mRNA_P-wetherbeei_contig55812.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55812.1.1
Unique NamemRNA_P-wetherbeei_contig55812.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55812.1.1 vs. uniprot
Match: UPI0015D091F4 (Ig-like domain-containing protein n=1 Tax=Marinicella rhabdoformis TaxID=2580566 RepID=UPI0015D091F4)

HSP 1 Score: 53.1 bits (126), Expect = 1.600e-5
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:    4 LQNPVGTQVTLV----GPNDYYGEFDSGPGQGARVTVTFDDLAGSLVGSNGLAGGTFLPTQTFASLLGGPVVGNWTLYVEDTAGGAPLGLASFRLDMVVVSSV 300
            +Q+P  TQV LV    G ND   +FD          V FDD  G+ +      GGT+ P+ + ++L+G  + GNWTL + D AGG    L S+ L++    +V
Sbjct:  707 IQSPAATQVELVSQVCGSND---DFD----------VNFDDNGGATLPCPYTDGGTYQPSGSLSTLVGEDLNGNWTLNINDAAGGDNGDLTSWGLEICYTPAV 796
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55812.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0015D091F41.600e-534.95Ig-like domain-containing protein n=1 Tax=Marinice... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55812contigP-wetherbeei_contig55812:2..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1004149.AFOE01000048_gene28
PFAMsCHU_C,P_proprotein,Reprolysin_4,TSP_3
Model size384
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000675
EggNOG OGsCOG4935@1|root,COG4935@2|Bacteria,4NEN7@976|Bacteroidetes,1HWMS@117743|Flavobacteriia
DescriptionMetallo-peptidase family M12B Reprolysin-like
Cds size384
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.8083956-CDS-P-wetherbeei_contig55812:1..3851683186830.8083956-CDS-P-wetherbeei_contig55812:1..385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55812 2..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55812.1.1prot_P-wetherbeei_contig55812.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55812 2..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55812.1.1

>prot_P-wetherbeei_contig55812.1.1 ID=prot_P-wetherbeei_contig55812.1.1|Name=mRNA_P-wetherbeei_contig55812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
KLQNPVGTQVTLVGPNDYYGEFDSGPGQGARVTVTFDDLAGSLVGSNGLA
GGTFLPTQTFASLLGGPVVGNWTLYVEDTAGGAPLGLASFRLDMVVVSSV
PEPSMPAMMGLGLCLMLVCRRRRARAA*
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mRNA from alignment at P-wetherbeei_contig55812:2..385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55812.1.1 ID=mRNA_P-wetherbeei_contig55812.1.1|Name=mRNA_P-wetherbeei_contig55812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig55812:2..385+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTGCAGAATCCGGTTGGCACACAGGTGACCCTGGTCGGCCCGAATGA
CTACTACGGCGAATTCGACAGCGGCCCGGGCCAGGGTGCGCGGGTGACCG
TCACCTTTGACGACCTGGCGGGTTCCCTGGTTGGCAGCAACGGGCTGGCG
GGGGGGACATTCCTGCCGACCCAGACCTTTGCTTCACTGCTGGGTGGGCC
GGTGGTCGGCAACTGGACCCTGTATGTCGAGGATACGGCCGGTGGCGCAC
CGTTGGGCCTGGCCAGCTTCAGGCTCGACATGGTGGTGGTGTCGAGTGTG
CCCGAACCTTCGATGCCGGCGATGATGGGGCTGGGCCTGTGCCTGATGCT
CGTCTGTCGCCGGCGCAGGGCACGGGCGGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55812:2..385+

>mRNA_P-wetherbeei_contig55812.1.1 ID=mRNA_P-wetherbeei_contig55812.1.1|Name=mRNA_P-wetherbeei_contig55812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig55812:2..385+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTGCAGAATCCGGTTGGCACACAGGTGACCCTGGTCGGCCCGAATGA
CTACTACGGCGAATTCGACAGCGGCCCGGGCCAGGGTGCGCGGGTGACCG
TCACCTTTGACGACCTGGCGGGTTCCCTGGTTGGCAGCAACGGGCTGGCG
GGGGGGACATTCCTGCCGACCCAGACCTTTGCTTCACTGCTGGGTGGGCC
GGTGGTCGGCAACTGGACCCTGTATGTCGAGGATACGGCCGGTGGCGCAC
CGTTGGGCCTGGCCAGCTTCAGGCTCGACATGGTGGTGGTGTCGAGTGTG
CCCGAACCTTCGATGCCGGCGATGATGGGGCTGGGCCTGTGCCTGATGCT
CGTCTGTCGCCGGCGCAGGGCACGGGCGGCGTGA
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