mRNA_P-wetherbeei_contig558.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig558.1.1
Unique NamemRNA_P-wetherbeei_contig558.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: D8LBW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW3_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.010e-25
Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 AGIMLTGR---TIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINPAGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKTEVWRSAPFIVRP 393
            AG+ +T     T DG   VF  +F+GHF LT  LL LI++T  ARV+ LSS+MH  G TDWE A +G  K            + YAD+K+A ++FA+EL++RF     +A A+AV+PG V++++WR+ P +V P
Sbjct:  149 AGVGITDGPRVTADGLDLVFGVNFVGHFCLTNELLPLIQSTPAARVVCLSSVMHHSGGTDWESAVMGHPK---------RRGSTYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNVPKLVMP 273          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: A0A835ZF30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF30_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.890e-24
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 AGIMLTGRTIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINPAGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKTEVWRSAP 378
            AG +  G T  G    F + +LG +++T +L D I  T GARVIN+SS +H +G+T WE AA+G  +G  D   M +    YAD+K+A +LF  ELRRRF   + +A+AI V PG V +++WR+ P
Sbjct:  143 AGQVDPGTTDQGLSSTFMADYLGAYMMTTMLYDTIRNTQGARVINVSSPLHHYGTTKWEDAAMGR-RGEPDF--MNVLFHCYADSKLAMMLFTNELRRRFAADNCSAVAICVSPGNVNSDIWRTVP 265          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: K8YSS2_NANGC (Short-chain dehydrogenase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSS2_NANGC)

HSP 1 Score: 103 bits (256), Expect = 7.780e-24
Identity = 53/125 (42.40%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   16 TGRTIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINPAGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKTEVWRSAPFIVR 390
            +GRT +GF+ +F +++LGHF LTKLL+D+++AT  +R++++SSLMH FG  DW+G+  G+ +   D     I  + Y D+K+A +L   ELR R   +  +  AIAV PG V +++WRS P   R
Sbjct:  110 SGRTKEGFEIMFGTNYLGHFYLTKLLMDVVKATPDSRIVSVSSLMHEFGCLDWQGSLSGNYRALKDR----IFSSRYNDSKLALVLMTLELRHRL--KGTSVRAIAVSPGAVASDIWRSFPLWYR 228          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: A0A524JC42_9CHLR (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524JC42_9CHLR)

HSP 1 Score: 99.4 bits (246), Expect = 1.790e-22
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 AGIMLT--GRTIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINPAGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKTEV 363
            AGIM+   G T+DGF+  F ++ LGHF LT LLLDL+  T  +RV+N+SS+ HRFG+ D++      GKGY+   +       Y  +K+A LLF  EL+ R+     +A+A+A HPGT  T +
Sbjct:  102 AGIMMVPYGTTVDGFERQFGTNHLGHFALTGLLLDLLLGTPRSRVVNVSSVGHRFGTMDFDNLMYAEGKGYMPARA-------YGRSKLANLLFTYELQHRYEVTGADALAVAAHPGTSHTNL 217          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: A4AEV0_9ACTN (Short chain dehydrogenase n=1 Tax=marine actinobacterium PHSC20C1 TaxID=312284 RepID=A4AEV0_9ACTN)

HSP 1 Score: 94.7 bits (234), Expect = 1.050e-20
Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 AGIMLTGR--TIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINP-AGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKT 357
            AGIM+T    TIDGF+    ++ LGHF LT  LLDLIE+T GARV++LSS+ HR+G  ++         G L   +    P A Y  +K+A LLFA EL+RRF    V+A+++A HPGT  T
Sbjct:  106 AGIMMTDAQLTIDGFESQLGTNHLGHFALTGRLLDLIESTPGARVVSLSSVAHRWGFMEF---------GNLMFQNGSYTPRAAYGRSKLANLLFAYELQRRFDAAGVDALSVAAHPGTAGT 218          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: A0A835YTY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.490e-20
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 AGIMLTGRTIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTD-WEGAALGSGKGYLDLASMGINPAGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKTEVWRSAP 378
            AG+   G T +G+   F ++ +GH+LLT LL      TD AR++N++S+ H++G  D WE AA G  +G  D     +    YAD+K+A L+ A +LRRRF     NA+A AVHPG  +T++WR  P
Sbjct:  144 AGVSEPGVTSEGYSITFTTNHIGHYLLTDLL---YPETDNARIVNVASVFHQYGDPDKWEEAATGR-RG--DTGPFDVLTHVYADSKLANLMHALDLRRRFTADRCNAVAFAVHPGNCRTDLWRYVP 264          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: UPI001D13C78C (oxidoreductase n=1 Tax=Nocardia sp. DSM 111727 TaxID=2887191 RepID=UPI001D13C78C)

HSP 1 Score: 92.0 bits (227), Expect = 8.060e-20
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   13 LTGRTIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINPAGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKTEVWR-SAPFIVRPFL 399
            L+GRT DGF+  F  + LGHF  T LLLD + +T+GAR++ +SS+ HRFG  D++  + G G               YA +K+A LLF  EL RR  +  + A+A+A HPG   TEV+R S+P+   P L
Sbjct:  106 LSGRTADGFEIQFGVNHLGHFAFTGLLLDRLASTEGARIVTVSSIGHRFGGIDFDEVSSGGGV--------------YARSKLANLLFTYELDRRLAD--LPAVALAAHPGGASTEVFRYSSPWFRLPNL 219          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: UPI001CFD7C93 (oxidoreductase n=1 Tax=Streptomyces bambusae TaxID=1550616 RepID=UPI001CFD7C93)

HSP 1 Score: 92.0 bits (227), Expect = 9.310e-20
Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    1 AGIMLTG--RTIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINP-AGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKTEVWRSAPFIVR 390
            AG+M T   RT+DG +  F ++ LGHF LT LLLD + AT GARV+ +SS +HRF   D+ G         LD A  G N    Y+ +K+A L+F+ EL RR  +     +++A HPG   T + R  P +VR
Sbjct:  103 AGVMWTPYTRTVDGHELQFATNHLGHFALTGLLLDTLRATPGARVVTISSYLHRFARIDFGG---------LD-AEHGYNRYRAYSQSKLANLMFSRELHRRLEQAGDGTLSVAAHPGLAATGLGRELPALVR 225          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: A0A1F3BSB1_9DELT (Short-chain dehydrogenase n=1 Tax=Anaeromyxobacter sp. RBG_16_69_14 TaxID=1797238 RepID=A0A1F3BSB1_9DELT)

HSP 1 Score: 91.7 bits (226), Expect = 9.380e-20
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   25 TIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINPAGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKTEVWRSAPFIVRPFL 399
            T+DG ++ F  + LG+FLLT LLLDL+E +  +RV+N++S+ HR G  D+E      G GY  + +       YA +K+A +LF  EL RR   + V    +  HPGTV T +W  AP+  RP L
Sbjct:  103 TVDGLEQTFAVNHLGYFLLTNLLLDLLERSAPSRVVNVASVAHRRGDIDFENLEYERG-GYAIMKA-------YARSKLANVLFTAELARRLAGKSVTVTCL--HPGTVATNIWSRAPWFARPLL 217          
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Match: UPI001E48BD9E (oxidoreductase n=11 Tax=Salinibacterium TaxID=235888 RepID=UPI001E48BD9E)

HSP 1 Score: 91.7 bits (226), Expect = 1.590e-19
Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 AGIMLTGR--TIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRFGSTDWEGAALGSGKGYLDLASMGINP-AGYADAKMAQLLFAEELRRRFHERHVNAMAIAVHPGTVKT 357
            AGIM+T    TIDGF+    ++ LGHF LT  L+DLIE+T  ARV++LSSL HR+G  ++         G L   +    P A Y  +K+A LLFA EL+RRF    V+A+++A HPGT  T
Sbjct:  110 AGIMMTDAQLTIDGFESQLGTNHLGHFALTGHLMDLIESTPAARVVSLSSLAHRWGFMEF---------GNLMFHNGSYTPRAAYGRSKLANLLFAYELQRRFDAAGVDAISVAAHPGTAGT 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig558.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBW3_ECTSI2.010e-2543.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZF30_9STRA5.890e-2443.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YSS2_NANGC7.780e-2442.40Short-chain dehydrogenase n=3 Tax=Monodopsidaceae ... [more]
A0A524JC42_9CHLR1.790e-2243.09SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A4AEV0_9ACTN1.050e-2046.72Short chain dehydrogenase n=1 Tax=marine actinobac... [more]
A0A835YTY6_9STRA1.490e-2041.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001D13C78C8.060e-2042.31oxidoreductase n=1 Tax=Nocardia sp. DSM 111727 Tax... [more]
UPI001CFD7C939.310e-2041.35oxidoreductase n=1 Tax=Streptomyces bambusae TaxID... [more]
A0A1F3BSB1_9DELT9.380e-2040.80Short-chain dehydrogenase n=1 Tax=Anaeromyxobacter... [more]
UPI001E48BD9E1.590e-1945.90oxidoreductase n=11 Tax=Salinibacterium TaxID=2358... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig558contigP-wetherbeei_contig558:478..1392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBW3
PFAMsadh_short
Model size402
Max annot lvl2759|Eukaryota
KEGG rclassRC00649
KEGG koko:K11153
KEGG ReactionR08379,R08383
KEGG Pathwayko00830,ko01100,map00830,map01100
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.01e-26
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
EC1.1.1.300
Descriptionoxidation-reduction process
Cds size393
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.5473347-CDS-P-wetherbeei_contig558:477..5971683186830.5473347-CDS-P-wetherbeei_contig558:477..597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 478..597 -
1683186830.5603595-CDS-P-wetherbeei_contig558:866..9581683186830.5603595-CDS-P-wetherbeei_contig558:866..958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 867..958 -
1683186830.570118-CDS-P-wetherbeei_contig558:1202..13831683186830.570118-CDS-P-wetherbeei_contig558:1202..1383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig558 1203..1383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.5795417-UTR-P-wetherbeei_contig558:1383..13921683186830.5795417-UTR-P-wetherbeei_contig558:1383..1392Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig558 1384..1392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig558.1.1prot_P-wetherbeei_contig558.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig558 478..1383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig558.1.1

>prot_P-wetherbeei_contig558.1.1 ID=prot_P-wetherbeei_contig558.1.1|Name=mRNA_P-wetherbeei_contig558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MLTGRTIDGFQEVFQSSFLGHFLLTKLLLDLIEATDGARVINLSSLMHRF
GSTDWEGAALGSGKGYLDLASMGINPAGYADAKMAQLLFAEELRRRFHER
HVNAMAIAVHPGTVKTEVWRSAPFIVRPFL*
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mRNA from alignment at P-wetherbeei_contig558:478..1392-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig558.1.1 ID=mRNA_P-wetherbeei_contig558.1.1|Name=mRNA_P-wetherbeei_contig558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig558:478..1392- (Phaeothamnion wetherbeei SAG_119_79)
GCCGGCATCATGCTGACAGGACGCACTATCGACGGTTTCCAGGAGGTGTT CCAGTCATCGTTCCTCGGTCACTTCCTGCTGACCAAGCTGCTCCTGGACC TGATCGAGGCCACCGACGGCGCCCGCGTCATCAACCTCTCGTCGCTCATG CATCGTTTCGGCTCCACCGACTGGGAGGGCGCCGCGCTCGGTGCGTTCCT GGTGCTCCTGCTGTCCTTTAGGGCCCTTCCCGTTTTTCTGGGTTTCTTGT TTTCTCCTTCTGCAGAGCCATTTTGCGTTCGTTCTTCAATTTGTACGATT CTCGCTCTCTCATCGCTGGCATGCGAACTCTTATCGTCTCGGCATGCCGT GTATGGTTCTGGTTCTTACGTCTAGTACGTTTCCGCCTCTCGACTCCCTC CTGTGTTTGCCGTATCTATGTGCATTTAATGCAGGCTCGGGCAAGGGATA TCTGGATTTGGCAAGCATGGGGATCAACCCCGCGGGGTACGCGGACGCCA AGATGGCCCAGCTGCTCTTCGCCGAGGTAGGGAATGTTGCATATTATTGC TAGTCTTGGTGGCGGTGGTAGTGTTGGGGGATGGAAACGGCGGAGGCACA AGTTTCTGCATCAGACTGTTGTCATTCGTAGCGGCAGATGTCCGCGGAGG TCTCAGAAGGAAGCAGAGCGCGGACACCATGTTTGCCGTAAAACCCTTTA GAATCCCGGCAATCCTTCTTTTTTGTCTGTCTGAAACGGCCGTTTTTCTG ACCTCTTTCATCCTTCCCTTTAATCCTACGTAAGGAAATTCGCAGGAGCT GCGCCGCCGCTTCCACGAGCGCCACGTGAACGCCATGGCCATCGCGGTGC ACCCGGGCACCGTCAAGACGGAGGTCTGGCGCTCCGCCCCCTTCATCGTC CGTCCCTTCCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig558:478..1392-

>mRNA_P-wetherbeei_contig558.1.1 ID=mRNA_P-wetherbeei_contig558.1.1|Name=mRNA_P-wetherbeei_contig558.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig558:478..1392- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACAGGACGCACTATCGACGGTTTCCAGGAGGTGTTCCAGTCATC
GTTCCTCGGTCACTTCCTGCTGACCAAGCTGCTCCTGGACCTGATCGAGG
CCACCGACGGCGCCCGCGTCATCAACCTCTCGTCGCTCATGCATCGTTTC
GGCTCCACCGACTGGGAGGGCGCCGCGCTCGGCTCGGGCAAGGGATATCT
GGATTTGGCAAGCATGGGGATCAACCCCGCGGGGTACGCGGACGCCAAGA
TGGCCCAGCTGCTCTTCGCCGAGGAGCTGCGCCGCCGCTTCCACGAGCGC
CACGTGAACGCCATGGCCATCGCGGTGCACCCGGGCACCGTCAAGACGGA
GGTCTGGCGCTCCGCCCCCTTCATCGTCCGTCCCTTCCTGTGA
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