACCACCACG
GTTTCGCTCAACTCTGACGGCCTGACCTATACCAACAACAGCCGCAAGTC
GGATGCAACCACCACGCCGGGACCAGATGTCGTCATCGCAAACACGATGA
GCCGACTGAAAGTCAACGGCAACAAGTCGGTTCATACCGTGGCGTCGAAC
AACACGGCGGCACTGATCGAGCATGGCGCTCTCGTCATGACGGACGCGGA
AGTCATCGGCAACTACGTCTATTCGGTCAATACCGACACGGCGACCGGCG
GCATCCTGGTCAAGACCACGGCGACGACGGGCTCGGGCATTGTTGCCCAT
AACCGGGTTCGAACGCTGGACACCGCGGCGGCCATTCTGGTGACTGTGGC
GGCT
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