mRNA_P-wetherbeei_contig558.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig558.3.1
Unique NamemRNA_P-wetherbeei_contig558.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: A0A6V1U1G9_HETAK (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U1G9_HETAK)

HSP 1 Score: 154 bits (390), Expect = 7.260e-42
Identity = 69/85 (81.18%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHLR 255
            Y PFLCGEESFGTGSDH+REKDGLWAVLAWLS+LA  NPDPAAPLVGV D+VRAHWA YGRN Y RYD+E V  E AEAMM HLR
Sbjct:  783 YSPFLCGEESFGTGSDHIREKDGLWAVLAWLSVLAKHNPDPAAPLVGVEDIVRAHWAEYGRNFYARYDYEAVDLEAAEAMMDHLR 867          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: A0A6V1U5R2_HETAK (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U5R2_HETAK)

HSP 1 Score: 154 bits (388), Expect = 1.360e-41
Identity = 69/85 (81.18%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHLR 255
            Y PF+CGEESFGTGSDHVREKDGLWAVLAWLS+LA  NPDPAAPLVGV D+VRAHWA YGRN Y RYD+E V  E AEAMM HLR
Sbjct:  829 YTPFICGEESFGTGSDHVREKDGLWAVLAWLSVLAKHNPDPAAPLVGVEDIVRAHWAEYGRNFYARYDYEAVDLEAAEAMMDHLR 913          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: A0A7S2Y0U8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0U8_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.180e-41
Identity = 63/85 (74.12%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHLR 255
            Y PFLCGEESFGTGSDH+REKDG+WAVLAWLSILA +NPDP+ PLVGV D+VR HWA YGRN Y RYD+E V  + A  MM HLR
Sbjct:   10 YSPFLCGEESFGTGSDHIREKDGIWAVLAWLSILAKKNPDPSQPLVGVEDIVREHWAQYGRNFYTRYDYEEVDLKSANNMMDHLR 94          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: A0A835Z552_9STRA (Phosphoglucomutase, cytoplasmic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z552_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.840e-41
Identity = 68/83 (81.93%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    7 PFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHLR 255
            PFLCGEESFGTGSDHVREKDGLWAVLAWLSILA RN DP APLVGVGDVVR HWA +GRN Y RYD+EG G++GA AMM+ LR
Sbjct:  374 PFLCGEESFGTGSDHVREKDGLWAVLAWLSILAERNGDPGAPLVGVGDVVREHWARFGRNYYARYDYEGCGADGANAMMEALR 456          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: A0A7S3I4Z6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I4Z6_9SPIT)

HSP 1 Score: 134 bits (337), Expect = 9.160e-39
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMM 243
            Y PF+CGEESFGTG DHVREKDG++AVLAWL ILAA NPD + PL+GV D+ +AHWA YGRN Y RYD+EGV   GAE MM
Sbjct:   11 YTPFICGEESFGTGGDHVREKDGMFAVLAWLQILAAANPDESKPLIGVADIAKAHWAEYGRNYYARYDYEGVDKAGAEKMM 91          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: Q5K271_GUITH (Phosphoglucomutase (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=Q5K271_GUITH)

HSP 1 Score: 135 bits (341), Expect = 1.790e-38
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHL 252
            Y PFLCGEESFGTGS+H+REKDG+WAVLAWL ILA++NPD + PLV V D+VRAHW+ YGRN Y RYD+EGV    AE MMK++
Sbjct:   13 YQPFLCGEESFGTGSNHIREKDGMWAVLAWLQILASKNPDQSKPLVTVEDIVRAHWSKYGRNYYVRYDYEGVELAQAENMMKYM 96          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: A0A7R9WTY5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WTY5_9STRA)

HSP 1 Score: 140 bits (354), Expect = 9.360e-38
Identity = 63/85 (74.12%), Postives = 69/85 (81.18%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHLR 255
            Y PF+CGEESFGTGSDH+REKDGLWAVLAWLSILA+ N DP+APLV V DVV  HW  YGRN YCR+DFEGV  EGA  MM  +R
Sbjct:  320 YTPFICGEESFGTGSDHIREKDGLWAVLAWLSILASVNTDPSAPLVTVEDVVTKHWKKYGRNYYCRWDFEGVSKEGANKMMDKMR 404          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: A0A482RG37_9ARCH (PGM_PMM_III domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RG37_9ARCH)

HSP 1 Score: 131 bits (330), Expect = 1.130e-37
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPD-PAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHLR 255
            ++PFLCGEESFGTGS+HVREKDGLWAVLAWLSI+A  N   P   LV V  +VR HW  +GRN YCRYD+EGV S GA+AMM HLR
Sbjct:   29 FNPFLCGEESFGTGSNHVREKDGLWAVLAWLSIIAKANESTPVGSLVSVESIVRDHWRRFGRNYYCRYDYEGVESAGADAMMAHLR 114          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: B8C140_THAPS (Phosphoglucomutase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C140_THAPS)

HSP 1 Score: 140 bits (354), Expect = 1.520e-37
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHLR 255
            Y PF+CGEESFGTGSDHVREKDG+WAVLAWL+ILAA+N D + PLV V D+VR HWATYGRN YCR+DFEG+   GA AMM  +R
Sbjct:  365 YTPFICGEESFGTGSDHVREKDGIWAVLAWLNILAAQNNDASKPLVTVEDIVRKHWATYGRNYYCRWDFEGMDGPGANAMMDKMR 449          
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Match: A0A7S3UUC1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUC1_HETAK)

HSP 1 Score: 135 bits (340), Expect = 1.570e-37
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    1 YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGDVVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHL 252
            Y PFLCGEESFGTGSDH+REKDGLWAVLAWL ILA  N DP   LV V D+V+ HW T+GRN YCRYD+EGV +E AEAMM  L
Sbjct:   82 YGPFLCGEESFGTGSDHLREKDGLWAVLAWLQILALYNSDPVRNLVHVEDIVKNHWRTFGRNYYCRYDYEGVNAERAEAMMSSL 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig558.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1U1G9_HETAK7.260e-4281.18Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A6V1U5R2_HETAK1.360e-4181.18Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A7S2Y0U8_9STRA2.180e-4174.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z552_9STRA4.840e-4181.93Phosphoglucomutase, cytoplasmic n=1 Tax=Tribonema ... [more]
A0A7S3I4Z6_9SPIT9.160e-3971.60Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
Q5K271_GUITH1.790e-3870.24Phosphoglucomutase (Fragment) n=1 Tax=Guillardia t... [more]
A0A7R9WTY5_9STRA9.360e-3874.12Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A482RG37_9ARCH1.130e-3769.77PGM_PMM_III domain-containing protein n=1 Tax=arch... [more]
B8C140_THAPS1.520e-3772.94Phosphoglucomutase n=1 Tax=Thalassiosira pseudonan... [more]
A0A7S3UUC1_HETAK1.570e-3772.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig558contigP-wetherbeei_contig558:9131..9635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps268621
PFAMsPGM_PMM_I,PGM_PMM_II,PGM_PMM_III
Model size255
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00408
KEGG koko:K01835
KEGG ReactionR00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.5e-38
EggNOG OGsCOG0033@1|root,KOG0625@2759|Eukaryota,2XBEE@2836|Bacillariophyta
EC5.4.2.2
DescriptionPhosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
Cds size255
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.713737-CDS-P-wetherbeei_contig558:9130..91641683186830.713737-CDS-P-wetherbeei_contig558:9130..9164Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 9131..9164 -
1683186830.7261965-CDS-P-wetherbeei_contig558:9414..96351683186830.7261965-CDS-P-wetherbeei_contig558:9414..9635Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 9415..9635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig558.3.1prot_P-wetherbeei_contig558.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig558 9131..9635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig558.3.1

>prot_P-wetherbeei_contig558.3.1 ID=prot_P-wetherbeei_contig558.3.1|Name=mRNA_P-wetherbeei_contig558.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
YHPFLCGEESFGTGSDHVREKDGLWAVLAWLSILAARNPDPAAPLVGVGD
VVRAHWATYGRNVYCRYDFEGVGSEGAEAMMKHLR
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mRNA from alignment at P-wetherbeei_contig558:9131..9635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig558.3.1 ID=mRNA_P-wetherbeei_contig558.3.1|Name=mRNA_P-wetherbeei_contig558.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=505bp|location=Sequence derived from alignment at P-wetherbeei_contig558:9131..9635- (Phaeothamnion wetherbeei SAG_119_79)
TACCACCCGTTCCTGTGCGGCGAGGAGTCGTTCGGGACAGGCTCCGACCA CGTCCGGGAGAAGGACGGGCTGTGGGCGGTGCTGGCATGGCTATCAATCC TGGCGGCGCGCAACCCGGACCCGGCGGCGCCGCTGGTCGGCGTCGGGGAC GTGGTGCGGGCCCATTGGGCCACGTATGGGAGGAACGTCTACTGCCGCTA CGACTTTGAGGGTGTCGGCAGGTGAGGAAACAAGCATGGAGGAGACTGTG GGGAGCGACGGTGGCAGGATATTGTTGTTGTTTGTCTTTCGCAAGTCCTT CTGTATTGGATGGTTGGCAAAAGTTTGGAACGGAGGCTTGCAGTTTCGTT CTCTTAGTGAAACCATCAGGGCTGGCTTAGCGCTCAACTGTACACTCTTT CTTTCTGTCAATTCACCCGCTGCTTCCTGTCGTATCTGATGGTGCTCCGA CGATGGGCGCGCTGAGAGCAGCGAGGGGGCGGAGGCGATGATGAAGCACC TTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig558:9131..9635-

>mRNA_P-wetherbeei_contig558.3.1 ID=mRNA_P-wetherbeei_contig558.3.1|Name=mRNA_P-wetherbeei_contig558.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig558:9131..9635- (Phaeothamnion wetherbeei SAG_119_79)
TACCACCCGTTCCTGTGCGGCGAGGAGTCGTTCGGGACAGGCTCCGACCA
CGTCCGGGAGAAGGACGGGCTGTGGGCGGTGCTGGCATGGCTATCAATCC
TGGCGGCGCGCAACCCGGACCCGGCGGCGCCGCTGGTCGGCGTCGGGGAC
GTGGTGCGGGCCCATTGGGCCACGTATGGGAGGAACGTCTACTGCCGCTA
CGACTTTGAGGGTGTCGGCAGCGAGGGGGCGGAGGCGATGATGAAGCACC
TTCGC
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