mRNA_P-wetherbeei_contig55792.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55792.1.1
Unique NamemRNA_P-wetherbeei_contig55792.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: A0A6I5NDM4_9CYAN (Photosystem I iron-sulfur center n=2 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=A0A6I5NDM4_9CYAN)

HSP 1 Score: 131 bits (330), Expect = 4.720e-38
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 LKNMSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            L  MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIA++PRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY
Sbjct:   26 LHPMSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAASPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 109
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BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: K9XT12_STAC7 (Photosystem I iron-sulfur center n=41 Tax=root TaxID=1 RepID=K9XT12_STAC7)

HSP 1 Score: 129 bits (324), Expect = 1.690e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXXLSIRVYLG ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXLSIRVYLGPETTRSMGLAY 81
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BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: A0A088CIH6_9CHLO (Photosystem I iron-sulfur center n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A088CIH6_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 7.970e-37
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            MSH+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXX S+RVYLG ETTRSMGLAY
Sbjct:    6 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGAETTRSMGLAY 86
[Close]
BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: A0A097KM99_9CHLO (Photosystem I iron-sulfur center n=6 Tax=Chlorophyta TaxID=3041 RepID=A0A097KM99_9CHLO)

HSP 1 Score: 126 bits (317), Expect = 3.780e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            MSHSV IYDTCIGCTQCVRACPTDVLEMVPWDGCKA QIASAPRTEDXXXXXXXXXXXXXXX S+RVYLG ETTRSMGLAY
Sbjct:   23 MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKANQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGSETTRSMGLAY 103
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BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: PSAC_SYNP2 (Photosystem I iron-sulfur center n=424 Tax=root TaxID=1 RepID=PSAC_SYNP2)

HSP 1 Score: 125 bits (315), Expect = 3.990e-36
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            MSHSV IYDTCIGCTQCVRACP DVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
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BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: PSAC_THEVB (Photosystem I iron-sulfur center n=199 Tax=cellular organisms TaxID=131567 RepID=PSAC_THEVB)

HSP 1 Score: 125 bits (315), Expect = 3.990e-36
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            M+H+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAS+PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:    1 MAHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
[Close]
BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: PSAC_GUITH (Photosystem I iron-sulfur center n=17 Tax=Eukaryota TaxID=2759 RepID=PSAC_GUITH)

HSP 1 Score: 125 bits (314), Expect = 5.670e-36
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            MSHSV +YDTCIGCTQCVRACP DVLEMV WDGCKAGQIASAPRTEDXXXXXXXXXXXXXXX S+RVYLGGETTRSMGLAY
Sbjct:    1 MSHSVKVYDTCIGCTQCVRACPCDVLEMVAWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXXSVRVYLGGETTRSMGLAY 81
[Close]
BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: M1KFN6_DIALT (Photosystem I iron-sulfur center n=4 Tax=Eukaryota TaxID=2759 RepID=M1KFN6_DIALT)

HSP 1 Score: 125 bits (313), Expect = 8.050e-36
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            MSH+V +YDTCIGCTQCVRACP DVLEMV WDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLS+RVYLGGETTRS+GLAY
Sbjct:    1 MSHNVKVYDTCIGCTQCVRACPCDVLEMVKWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSVRVYLGGETTRSLGLAY 81
[Close]
BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: M1X443_9NOST (Photosystem I iron-sulfur center n=9 Tax=cellular organisms TaxID=131567 RepID=M1X443_9NOST)

HSP 1 Score: 125 bits (313), Expect = 8.050e-36
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            MSH+V IYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQ+A++PRTEDXXXXXXXXXXXXXXX SIRVYLG ETTRSMGLAY
Sbjct:    1 MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQLAASPRTEDXXXXXXXXXXXXXXXXSIRVYLGAETTRSMGLAY 81
[Close]
BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Match: A0A6B3LYA2_9CYAN (Photosystem I iron-sulfur center n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6B3LYA2_9CYAN)

HSP 1 Score: 124 bits (312), Expect = 1.140e-35
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:   10 MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDXXXXXXXXXXXXXXXLSIRVYLGGETTRSMGLAY 252
            MSH V IYDTCIGCTQCVRACP DVLEMVPWDGCKA QIAS+PRT+DXXXXXXXXXXXXXXXLS+RVYLGGETTRSMGLAY
Sbjct:    1 MSHKVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAAQIASSPRTQDXXXXXXXXXXXXXXXLSVRVYLGGETTRSMGLAY 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55792.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I5NDM4_9CYAN4.720e-3894.05Photosystem I iron-sulfur center n=2 Tax=unclassif... [more]
K9XT12_STAC71.690e-3796.30Photosystem I iron-sulfur center n=41 Tax=root Tax... [more]
A0A088CIH6_9CHLO7.970e-3793.83Photosystem I iron-sulfur center n=2 Tax=Chlorophy... [more]
A0A097KM99_9CHLO3.780e-3693.83Photosystem I iron-sulfur center n=6 Tax=Chlorophy... [more]
PSAC_SYNP23.990e-3693.83Photosystem I iron-sulfur center n=424 Tax=root Ta... [more]
PSAC_THEVB3.990e-3692.59Photosystem I iron-sulfur center n=199 Tax=cellula... [more]
PSAC_GUITH5.670e-3692.59Photosystem I iron-sulfur center n=17 Tax=Eukaryot... [more]
M1KFN6_DIALT8.050e-3691.36Photosystem I iron-sulfur center n=4 Tax=Eukaryota... [more]
M1X443_9NOST8.050e-3691.36Photosystem I iron-sulfur center n=9 Tax=cellular ... [more]
A0A6B3LYA2_9CYAN1.140e-3591.36Photosystem I iron-sulfur center n=2 Tax=Oscillato... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55792contigP-wetherbeei_contig55792:15..269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D1J7C7
Preferred namepsaC
PFAMsFer4,Fer4_4
Model size255
Max annot lvl2759|Eukaryota
KEGG koko:K02691
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009521,GO:0009522,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0015979,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0098796
Exons1
Evalue8.55e-39
EggNOG OGsCOG1145@1|root,2S26M@2759|Eukaryota
Descriptionphotosynthetic electron transport in photosystem I
Cds size246
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.4439037-UTR-P-wetherbeei_contig55792:14..231683186830.4439037-UTR-P-wetherbeei_contig55792:14..23Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55792 15..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.4533868-CDS-P-wetherbeei_contig55792:23..2691683186830.4533868-CDS-P-wetherbeei_contig55792:23..269Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55792 24..269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55792.1.1prot_P-wetherbeei_contig55792.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55792 24..269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55792.1.1

>prot_P-wetherbeei_contig55792.1.1 ID=prot_P-wetherbeei_contig55792.1.1|Name=mRNA_P-wetherbeei_contig55792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MSHSVNIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVG
CKRCETACPTDFLSIRVYLGGETTRSMGLAY*
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mRNA from alignment at P-wetherbeei_contig55792:15..269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55792.1.1 ID=mRNA_P-wetherbeei_contig55792.1.1|Name=mRNA_P-wetherbeei_contig55792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig55792:15..269+ (Phaeothamnion wetherbeei SAG_119_79)
CTAAAAAATATGTCACATTCAGTAAATATTTACGATACTTGTATTGGCTG
TACACAATGTGTACGAGCTTGCCCTACTGATGTACTGGAAATGGTTCCAT
GGGACGGGTGTAAAGCTGGACAAATTGCTTCAGCTCCTCGTACTGAAGAT
TGTGTAGGATGTAAGCGTTGTGAGACTGCTTGCCCTACAGACTTTTTAAG
TATCCGTGTTTATTTAGGTGGTGAAACAACACGTAGTATGGGATTAGCAT
ATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55792:15..269+

>mRNA_P-wetherbeei_contig55792.1.1 ID=mRNA_P-wetherbeei_contig55792.1.1|Name=mRNA_P-wetherbeei_contig55792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig55792:15..269+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCACATTCAGTAAATATTTACGATACTTGTATTGGCTGTACACAATG
TGTACGAGCTTGCCCTACTGATGTACTGGAAATGGTTCCATGGGACGGGT
GTAAAGCTGGACAAATTGCTTCAGCTCCTCGTACTGAAGATTGTGTAGGA
TGTAAGCGTTGTGAGACTGCTTGCCCTACAGACTTTTTAAGTATCCGTGT
TTATTTAGGTGGTGAAACAACACGTAGTATGGGATTAGCATATTAA
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