mRNA_P-wetherbeei_contig55798.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55798.1.1
Unique NamemRNA_P-wetherbeei_contig55798.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A127F0P1_9HYPH (2-nitropropane dioxygenase NPD n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F0P1_9HYPH)

HSP 1 Score: 140 bits (353), Expect = 1.780e-38
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    7 GGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEEA 273
            G  EDFV+TRAYTGKTARD+ N VI+AW+ S L+ LPMPLQGVLMDD IAAA+AAGR ELINNP GQI GML R+RPARDILMSMV EA
Sbjct:  270 GSTEDFVITRAYTGKTARDYRNDVIKAWDESGLRSLPMPLQGVLMDDLIAAAEAAGRHELINNPAGQIAGMLTRKRPARDILMSMVTEA 358          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A1F4DSQ6_9PROT (NMO domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DSQ6_9PROT)

HSP 1 Score: 109 bits (273), Expect = 1.140e-26
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 MRGGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVE 267
            ++GG+EDFV++R YTGKT R F N +I+AW  S L+PLPMP Q ++MDDF  AA  AGR +L +NP GQI G++K R+PAR I+  +VE
Sbjct:  277 LQGGSEDFVISRVYTGKTMRSFKNEIIKAWTDSGLQPLPMPYQKIMMDDFNEAAARAGRWDLRSNPGGQIAGLVKERKPARQIMEELVE 365          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A2A4Q799_9CHLR (2-nitropropane dioxygenase n=10 Tax=cellular organisms TaxID=131567 RepID=A0A2A4Q799_9CHLR)

HSP 1 Score: 109 bits (272), Expect = 1.530e-26
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 MRGGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEEA 273
            + G +EDFV++R+YTGKTAR   N ++QAWE + L PLPMPLQG+LM D  A+A+ AGR +L+  P GQ  G+L   RPA DI+ S+V+EA
Sbjct:  274 LDGRSEDFVISRSYTGKTARQHRNPIVQAWENAGLDPLPMPLQGMLMSDLSASAEKAGRHDLMFTPAGQASGLLNESRPAADIMASLVDEA 364          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A2D6FAB6_9CHLR (2-nitropropane dioxygenase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2D6FAB6_9CHLR)

HSP 1 Score: 107 bits (268), Expect = 5.430e-26
Identity = 51/91 (56.04%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 MRGGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEEA 273
            +RG +EDF  +R+ TGK  R + N V+ AWE SDL PLPMPLQG LM+D + AA  AGR +LINNP GQI GMLK  +PA  I+  +V  A
Sbjct:  269 LRGASEDFPTSRSSTGKPVRQYKNVVMDAWENSDLDPLPMPLQGALMEDLVDAAHNAGRNDLINNPAGQISGMLKESKPAARIMEELVRGA 359          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A2H5YAQ2_9BACT (Monooxygenase n=1 Tax=bacterium HR23 TaxID=2035418 RepID=A0A2H5YAQ2_9BACT)

HSP 1 Score: 104 bits (259), Expect = 1.150e-24
Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 MRGGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEEA 273
            ++  +E+FV++RAY+GKTAR   N + +AWE S L+PLPMPLQG+LM D + +A+ AGR EL+ N  GQIGGMLK R+ A+ I+  +V+ A
Sbjct:  272 LQASSEEFVISRAYSGKTARTLRNPITEAWERSGLEPLPMPLQGLLMADLLESAERAGRYELLFNAAGQIGGMLKERKSAQQIMDDLVQGA 362          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A5N9GAD2_9CHLR (Nitronate monooxygenase n=4 Tax=Chloroflexi TaxID=200795 RepID=A0A5N9GAD2_9CHLR)

HSP 1 Score: 103 bits (257), Expect = 2.270e-24
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   13 AEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEEA 273
            +++FV++R+YTGKTAR + N +++AWE S L+PLPMPLQG+LM DF AAA+ AGR +L+  P GQ  G+L   +PA  I+  +V EA
Sbjct:  277 SDEFVISRSYTGKTARQYKNPIVEAWENSGLEPLPMPLQGMLMADFSAAAERAGRHDLVFTPSGQAAGLLSESKPAAQIMKELVVEA 363          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A351SGN0_9GAMM (NMO domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A351SGN0_9GAMM)

HSP 1 Score: 102 bits (255), Expect = 4.100e-24
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    1 MRGGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVE 267
            + G ++DF V+R +TGKT R F+N V +AW  S+L PLP P Q +LM+DF AAA  AGR +LI NP GQI G+LK+R+PA +I+  ++E
Sbjct:  269 LAGNSQDFEVSRIWTGKTVRVFNNEVSKAWTESNLDPLPTPYQRILMEDFTAAAQKAGRHDLILNPAGQISGILKKRKPAAEIMQELIE 357          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A6L7LE63_9CHLR (Nitronate monooxygenase n=3 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7LE63_9CHLR)

HSP 1 Score: 100 bits (250), Expect = 2.250e-23
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 MRGGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEE 270
            + G +EDF+++R+YTGKTAR +   ++QAWE S L  LPMPLQG+LM  F A+A+ + R +L+ NP GQ  GM+   RPA DI+  +V E
Sbjct:  272 INGRSEDFIISRSYTGKTARQYQGPIVQAWENSGLDTLPMPLQGILMSGFNASAERSKRYDLVFNPAGQGAGMVSEARPAADIMADLVTE 361          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A1F4H4C3_9PROT (NMO domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4H4C3_9PROT)

HSP 1 Score: 100 bits (248), Expect = 4.170e-23
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    7 GGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEEA 273
            G AE F V+RAYTGKTAR F N +  AW+ S L PLPMPLQ VLM   I AA AAGR +L+ N  GQ+ G L  RRPAR+I+  +V +A
Sbjct:  267 GSAEAFTVSRAYTGKTARGFQNEIKDAWDKSGLAPLPMPLQSVLMKPLIDAALAAGRWDLVVNHAGQVAGSLTERRPAREIVERVVSQA 355          
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Match: A0A8I1ULX6_9BURK (Nitronate monooxygenase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A8I1ULX6_9BURK)

HSP 1 Score: 97.8 bits (242), Expect = 2.870e-22
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    7 GGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDFIAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEEA 273
            G +EDFV +R +TGK +R + N +  AW ++ L PLPMP Q VLM+DF+ AA AAGR ++++NP GQI GML++ RPA  I+  M  +A
Sbjct:  268 GSSEDFVASRVFTGKPSRTYHNRIHDAWASAKLDPLPMPHQKVLMEDFLDAARAAGRLDVVSNPSGQIAGMLEKTRPAAQIVEEMAAQA 356          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127F0P1_9HYPH1.780e-3877.532-nitropropane dioxygenase NPD n=1 Tax=Rhodoplanes... [more]
A0A1F4DSQ6_9PROT1.140e-2656.18NMO domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A2A4Q799_9CHLR1.530e-2654.952-nitropropane dioxygenase n=10 Tax=cellular organ... [more]
A0A2D6FAB6_9CHLR5.430e-2656.042-nitropropane dioxygenase n=1 Tax=Chloroflexi bac... [more]
A0A2H5YAQ2_9BACT1.150e-2452.75Monooxygenase n=1 Tax=bacterium HR23 TaxID=2035418... [more]
A0A5N9GAD2_9CHLR2.270e-2452.87Nitronate monooxygenase n=4 Tax=Chloroflexi TaxID=... [more]
A0A351SGN0_9GAMM4.100e-2452.81NMO domain-containing protein n=1 Tax=Gammaproteob... [more]
A0A6L7LE63_9CHLR2.250e-2350.00Nitronate monooxygenase n=3 Tax=Dehalococcoidia ba... [more]
A0A1F4H4C3_9PROT4.170e-2357.30NMO domain-containing protein n=2 Tax=unclassified... [more]
A0A8I1ULX6_9BURK2.870e-2250.56Nitronate monooxygenase n=1 Tax=Burkholderiales ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55798contigP-wetherbeei_contig55798:3..275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123504.JQKD01000004_gene5148
PFAMsNMO
Model size273
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.42e-18
EggNOG OGsCOG2070@1|root,COG2070@2|Bacteria,1MU2F@1224|Proteobacteria,2VQG6@28216|Betaproteobacteria,4AE7Y@80864|Comamonadaceae
DescriptionPFAM 2-nitropropane dioxygenase NPD
Cds size273
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.5154462-CDS-P-wetherbeei_contig55798:2..2751683186830.5154462-CDS-P-wetherbeei_contig55798:2..275Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55798 3..275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55798.1.1prot_P-wetherbeei_contig55798.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55798 3..275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55798.1.1

>prot_P-wetherbeei_contig55798.1.1 ID=prot_P-wetherbeei_contig55798.1.1|Name=mRNA_P-wetherbeei_contig55798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MRGGAEDFVVTRAYTGKTARDFDNAVIQAWETSDLKPLPMPLQGVLMDDF
IAAADAAGRAELINNPVGQIGGMLKRRRPARDILMSMVEEA
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mRNA from alignment at P-wetherbeei_contig55798:3..275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55798.1.1 ID=mRNA_P-wetherbeei_contig55798.1.1|Name=mRNA_P-wetherbeei_contig55798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig55798:3..275+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGCGGCGCGGAAGACTTCGTGGTCACGCGTGCCTACACCGGCAA GACTGCGCGCGATTTCGACAACGCCGTGATCCAGGCATGGGAAACCTCCG ACCTCAAGCCGCTGCCCATGCCGCTGCAGGGGGTGCTGATGGACGATTTC ATCGCCGCTGCCGATGCCGCCGGGCGCGCCGAACTGATCAACAATCCAGT AGGCCAGATCGGAGGCATGTTGAAGCGTCGCAGGCCGGCGCGCGACATCC TGATGTCCATGGTCGAGGAAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55798:3..275+

>mRNA_P-wetherbeei_contig55798.1.1 ID=mRNA_P-wetherbeei_contig55798.1.1|Name=mRNA_P-wetherbeei_contig55798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig55798:3..275+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGCGGCGCGGAAGACTTCGTGGTCACGCGTGCCTACACCGGCAA
GACTGCGCGCGATTTCGACAACGCCGTGATCCAGGCATGGGAAACCTCCG
ACCTCAAGCCGCTGCCCATGCCGCTGCAGGGGGTGCTGATGGACGATTTC
ATCGCCGCTGCCGATGCCGCCGGGCGCGCCGAACTGATCAACAATCCAGT
AGGCCAGATCGGAGGCATGTTGAAGCGTCGCAGGCCGGCGCGCGACATCC
TGATGTCCATGGTCGAGGAAGCC
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