mRNA_P-wetherbeei_contig55786.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55786.1.1
Unique NamemRNA_P-wetherbeei_contig55786.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: A0A351EP39_9ACTN (PPOX class F420-dependent oxidoreductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EP39_9ACTN)

HSP 1 Score: 159 bits (401), Expect = 5.360e-48
Identity = 75/120 (62.50%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    4 VINDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDYPSEVRSERVILKIA 363
            +I D +KALAQ +NF  ++T++PSGQ QT V+WV CDD+HILINTEV  RKFKNV+ DPRVTV IW+  NPY FAEVRG VVETI G  A   I+ +AQ+Y G DY  ++ SERV+LKIA
Sbjct:    1 MIKDRVKALAQAKNFAALTTMMPSGQPQTQVMWVHCDDEHILINTEVHRRKFKNVELDPRVTVMIWDNENPYVFAEVRGRVVETITGDAAVTSINALAQKYTGKDYAPQIESERVVLKIA 120          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: UPI001C62AF0E (PPOX class F420-dependent oxidoreductase n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62AF0E)

HSP 1 Score: 151 bits (381), Expect = 6.520e-45
Identity = 66/121 (54.55%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 VVINDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDYPSEVRSERVILKIA 363
            + ++ ++KALA  +NF T++TL+P GQ QT V+W+  DDDH+LINTEV   K+KN   DPRVTVT+W+A NPY + E RG VV+ + G  AR HID ++Q+Y GTDYP+ + SER+ILK+A
Sbjct:    1 MALDPDLKALASEKNFATLTTLMPDGQPQTQVMWIGADDDHLLINTEVHRAKYKNAARDPRVTVTVWDASNPYRYIEARGRVVDEVRGDAARTHIDELSQKYSGTDYPAPITSERIILKVA 121          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: A0A7V9AYE6_9ACTN (PPOX class F420-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9AYE6_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 1.390e-43
Identity = 67/120 (55.83%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 VINDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDYPSEVRSERVILKIA 363
            ++ D+++ LA+G NF TI+TLL  G   THV+W+DCDDDH+LINTE    KF+NVQ DPRV+V IW++ + Y +AEVRG VVET+ GS AR HID ++Q+Y G  Y + + +ERVILK+A
Sbjct:    1 MLEDKVRRLARGANFATITTLLADGGPATHVIWIDCDDDHLLINTETGRVKFRNVQRDPRVSVVIWDSDDAYSYAEVRGRVVETVAGSDARRHIDELSQKYHGKPYSNPIETERVILKVA 120          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: A0A7W1ZBY1_9ACTN (Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1ZBY1_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.210e-42
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 1
Query:    4 VINDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDYPSEVRSERVILKI 360
            ++   IK LA  +NFGT+S  LPSGQI +HV+WVD  D+H+LINTE+   K+K + ADP+VTVT+WNA N Y + EVRGTVV  +GG  AR+HID ++QRY G DY + + +ERVILKI
Sbjct:    1 MLEPAIKDLATAKNFGTLSFRLPSGQIASHVMWVDATDEHLLINTEIGRAKYKAISADPQVTVTVWNADNAYEYGEVRGTVVGEVGGQEARDHIDALSQRYFGHDYAAPIGTERVILKI 119          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: A0A7V9EIZ2_9ACTN (PPOX class F420-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9EIZ2_9ACTN)

HSP 1 Score: 144 bits (363), Expect = 3.160e-42
Identity = 64/120 (53.33%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    4 VINDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDYPSEVRSERVILKIA 363
            +I D+I+ LA G NFGTI+TLL  G   THV+WVDCDD+H+L+NTE    KF N++ DPRV++ +WNA +PY + EVRG VVET+ G+ AR HID ++ +Y G  Y + + +ERVIL++A
Sbjct:    1 MIEDKIRQLASGPNFGTIATLLSDGSPATHVMWVDCDDEHMLVNTETGRAKFANIERDPRVSIVVWNADDPYDYVEVRGKVVETMAGAEARAHIDELSHKYHGKAYSNPIETERVILRVA 120          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: A0A5Q4FR22_9ACTN (TIGR03618 family F420-dependent PPOX class oxidoreductase n=1 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A5Q4FR22_9ACTN)

HSP 1 Score: 144 bits (363), Expect = 3.570e-42
Identity = 67/118 (56.78%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    7 INDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDYPSEVRSERVILKI 360
            ++D+I+ LA GRNF   +TL P G  QTHV+WVD D DHILINTEV   KF+N + DPRVTVTIW+  N Y +AEVRG V + + G  AREHID  + RY G  YP+ + SER IL+I
Sbjct:    3 LDDDIRTLATGRNFAAFTTLFPDGHPQTHVMWVDADADHILINTEVHRAKFRNTEQDPRVTVTIWDVDNAYRYAEVRGRVTDVVTGPEAREHIDACSNRYFGKPYPATIESERAILRI 120          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: UPI001BC4D704 (PPOX class F420-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=UPI001BC4D704)

HSP 1 Score: 144 bits (363), Expect = 3.570e-42
Identity = 69/120 (57.50%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    7 INDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDY-PSEVRSERVILKIA 363
            +  E+K  A G+NF  ++TL   G  QT V+WVD DDDHILINTEVE +KFKNV+ DPRVTV +WN  NPY + EVRG VVE + G  AR HID  +QRY G DY P  + S R +LKIA
Sbjct:    3 LKPEVKEFATGKNFAALTTLFDDGHPQTQVMWVDADDDHILINTEVERQKFKNVERDPRVTVLVWNKENPYQYVEVRGRVVEIVHGDEARAHIDACSQRYTGKDYNPDNIGSPRAVLKIA 122          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: A0A6J4IM03_9ACTN (Putative_PNPOx domain-containing protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4IM03_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 1.360e-41
Identity = 66/120 (55.00%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    4 VINDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDY-PSEVRSERVILKI 360
            +I+D +K LAQ  NF  +STL+P G+ QTHV+WVD DD+H++INTE+  +K +NV+ DPRVTVT+ +  NPY +AEVRG VVE + G  AR HID+++Q+Y G DY P+ +++ERVIL+I
Sbjct:    1 MIDDTVKQLAQQPNFAALSTLMPDGRPQTHVMWVDADDEHLIINTELHRQKARNVERDPRVTVTVIDRENPYHYAEVRGHVVEVVRGDEARAHIDQLSQKYFGQDYDPANIQTERVILRI 120          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: A0A7W1AD40_9ACTN (TIGR03618 family F420-dependent PPOX class oxidoreductase n=1 Tax=Rubrobacteraceae bacterium TaxID=2740537 RepID=A0A7W1AD40_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 1.850e-41
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    7 INDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDYPSEVRSERVILKIA 363
            ++  +  LA+G NF  ++TLLP G  QT V+W+D DDDHILINTEV  +KFKNV+ DPRVTVTIW+  +PY F EVRG VV    G  AREHID ++ +Y G+ Y ++++SERVIL+IA
Sbjct:   10 VHPRVLELARGHNFAALTTLLPGGHPQTQVMWIDADDDHILINTEVHRQKFKNVERDPRVTVTIWDREDPYSFVEVRGEVVGKARGQEAREHIDDLSYKYRGSPYGTKIQSERVILRIA 128          
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Match: UPI000E5A8177 (PPOX class F420-dependent oxidoreductase n=1 Tax=Rubrobacter indicoceani TaxID=2051957 RepID=UPI000E5A8177)

HSP 1 Score: 142 bits (358), Expect = 3.250e-41
Identity = 67/113 (59.29%), Postives = 89/113 (78.76%), Query Frame = 1
Query:   13 DEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVELRKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQRYVGTDYP-SEVRSERV 348
            D +K LAQG NFG+I+T+LPSG +QTH++WVD D + +++NTEV   K+KN+Q DPRVT+TI +  NPY +AEVRG V ET+ G  AREHIDR+AQ+Y G DYP  +++SERV
Sbjct:   13 DTVK-LAQGANFGSITTILPSGLLQTHLIWVDSDGERVVVNTEVHRTKYKNIQRDPRVTLTIRDEENPYRYAEVRGRVDETVTGQAAREHIDRLAQKYTGEDYPVDQIKSERV 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55786.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351EP39_9ACTN5.360e-4862.50PPOX class F420-dependent oxidoreductase n=1 Tax=A... [more]
UPI001C62AF0E6.520e-4554.55PPOX class F420-dependent oxidoreductase n=1 Tax=I... [more]
A0A7V9AYE6_9ACTN1.390e-4355.83PPOX class F420-dependent oxidoreductase n=1 Tax=A... [more]
A0A7W1ZBY1_9ACTN1.210e-4257.14Pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A7V9EIZ2_9ACTN3.160e-4253.33PPOX class F420-dependent oxidoreductase n=1 Tax=A... [more]
A0A5Q4FR22_9ACTN3.570e-4256.78TIGR03618 family F420-dependent PPOX class oxidore... [more]
UPI001BC4D7043.570e-4257.50PPOX class F420-dependent oxidoreductase n=1 Tax=A... [more]
A0A6J4IM03_9ACTN1.360e-4155.00Putative_PNPOx domain-containing protein n=1 Tax=u... [more]
A0A7W1AD40_9ACTN1.850e-4156.30TIGR03618 family F420-dependent PPOX class oxidore... [more]
UPI000E5A81773.250e-4159.29PPOX class F420-dependent oxidoreductase n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55786contigP-wetherbeei_contig55786:159..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42256.RradSPS_2720
PFAMsPutative_PNPOx
Model size363
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.66e-40
EggNOG OGsCOG3576@1|root,COG3576@2|Bacteria,2II3S@201174|Actinobacteria
Descriptionpyridoxamine 5-phosphate
Cds size363
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.2910306-CDS-P-wetherbeei_contig55786:158..5211683186830.2910306-CDS-P-wetherbeei_contig55786:158..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55786 159..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55786.1.1prot_P-wetherbeei_contig55786.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55786 159..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55786.1.1

>prot_P-wetherbeei_contig55786.1.1 ID=prot_P-wetherbeei_contig55786.1.1|Name=mRNA_P-wetherbeei_contig55786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
VVINDEIKALAQGRNFGTISTLLPSGQIQTHVVWVDCDDDHILINTEVEL
RKFKNVQADPRVTVTIWNARNPYFFAEVRGTVVETIGGSIAREHIDRVAQ
RYVGTDYPSEVRSERVILKIA
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mRNA from alignment at P-wetherbeei_contig55786:159..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55786.1.1 ID=mRNA_P-wetherbeei_contig55786.1.1|Name=mRNA_P-wetherbeei_contig55786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig55786:159..521+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTGATCAACGACGAGATCAAGGCGCTCGCTCAGGGCAGGAATTTCGG CACGATCTCCACGTTGCTGCCGAGTGGTCAGATCCAGACGCACGTGGTGT GGGTCGACTGCGACGACGATCACATCCTCATCAACACCGAGGTCGAGTTG CGCAAGTTCAAGAACGTCCAAGCCGACCCGCGGGTCACCGTGACGATCTG GAACGCGAGGAACCCGTACTTCTTCGCCGAGGTCCGCGGCACCGTCGTCG AGACCATCGGCGGTTCGATCGCGCGCGAGCACATCGACCGAGTGGCGCAG CGGTACGTCGGGACCGACTACCCGAGCGAGGTTCGGTCCGAACGGGTCAT CCTCAAGATCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55786:159..521+

>mRNA_P-wetherbeei_contig55786.1.1 ID=mRNA_P-wetherbeei_contig55786.1.1|Name=mRNA_P-wetherbeei_contig55786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig55786:159..521+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTGATCAACGACGAGATCAAGGCGCTCGCTCAGGGCAGGAATTTCGG
CACGATCTCCACGTTGCTGCCGAGTGGTCAGATCCAGACGCACGTGGTGT
GGGTCGACTGCGACGACGATCACATCCTCATCAACACCGAGGTCGAGTTG
CGCAAGTTCAAGAACGTCCAAGCCGACCCGCGGGTCACCGTGACGATCTG
GAACGCGAGGAACCCGTACTTCTTCGCCGAGGTCCGCGGCACCGTCGTCG
AGACCATCGGCGGTTCGATCGCGCGCGAGCACATCGACCGAGTGGCGCAG
CGGTACGTCGGGACCGACTACCCGAGCGAGGTTCGGTCCGAACGGGTCAT
CCTCAAGATCGCG
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